Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

24605630 .. 24614325

Gene Structure 8696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG208700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGACCACCGAGGTAGTTTTGAAATCTCAGAATTTGCCGGGAAAACTCCCGCCAGAGTTGATTAGGCTCCCCTATCTCCAAGAAATTCGGATTAGTGACAATTCCTTTTCTGGAAAGATACCTAATTTTATTCAGAATTGGACAAATCTTGAAAAACTTGCGATTCAGGCCAGTGGCTTGACCGGGCCCATTCCTTACGGCATTTCTCTTTTGACAAAATTAACTGACATGAGAATTACTGACTTGAATGGACCTGAATCACCATTTCCTCCACTTGAGAATATGAAAAAACCAAAGATACTGTTCTTGACTGGAAATATGCTCACTGGATCTGTGCCAGATTGGATGAATAGCGGAGGCAACATTGATCTTTCATACAACGACTTCACCACTAAGTCAGAGGCTGTCTGTTCTCAAGGCGGCTTAGCAAGCTTAACTTATGAGTATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

150

Amino Acids

16.55

Weight (kDa)

5.09

Isoelectric Point (pI)

30.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	50, 354, 420
AclWI	GGATC	1 cut(s)	337
AcsI	RAATTY	2 cut(s)	31, 84
AgsI	TTSAA	3 cut(s)	22, 152, 247
AluBI	AGCT	1 cut(s)	432
AluI	AGCT	1 cut(s)	432
AlwI	GGATC	1 cut(s)	337
AlwNI	CAGNNNCTG	1 cut(s)	404
AoxI	GGCC	2 cut(s)	168, 185
ApaI	GGGCCC	1 cut(s)	189
ApoI	RAATTY	2 cut(s)	31, 84
AspS9I	GGNCC	3 cut(s)	185, 186, 251
AsuC2I	CCSGG	2 cut(s)	39, 184
AsuHPI	GGTGA	2 cut(s)	252, 379
AvaII	GGWCC	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	189
BceAI	ACGGC	1 cut(s)	214
BcnI	CCSGG	2 cut(s)	39, 184
BisI	GCNGC	1 cut(s)	421
BlpI	GCTNAGC	1 cut(s)	424
BlsI	GCNGC	1 cut(s)	422
Bme1390I	CCNGG	2 cut(s)	39, 184
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	3 cut(s)	185, 186, 251
BmiI	GGNNCC	2 cut(s)	68, 187
BmrFI	CCNGG	2 cut(s)	39, 184
Bpu1102I	GCTNAGC	1 cut(s)	424
BpuEI	CTTGAG	2 cut(s)	296, 399
BpuMI	CCSGG	2 cut(s)	39, 184
BsaJI	CCNNGG	1 cut(s)	9
Bse1I	ACTGG	3 cut(s)	171, 316, 331
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	1 cut(s)	351
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	3 cut(s)	171, 316, 331
BseSI	GKGCMC	1 cut(s)	189
BshFI	GGCC	2 cut(s)	170, 187
BsiSI	CCGG	2 cut(s)	38, 183
BsnI	GGCC	2 cut(s)	170, 187
Bsp120I	GGGCCC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	329, 367
Bsp1720I	GCTNAGC	1 cut(s)	424
BspACI	CCGC	3 cut(s)	50, 354, 420
BspANI	GGCC	2 cut(s)	170, 187
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	2 cut(s)	68, 187
BspPI	GGATC	1 cut(s)	337
BsrI	ACTGG	3 cut(s)	171, 316, 331
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	2 cut(s)	329, 367
Bst4CI	ACNGT	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	3 cut(s)	27, 393, 424
BstF5I	GGATG	1 cut(s)	351
BstKTI	GATC	2 cut(s)	332, 370
BstMBI	GATC	2 cut(s)	329, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 429
BstSCI	CCNGG	2 cut(s)	37, 182
BstSLI	GKGCMC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	2 cut(s)	170, 187
BtsCI	GGATG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	178, 324
Cac8I	GCNNGC	1 cut(s)	430
