MD11G1268400.v1.1

leucine-rich repeat receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
38441312 .. 38448925
7614 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1268400.v1.1.491

Sequence Viewer

Length: 1158 bp
ATGATGATTATGTTCTTCCCTCGACTTCTTCCTCATTCTCTTTTCTTTGTAGCTTGCTTTGTAACTTTTGCCTTTGGAGCTACTCGATTGCCAAATGATGAAGTGCAAACTTTGAAAGGCATAGCAAAGACACTGGGGAAGACGGGCTGGGATTTCAGTGGAGACGCAGATCCATGCAGCGGCCAATCTCCATGGACTAATACAAGCTCACCGAAAGAAATTCAGAATACCATCATCTGTCATTGCTCCGATGAAAACTCCACTGTCTGCCATATTACCAACATAATTCTAAAAGCCCAAGATTTGAAAGGAACACTCCCACTAGAGCTGGTAGATCTCACCTATCTTCAAGAAATCGACCTGACCCGCAACTACCTGAGCGGTACCATCCCTCCAGAATGGAGCTCTCTTCCACTTTTGAACATATCCCTTCTTGGAAATCGTTTGACCGGTTCTATCCCCAAAGAGCTCGGAAACATCACCACCCTGAAGAGTTTGGACATCAGTTTCAATAATTTCTCTGGACCTCTCCCTCAGGAGCTTGGATCTTGGGCCCACATAGAAAGATTGCTGCTTTGCTCAAACAACTTTACTGGGGAGTTGCCAGAAACATTTGCAAAGCTTACCAAAATAAAGGACTTTCGGGTTAGTGACAGTCACTTTTTCGGGCAGATACCTGATTTTATTAAGAACTGGGCAAATCTTGAAAAACTAGTGATTCAGGCTAGCGGTTTGACAGGGCCAATTCCTCCTGGCATTTCTCGTTTGACAAACTTAACTGACTTGAGAATCACTGACTTGAGTGGACCTGAATCACCCATTCCTTCGCTCGAGAAGATGAAAAACATGAAGACACTGATGTTGAGGAGTTGCAACCTTACTGGAAAGATACCTCTATATCTTGCACAAATGAAAAACTTGAAAACTTTAGACCTCAGCTTTAACAAGCTGACCGGAGAAATTCCAAGCAGCTTCGATAGTCTACCAAATGTGGCTTATATATTCTTAACTGGAAACTTGCTGACTGGACCTGTACCTGCTTGGCCAAGAGTCAACGTTGATCTTTCGTATAACAACCTCGCCATAGAGGATGCAAGTTGTCAACCACGAGGTGGCACTAACTTGTTTGCAAGCTCGTCAAAAGGAAATAGTTCGTAA

Protein Analysis

386

Amino Acids

42.3

Weight (kDa)

