Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Forward (+)

4988008 .. 4994109

Gene Structure 6102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G14840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTCGTTAAATCGACAACTTCTATTCACTTACTACTTCATCGTCTCTCTTATCCTCTTCTCCGATTTCGTATCCTCTGCAACATTACCAAAAGAAGAAGTGGATGCTTTACAAAGCGTCGCGACGGCGTTGAAGAAGAGTAATTGGAATTTCAGTGTGGATCCATGTGACGAAACCTTGTCTGAAGGCGGATGGAGGAATCCTAACGCCGCTAAGGGATTCGAAGACGCCGTTACTTGTAACTGCTCCTCCGTCATCTGCCACGTCACCAACATGTGCGTTCTTCTCTCTTTTTCAACATCCTATCTTTTCTTTGTCAAAATTATCATTAATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

112

Amino Acids

12.49

Weight (kDa)

4.87

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	122
AciI	CCGC	2 cut(s)	189, 210
AclWI	GGATC	2 cut(s)	155, 168
AcsI	RAATTY	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	228
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	133, 297
AjiI	CACGTC	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	2 cut(s)	155, 168
ApoI	RAATTY	1 cut(s)	148
AseI	ATTAAT	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	259
AsuII	TTCGAA	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	231
BccI	CCATC	1 cut(s)	186
BceAI	ACGGC	2 cut(s)	141, 215
BciVI	GTATCC	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	337
BfuI	GTATCC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
BmgBI	CACGTC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	162
BmsI	GCATC	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
BseGI	GGATG	3 cut(s)	109, 197, 299
BseRI	GAGGAG	1 cut(s)	238
Bsh1236I	CGCG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	49
BsmBI	CGTCTC	1 cut(s)	49
Bsp119I	TTCGAA	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	160
Bsp68I	TCGCGA	1 cut(s)	122
BspACI	CCGC	2 cut(s)	189, 210
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	2 cut(s)	155, 168
BspT104I	TTCGAA	1 cut(s)	222
BssMI	GATC	1 cut(s)	160
BssNI	GRCGYC	1 cut(s)	228
Bst6I	CTCTTC	2 cut(s)	62, 131
BstACI	GRCGYC	1 cut(s)	228
BstBI	TTCGAA	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	3 cut(s)	109, 197, 299
BstFNI	CGCG	1 cut(s)	122
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	160
BstNSI	RCATGY	1 cut(s)	277
BstUI	CGCG	1 cut(s)	122
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuI	GTATCC	1 cut(s)	82
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	109, 197, 299
BtsIMutI	CAGTG	1 cut(s)	160
BtuMI	TCGCGA	1 cut(s)	122
CseI	GACGC	2 cut(s)	106, 236
CviAII	CATG	2 cut(s)	165, 274
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eam1104I	CTCTTC	2 cut(s)	62, 131
EarI	CTCTTC	2 cut(s)	62, 131
EciI	GGCGGA	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	2 cut(s)	168, 277
FaiI	YATR	2 cut(s)	166, 275
FatI	CATG	2 cut(s)	164, 273
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	3 cut(s)	116, 204, 286
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	337
GluI	GCNGC	1 cut(s)	210
HgaI	GACGC	2 cut(s)	106, 236
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	168, 277
HinfI	GANTC	2 cut(s)	199, 219
HphI	GGTGA	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	64, 184
Hpy188III	TCNNGA	1 cut(s)	121
Hpy99I	CGWCG	2 cut(s)	122, 127
HpyAV	CCTTC	1 cut(s)	179
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	168, 277
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	251
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	337
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	4 cut(s)	167, 232, 239, 265
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	6 cut(s)	49, 107, 145, 148, 236, 275
MflI	RGATCY	1 cut(s)	160
MluCI	AATT	3 cut(s)	142, 148, 321
MnlI	CCTC	4 cut(s)	65, 85, 189, 259
MseI	TTAA	2 cut(s)	8, 330
MslI	CAYNNNNRTG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	122
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	2 cut(s)	168, 277
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	2 cut(s)	167, 265
NruI	TCGCGA	1 cut(s)	122
NspI	RCATGY	1 cut(s)	277
NspV	TTCGAA	1 cut(s)	222
PciI	ACATGT	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	199, 219
PkrI	GCNGC	1 cut(s)	211
PscI	ACATGT	1 cut(s)	273
PshBI	ATTAAT	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	160
RruI	TCGCGA	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	8, 330
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	160
SetI	ASST	2 cut(s)	179, 267
SfaNI	GCATC	1 cut(s)	94
SfuI	TTCGAA	1 cut(s)	222
SgeI	CNNG	6 cut(s)	133, 177, 190, 249, 275, 286
SmiMI	CAYNNNNRTG	1 cut(s)	272
Sse9I	AATT	3 cut(s)	142, 148, 321
SsiI	CCGC	2 cut(s)	189, 210
SspMI	CTAG	1 cut(s)	337
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	2 cut(s)	13, 222
TasI	AATT	3 cut(s)	142, 148, 321
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	2 cut(s)	199, 219
Tru1I	TTAA	2 cut(s)	8, 330
Tru9I	TTAA	2 cut(s)	8, 330
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	2 cut(s)	167, 265
Tsp45I	GTSAC	2 cut(s)	167, 265
TspDTI	ATGAA	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	1 cut(s)	160
VspI	ATTAAT	1 cut(s)	330
XapI	RAATTY	1 cut(s)	148
XceI	RCATGY	1 cut(s)	277
XspI	CTAG	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.