CaiI	CAGNNNCTG	1 cut(s)	404
Cfr13I	GGNCC	3 cut(s)	185, 186, 251
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	7 cut(s)	67, 170, 177, 187, 404, 423, 432
CviKI_1	RGCY	7 cut(s)	67, 170, 177, 187, 404, 423, 432
DdeI	CTNAG	3 cut(s)	27, 393, 424
DpnI	GATC	2 cut(s)	331, 369
DpnII	GATC	2 cut(s)	329, 367
Eco24I	GRGCYC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	251
EcoT38I	GRGCYC	1 cut(s)	189
FaeI	CATG	1 cut(s)	232
FaiI	YATR	7 cut(s)	230, 284, 320, 376, 441, 447, 449
FalI	AAGNNNNNCTT	2 cut(s)	421, 453
FatI	CATG	1 cut(s)	228
FauI	CCCGC	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	421
FokI	GGATG	1 cut(s)	358
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	421
GluI	GCNGC	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	170, 187
HapII	CCGG	2 cut(s)	38, 183
Hin1II	CATG	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	430
HinfI	GANTC	2 cut(s)	163, 257
HpaII	CCGG	2 cut(s)	38, 183
HphI	GGTGA	2 cut(s)	252, 379
Hpy188I	TCNGA	4 cut(s)	30, 90, 135, 400
Hpy188III	TCNNGA	3 cut(s)	111, 149, 307
HpyCH4III	ACNGT	1 cut(s)	303
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 429
HpyF3I	CTNAG	3 cut(s)	27, 393, 424
Hsp92II	CATG	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	329, 367
LmnI	GCTCC	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	2 cut(s)	331, 369
MboI	GATC	2 cut(s)	329, 367
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	7 cut(s)	31, 84, 100, 124, 136, 218, 234
MnlI	CCTC	4 cut(s)	4, 279, 350, 394
MseI	TTAA	2 cut(s)	221, 434
MspI	CCGG	2 cut(s)	38, 183
MspR9I	CCNGG	2 cut(s)	39, 184
MwoI	GCNNNNNNNGC	2 cut(s)	167, 429
NciI	CCSGG	2 cut(s)	39, 184
NdeII	GATC	2 cut(s)	329, 367
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	2 cut(s)	68, 187
NmuCI	GTSAC	1 cut(s)	95
PfeI	GAWTC	2 cut(s)	163, 257
PkrI	GCNGC	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	68, 187
PspOMI	GGGCCC	1 cut(s)	185
PspPI	GGNCC	3 cut(s)	185, 186, 251
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	221, 434
SatI	GCNGC	1 cut(s)	421
Sau3AI	GATC	2 cut(s)	329, 367
Sau96I	GGNCC	3 cut(s)	185, 186, 251
ScrFI	CCNGG	2 cut(s)	39, 184
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	4 cut(s)	15, 124, 256, 434
SinI	GGWCC	1 cut(s)	251
SmlI	CTYRAG	2 cut(s)	275, 414
SmoI	CTYRAG	2 cut(s)	275, 414
Sse9I	AATT	7 cut(s)	31, 84, 100, 124, 136, 218, 234
SsiI	CCGC	3 cut(s)	50, 354, 420
StyD4I	CCNGG	2 cut(s)	37, 182
TaaI	ACNGT	1 cut(s)	303
TasI	AATT	7 cut(s)	31, 84, 100, 124, 136, 218, 234
TauI	GCSGC	1 cut(s)	423
TfiI	GAWTC	2 cut(s)	163, 257
Tru1I	TTAA	2 cut(s)	221, 434
Tru9I	TTAA	2 cut(s)	221, 434
TscAI	CASTG	2 cut(s)	178, 331
TseFI	GTSAC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	3 cut(s)	299, 362, 363
TspRI	CASTG	2 cut(s)	178, 331
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	2 cut(s)	31, 84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.