6.23

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 155 - 264 7e-07 Leucine-rich repeat region
LRR_4 PF12799 281 - 318 4.3e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 282 - 341 6.4e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1045
Acc65I GGTACC 1 cut(s) 383
AccB1I GGYRCC 1 cut(s) 383
AccB7I CCANNNNNTGG 1 cut(s) 1112
AccBSI CCGCTC 1 cut(s) 381
AccI GTMKAC 1 cut(s) 982
AciI CCGC 4 cut(s) 180, 367, 381, 729
AclI AACGTT 1 cut(s) 1056
AclWI GGATC 2 cut(s) 164, 553
AcoI YGGCCR 2 cut(s) 181, 1043
AcsI RAATTY 2 cut(s) 219, 960
AcuI CTGAAG 1 cut(s) 509
AdeI CACNNNGTG 1 cut(s) 1112
AfaI GTAC 2 cut(s) 385, 1035
AfiI CCNNNNNNNGG 2 cut(s) 179, 1112
AgeI ACCGGT 1 cut(s) 449
AgsI TTSAA 7 cut(s) 115, 307, 350, 421, 511, 707, 922
AhlI ACTAGT 1 cut(s) 712
AjnI CCWGG 1 cut(s) 751
Alw21I GWGCWC 2 cut(s) 407, 471
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 2 cut(s) 164, 553
Ama87I CYCGRG 1 cut(s) 830
AoxI GGCC 4 cut(s) 181, 552, 740, 1043
ApaI GGGCCC 1 cut(s) 556
ApeKI GCWGC 3 cut(s) 177, 571, 969
ApoI RAATTY 2 cut(s) 219, 960
AsiGI ACCGGT 1 cut(s) 449
Asp700I GAANNNNTTC 1 cut(s) 1150
Asp718I GGTACC 1 cut(s) 383
AspS9I GGNCC 6 cut(s) 524, 552, 553, 740, 806, 1028
AsuHPI GGTGA 4 cut(s) 201, 331, 472, 807
AsuNHI GCTAGC 1 cut(s) 725
AvaI CYCGRG 1 cut(s) 830
AvaII GGWCC 3 cut(s) 524, 806, 1028
AxyI CCTNAGG 1 cut(s) 534
BaeGI GKGCMC 1 cut(s) 556
BalI TGGCCA 1 cut(s) 1045
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 3 cut(s) 407, 471, 556
BauI CACGAG 1 cut(s) 1107
BbsI GAAGAC 2 cut(s) 146, 857
Bbv12I GWGCWC 2 cut(s) 407, 471
BbvCI CCTCAGC 1 cut(s) 935
BbvI GCAGC 3 cut(s) 189, 558, 981
BccI CCATC 2 cut(s) 239, 395
BciT130I CCWGG 1 cut(s) 753
BcoDI GTCTC 1 cut(s) 156
BcuI ACTAGT 1 cut(s) 712
BfaI CTAG 3 cut(s) 323, 713, 726
BfuAI ACCTGC 1 cut(s) 1045
BglII AGATCT 1 cut(s) 334
BisI GCNGC 4 cut(s) 178, 181, 572, 970
BlsI GCNGC 4 cut(s) 179, 182, 573, 971
Bme1390I CCNGG 1 cut(s) 753
Bme18I GGWCC 3 cut(s) 524, 806, 1028
BmeT110I CYCGRG 1 cut(s) 830
BmgT120I GGNCC 6 cut(s) 524, 552, 553, 740, 806, 1028
BmiI GGNNCC 2 cut(s) 385, 554
BmrFI CCNGG 1 cut(s) 753
BmrI ACTGGG 3 cut(s) 143, 603, 703
BmsI GCATC 1 cut(s) 1081
BmtI GCTAGC 1 cut(s) 729
BmuI ACTGGG 3 cut(s) 143, 603, 703
BpiI GAAGAC 2 cut(s) 146, 857
BpmI CTGGAG 1 cut(s) 378
Bpu10I CCTNAGC 2 cut(s) 377, 935
BpuEI CTTGAG 2 cut(s) 805, 820
BsaJI CCNNGG 1 cut(s) 191
BsaWI WCCGGW 2 cut(s) 449, 953
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 1112
Bse118I RCCGGY 1 cut(s) 449
Bse1I ACTGG 6 cut(s) 138, 598, 698, 886, 1015, 1030
