Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003368.1

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Forward (+)

261568 .. 264314

Gene Structure 2747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003368.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atgaagcgcagacttttgaaatctcagaatttgccgggaaaactcccgccagagttgatcaggctcccctatctccaagaaatcgacctcacccgcaactacctgaatggcaccatccctccaaaatggggctccctgccactagttcacattggtcttggtgcaaaccgtttgacaggttctatccctgttgagctaggaaacatcaccacgctcgaaagtttgaccatcgatttcaatagcttctctggagttcttcctgcggagcttggaaatttgtctagcataaaaagaatgtctcttacctccaacaattttactggggagttgccagaaacatttgcaaagcttaccaccttaactgacttttggattagtgacagttccttttctgggaagatacctggttttattcagagctggacaaatcttgagggactagtgattcaggctagtggttttacagggccaattccttccggcatttctctcttgacaagattaactgacctgagaattactgacttgaatggatctgaatcatcctttcctgtacttgataatatgaaaagcctggagacattggtgttgcgaaactgcaatattagtgggcagctacctgaatatcttgggaacatgtcgactttaaaaattttagaccttagttttaacaagctaactggagatatcccaaacaactttgctggtctaggaaatctggataatatgttcttaactggaaacatgctgaccggaactgtgccagctgattggatgaaagccaatagcattgatctttcatataacaaattcaccatcaactcaaatgatgagaattgtgaaccacgagatggcttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

286

Amino Acids

31.29

Weight (kDa)