Bse21I CCTNAGG 1 cut(s) 534
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 753
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 2 cut(s) 387, 1096
BseLI CCNNNNNNNGG 2 cut(s) 179, 1112
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 3 cut(s) 368, 548, 949
BseNI ACTGG 6 cut(s) 138, 598, 698, 886, 1015, 1030
BseRI GAGGAG 1 cut(s) 880
BseSI GKGCMC 1 cut(s) 556
BseXI GCAGC 3 cut(s) 189, 558, 981
BseYI CCCAGC 1 cut(s) 147
BshFI GGCC 4 cut(s) 183, 554, 742, 1045
BshNI GGYRCC 1 cut(s) 383
BshTI ACCGGT 1 cut(s) 449
BsiHKAI GWGCWC 2 cut(s) 407, 471
BsiHKCI CYCGRG 1 cut(s) 830
BsiSI CCGG 2 cut(s) 450, 954
BslI CCNNNNNNNGG 2 cut(s) 179, 1112
BsmAI GTCTC 1 cut(s) 156
BsmBI CGTCTC 1 cut(s) 156
BsnI GGCC 4 cut(s) 183, 554, 742, 1045
BsoBI CYCGRG 1 cut(s) 830
Bsp120I GGGCCC 1 cut(s) 552
Bsp1286I GDGCHC 3 cut(s) 407, 471, 556
Bsp143I GATC 4 cut(s) 169, 334, 545, 1060
Bsp19I CCATGG 1 cut(s) 191
BspACI CCGC 4 cut(s) 180, 367, 381, 729
BspANI GGCC 4 cut(s) 183, 554, 742, 1045
BspCNI CTCAG 3 cut(s) 369, 547, 948
BspLI GGNNCC 2 cut(s) 385, 554
BspMI ACCTGC 1 cut(s) 1045
BspOI GCTAGC 1 cut(s) 729
BspPI GGATC 2 cut(s) 164, 553
BspT107I GGYRCC 1 cut(s) 383
BsrBI CCGCTC 1 cut(s) 381
BsrDI GCAATG 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 449
BsrI ACTGG 6 cut(s) 138, 598, 698, 886, 1015, 1030
BssAI RCCGGY 1 cut(s) 449
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 4 cut(s) 169, 334, 545, 1060
BssSI CACGAG 1 cut(s) 1107
BssT1I CCWWGG 1 cut(s) 191
Bst2BI CACGAG 1 cut(s) 1107
Bst2UI CCWGG 1 cut(s) 753
Bst4CI ACNGT 2 cut(s) 265, 656
Bst6I CTCTTC 2 cut(s) 414, 485
BstC8I GCNNGC 3 cut(s) 55, 727, 1132
BstDEI CTNAG 3 cut(s) 377, 534, 935
BstDSI CCRYGG 1 cut(s) 191
BstF5I GGATG 2 cut(s) 387, 1096
BstKTI GATC 4 cut(s) 172, 337, 548, 1063
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 4 cut(s) 169, 334, 545, 1060
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 753
BstSCI CCNGG 1 cut(s) 751
BstSLI GKGCMC 1 cut(s) 556
BstV1I GCAGC 3 cut(s) 189, 558, 981
BstV2I GAAGAC 2 cut(s) 146, 857
BstX2I RGATCY 3 cut(s) 169, 334, 545
BstYI RGATCY 3 cut(s) 169, 334, 545
Bsu36I CCTNAGG 1 cut(s) 534
BsuRI GGCC 4 cut(s) 183, 554, 742, 1045
BtgI CCRYGG 1 cut(s) 191
BtsCI GGATG 2 cut(s) 387, 1096
BtsIMutI CAGTG 5 cut(s) 131, 163, 261, 792, 854
BveI ACCTGC 1 cut(s) 1045
Cac8I GCNNGC 3 cut(s) 55, 727, 1132
Cfr10I RCCGGY 1 cut(s) 449
Cfr13I GGNCC 6 cut(s) 524, 552, 553, 740, 806, 1028
CseI GACGC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 384, 1034
CspAI ACCGGT 1 cut(s) 449
CviAII CATG 3 cut(s) 174, 192, 847
CviQI GTAC 2 cut(s) 384, 1034
DdeI CTNAG 3 cut(s) 377, 534, 935
DpnI GATC 4 cut(s) 171, 336, 547, 1062
DpnII GATC 4 cut(s) 169, 334, 545, 1060
DraIII CACNNNGTG 1 cut(s) 1112
EaeI YGGCCR 2 cut(s) 181, 1043
Eam1104I CTCTTC 2 cut(s) 414, 485
EarI CTCTTC 2 cut(s) 414, 485
Ecl136II GAGCTC 2 cut(s) 405, 469
Eco130I CCWWGG 1 cut(s) 191
Eco24I GRGCYC 3 cut(s) 407, 471, 556
Eco47I GGWCC 3 cut(s) 524, 806, 1028
Eco53kI GAGCTC 2 cut(s) 405, 469
Eco57I CTGAAG 1 cut(s) 509
Eco81I CCTNAGG 1 cut(s) 534
Eco88I CYCGRG 1 cut(s) 830
EcoICRI GAGCTC 2 cut(s) 405, 469
EcoRII CCWGG 1 cut(s) 751
EcoT14I CCWWGG 1 cut(s) 191
EcoT38I GRGCYC 3 cut(s) 407, 471, 556
ErhI CCWWGG 1 cut(s) 191
Esp3I CGTCTC 1 cut(s) 156
FaeI CATG 3 cut(s) 177, 195, 850
FatI CATG 3 cut(s) 173, 191, 846
FauI CCCGC 1 cut(s) 374
FblI GTMKAC 1 cut(s) 982
Fnu4HI GCNGC 4 cut(s) 178, 181, 572, 970
FokI GGATG 2 cut(s) 374, 1103
FriOI GRGCYC 3 cut(s) 407, 471, 556
Fsp4HI GCNGC 4 cut(s) 178, 181, 572, 970
FspBI CTAG 3 cut(s) 323, 713, 726
GluI GCNGC 4 cut(s) 178, 181, 572, 970
GsaI CCCAGC 1 cut(s) 151
GsuI CTGGAG 1 cut(s) 378
HaeIII GGCC 4 cut(s) 183, 554, 742, 1045
HapII CCGG 2 cut(s) 450, 954
HgaI GACGC 1 cut(s) 173
Hin1II CATG 3 cut(s) 177, 195, 850
HincII GTYRAC 2 cut(s) 1054, 1103
HindII GTYRAC 2 cut(s) 1054, 1103
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 4 cut(s) 718, 789, 812, 1050
HpaII CCGG 2 cut(s) 450, 954
HphI GGTGA 4 cut(s) 201, 331, 472, 807
Hpy166II GTNNAC 4 cut(s) 806, 983, 1054, 1103
Hpy188I TCNGA 3 cut(s) 225, 250, 473
Hpy188III TCNNGA 6 cut(s) 350, 395, 522, 536, 704, 832
Hpy8I GTNNAC 4 cut(s) 806, 983, 1054, 1103
HpyAV CCTTC 2 cut(s) 440, 834
HpyCH4III ACNGT 2 cut(s) 265, 656
HpyCH4IV ACGT 1 cut(s) 1056
HpyCH4V TGCA 7 cut(s) 106, 177, 617, 873, 905, 1094, 1130
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 3 cut(s) 377, 534, 935
HpySE526I ACGT 1 cut(s) 1056
Hsp92II CATG 3 cut(s) 177, 195, 850
KpnI GGTACC 1 cut(s) 387
Kzo9I GATC 4 cut(s) 169, 334, 545, 1060
LmnI GCTCC 4 cut(s) 77, 251, 402, 538
Lsp1109I GCAGC 3 cut(s) 189, 558, 981
LweI GCATC 1 cut(s) 1081
MaeI CTAG 3 cut(s) 323, 713, 726
MaeII ACGT 1 cut(s) 1056
MaeIII GTNAC 3 cut(s) 61, 650, 656
MalI GATC 4 cut(s) 171, 336, 547, 1062
MbiI CCGCTC 1 cut(s) 381
MboI GATC 4 cut(s) 169, 334, 545, 1060
MboII GAAGA 8 cut(s) 7, 20, 151, 338, 401, 502, 847, 862
MflI RGATCY 3 cut(s) 169, 334, 545
MhlI GDGCHC 3 cut(s) 407, 471, 556
MlsI TGGCCA 1 cut(s) 1045
MluCI AATT 5 cut(s) 219, 285, 514, 744, 960
MluNI TGGCCA 1 cut(s) 1045
MlyI GAGTC 1 cut(s) 1059
Mox20I TGGCCA 1 cut(s) 1045
MroXI GAANNNNTTC 1 cut(s) 1150
MscI TGGCCA 1 cut(s) 1045
MseI TTAA 4 cut(s) 687, 776, 942, 1007
Msp20I TGGCCA 1 cut(s) 1045
MspA1I CMGCKG 1 cut(s) 180
MspI CCGG 2 cut(s) 450, 954
MspR9I CCNGG 1 cut(s) 753
MvaI CCWGG 1 cut(s) 753
MwoI GCNNNNNNNGC 1 cut(s) 77
NcoI CCATGG 1 cut(s) 191
NdeII GATC 4 cut(s) 169, 334, 545, 1060
NheI GCTAGC 1 cut(s) 725
NlaIII CATG 3 cut(s) 177, 195, 850
NlaIV GGNNCC 2 cut(s) 385, 554
NmuCI GTSAC 2 cut(s) 650, 656
PaeR7I CTCGAG 1 cut(s) 830
PdmI GAANNNNTTC 1 cut(s) 1150
PfeI GAWTC 3 cut(s) 718, 789, 812
PflMI CCANNNNNTGG 1 cut(s) 1112
PinAI ACCGGT 1 cut(s) 449
PkrI GCNGC 4 cut(s) 179, 182, 573, 971
PleI GAGTC 1 cut(s) 1058
PpsI GAGTC 1 cut(s) 1058
Psp124BI GAGCTC 2 cut(s) 407, 471
Psp1406I AACGTT 1 cut(s) 1056
Psp6I CCWGG 1 cut(s) 751
PspFI CCCAGC 1 cut(s) 147
PspGI CCWGG 1 cut(s) 751
PspN4I GGNNCC 2 cut(s) 385, 554
PspOMI GGGCCC 1 cut(s) 552
PspPI GGNCC 6 cut(s) 524, 552, 553, 740, 806, 1028
PsuI RGATCY 3 cut(s) 169, 334, 545
RsaI GTAC 2 cut(s) 385, 1035
RsaNI GTAC 2 cut(s) 384, 1034
SacI GAGCTC 2 cut(s) 407, 471
SaqAI TTAA 4 cut(s) 687, 776, 942, 1007
SatI GCNGC 4 cut(s) 178, 181, 572, 970
Sau3AI GATC 4 cut(s) 169, 334, 545, 1060
Sau96I GGNCC 6 cut(s) 524, 552, 553, 740, 806, 1028
SchI GAGTC 1 cut(s) 1059
ScrFI CCNGG 1 cut(s) 753
SduI GDGCHC 3 cut(s) 407, 471, 556
SfaNI GCATC 1 cut(s) 1081
Sfr274I CTCGAG 1 cut(s) 830
SinI GGWCC 3 cut(s) 524, 806, 1028
SlaI CTCGAG 1 cut(s) 830
SmlI CTYRAG 3 cut(s) 784, 799, 830
SmoI CTYRAG 3 cut(s) 784, 799, 830
SpeI ACTAGT 1 cut(s) 712
Sse9I AATT 5 cut(s) 219, 285, 514, 744, 960
SsiI CCGC 4 cut(s) 180, 367, 381, 729
SspMI CTAG 3 cut(s) 323, 713, 726
SstI GAGCTC 2 cut(s) 407, 471
StyD4I CCNGG 1 cut(s) 751
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 2 cut(s) 265, 656
TaiI ACGT 1 cut(s) 1059
TaqI TCGA 5 cut(s) 22, 85, 357, 831, 975
TasI AATT 5 cut(s) 219, 285, 514, 744, 960
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 3 cut(s) 718, 789, 812
Tru1I TTAA 4 cut(s) 687, 776, 942, 1007
Tru9I TTAA 4 cut(s) 687, 776, 942, 1007
TscAI CASTG 5 cut(s) 138, 163, 268, 799, 861
TseFI GTSAC 2 cut(s) 650, 656
TseI GCWGC 3 cut(s) 177, 571, 969
Tsp45I GTSAC 2 cut(s) 650, 656
TspDTI ATGAA 5 cut(s) 114, 267, 854, 863, 926
TspRI CASTG 5 cut(s) 138, 163, 268, 799, 861
Van91I CCANNNNNTGG 1 cut(s) 1112
VpaK11BI GGWCC 3 cut(s) 524, 806, 1028
XapI RAATTY 2 cut(s) 219, 960
XhoI CTCGAG 1 cut(s) 830
XmiI GTMKAC 1 cut(s) 982
XmnI GAANNNNTTC 1 cut(s) 1150
XspI CTAG 3 cut(s) 323, 713, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.