5.02

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	110
AccB7I	CCANNNNNTGG	1 cut(s)	851
AccI	GTMKAC	1 cut(s)	641
AciI	CCGC	3 cut(s)	47, 94, 263
AclWI	GGATC	1 cut(s)	541
AcsI	RAATTY	4 cut(s)	28, 274, 651, 809
AfaI	GTAC	1 cut(s)	555
AfiI	CCNNNNNNNGG	3 cut(s)	128, 393, 851
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	3 cut(s)	19, 238, 529
AhlI	ACTAGT	2 cut(s)	142, 439
AjnI	CCWGG	2 cut(s)	403, 573
AloI	GAACNNNNNNTCC	2 cut(s)	713, 745
AluBI	AGCT	8 cut(s)	196, 243, 268, 349, 420, 616, 676, 767
AluI	AGCT	8 cut(s)	196, 243, 268, 349, 420, 616, 676, 767
Alw26I	GTCTC	2 cut(s)	303, 572
AlwI	GGATC	1 cut(s)	541
AoxI	GGCC	1 cut(s)	467
ApeKI	GCWGC	1 cut(s)	613
ApoI	RAATTY	4 cut(s)	28, 274, 651, 809
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	467
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	82, 199, 805
BanI	GGYRCC	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	134
BauI	CACGAG	1 cut(s)	846
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	4 cut(s)	122, 236, 824, 845
BciT130I	CCWGG	2 cut(s)	405, 575
BclI	TGATCA	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	2 cut(s)	303, 572
BcuI	ACTAGT	2 cut(s)	142, 439
BfaI	CTAG	6 cut(s)	143, 197, 282, 440, 453, 710
BisI	GCNGC	1 cut(s)	614
BlsI	GCNGC	1 cut(s)	615
Bme1390I	CCNGG	3 cut(s)	36, 405, 575
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	3 cut(s)	65, 112, 133
BmrFI	CCNGG	3 cut(s)	36, 405, 575
BmrI	ACTGGG	1 cut(s)	330
BmuI	ACTGGG	1 cut(s)	330
BpmI	CTGGAG	3 cut(s)	270, 596, 702
BpuEI	CTTGAG	1 cut(s)	452
BpuMI	CCSGG	1 cut(s)	36
Bsa29I	ATCGAT	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	538
BsaWI	WCCGGW	1 cut(s)	752
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 393, 851
Bse1I	ACTGG	3 cut(s)	325, 685, 742
Bse8I	GATNNNNATC	1 cut(s)	538
BseBI	CCWGG	2 cut(s)	405, 575
BseCI	ATCGAT	1 cut(s)	231
BseGI	GGATG	3 cut(s)	114, 542, 780
BseJI	GATNNNNATC	1 cut(s)	538
BseLI	CCNNNNNNNGG	3 cut(s)	128, 393, 851
BseMII	CTCAG	2 cut(s)	38, 503
BseNI	ACTGG	3 cut(s)	325, 685, 742
BseXI	GCAGC	1 cut(s)	625
BshFI	GGCC	1 cut(s)	469
BshNI	GGYRCC	1 cut(s)	110
BshVI	ATCGAT	1 cut(s)	231
BsiSI	CCGG	3 cut(s)	35, 480, 753
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	3 cut(s)	128, 393, 851
BsmAI	GTCTC	2 cut(s)	303, 572
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	57, 533, 793
BspACI	CCGC	3 cut(s)	47, 94, 263
BspANI	GGCC	1 cut(s)	469
BspCNI	CTCAG	2 cut(s)	37, 504
BspDI	ATCGAT	1 cut(s)	231
BspLI	GGNNCC	3 cut(s)	65, 112, 133
BspPI	GGATC	1 cut(s)	541
BspT107I	GGYRCC	1 cut(s)	110
BsrI	ACTGG	3 cut(s)	325, 685, 742
BssMI	GATC	3 cut(s)	57, 533, 793
BssSI	CACGAG	1 cut(s)	846
Bst2BI	CACGAG	1 cut(s)	846
Bst2UI	CCWGG	2 cut(s)	405, 575
Bst4CI	ACNGT	3 cut(s)	170, 383, 760
BstC8I	GCNNGC	1 cut(s)	765
BstDEI	CTNAG	3 cut(s)	24, 512, 662
BstF5I	GGATG	3 cut(s)	114, 542, 780
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	3 cut(s)	60, 536, 796
BstMAI	GTCTC	2 cut(s)	303, 572
BstMBI	GATC	3 cut(s)	57, 533, 793
BstNI	CCWGG	2 cut(s)	405, 575
BstNSI	RCATGY	2 cut(s)	640, 748
BstSCI	CCNGG	3 cut(s)	34, 403, 573
BstV1I	GCAGC	1 cut(s)	625
BstX2I	RGATCY	1 cut(s)	533
BstXI	CCANNNNNNTGG	1 cut(s)	771
BstYI	RGATCY	1 cut(s)	533
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	469
BsuTUI	ATCGAT	1 cut(s)	231
BtsCI	GGATG	3 cut(s)	114, 542, 780
Cac8I	GCNNGC	1 cut(s)	765
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	467
ClaI	ATCGAT	1 cut(s)	231
CsiI	ACCWGGT	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	554
CspCI	CAANNNNNGTGG	2 cut(s)	589, 624
CviAII	CATG	2 cut(s)	637, 745
CviQI	GTAC	1 cut(s)	554
DdeI	CTNAG	3 cut(s)	24, 512, 662
DpnI	GATC	3 cut(s)	59, 535, 795
DpnII	GATC	3 cut(s)	57, 533, 793
DraI	TTTAAA	1 cut(s)	648
Eco24I	GRGCYC	1 cut(s)	134
Eco32I	GATATC	1 cut(s)	688
EcoRII	CCWGG	2 cut(s)	403, 573
EcoRV	GATATC	1 cut(s)	688
EcoT38I	GRGCYC	1 cut(s)	134
FaeI	CATG	2 cut(s)	640, 748
FaiI	YATR	7 cut(s)	287, 566, 638, 728, 746, 802, 804
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	2 cut(s)	636, 744
FauI	CCCGC	2 cut(s)	54, 101
FbaI	TGATCA	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	641
Fnu4HI	GCNGC	1 cut(s)	614
FokI	GGATG	3 cut(s)	101, 529, 787
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	614
FspBI	CTAG	6 cut(s)	143, 197, 282, 440, 453, 710
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	1 cut(s)	614
GsuI	CTGGAG	3 cut(s)	270, 596, 702
HaeIII	GGCC	1 cut(s)	469
HapII	CCGG	3 cut(s)	35, 480, 753
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	640, 748
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	2 cut(s)	445, 539
HpaII	CCGG	3 cut(s)	35, 480, 753
HphI	GGTGA	3 cut(s)	82, 199, 805
Hpy166II	GTNNAC	3 cut(s)	148, 642, 842
Hpy188I	TCNGA	3 cut(s)	27, 417, 538
Hpy188III	TCNNGA	4 cut(s)	249, 431, 493, 719
Hpy8I	GTNNAC	3 cut(s)	148, 642, 842
HpyAV	CCTTC	1 cut(s)	486
HpyCH4III	ACNGT	3 cut(s)	170, 383, 760
HpyCH4V	TGCA	3 cut(s)	164, 344, 600
HpyF3I	CTNAG	3 cut(s)	24, 512, 662
Hsp92II	CATG	2 cut(s)	640, 748
HspAI	GCGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	57, 533, 793
LmnI	GCTCC	3 cut(s)	69, 137, 265
Lsp1109I	GCAGC	1 cut(s)	625
MabI	ACCWGGT	1 cut(s)	403
MaeI	CTAG	6 cut(s)	143, 197, 282, 440, 453, 710
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	3 cut(s)	59, 535, 795
MboI	GATC	3 cut(s)	57, 533, 793
MboII	GAAGA	2 cut(s)	248, 409
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	8 cut(s)	28, 274, 313, 471, 516, 651, 809, 835
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	4 cut(s)	98, 129, 316, 427
MseI	TTAA	5 cut(s)	359, 503, 647, 669, 734
MspA1I	CMGCKG	1 cut(s)	767
MspI	CCGG	3 cut(s)	35, 480, 753
MspR9I	CCNGG	3 cut(s)	36, 405, 575
MvaI	CCWGG	2 cut(s)	405, 575
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	3 cut(s)	57, 533, 793
NlaIII	CATG	2 cut(s)	640, 748
NlaIV	GGNNCC	3 cut(s)	65, 112, 133
NmuCI	GTSAC	1 cut(s)	377
NspI	RCATGY	2 cut(s)	640, 748
PciI	ACATGT	1 cut(s)	636
PfeI	GAWTC	2 cut(s)	445, 539
PflMI	CCANNNNNTGG	1 cut(s)	851
PkrI	GCNGC	1 cut(s)	615
PscI	ACATGT	1 cut(s)	636
Psp6I	CCWGG	2 cut(s)	403, 573
PspGI	CCWGG	2 cut(s)	403, 573
PspN4I	GGNNCC	3 cut(s)	65, 112, 133
PspPI	GGNCC	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	533
PvuII	CAGCTG	1 cut(s)	767
RsaI	GTAC	1 cut(s)	555
RsaNI	GTAC	1 cut(s)	554
SalI	GTCGAC	1 cut(s)	640
SaqAI	TTAA	5 cut(s)	359, 503, 647, 669, 734
SatI	GCNGC	1 cut(s)	614
Sau3AI	GATC	3 cut(s)	57, 533, 793
Sau96I	GGNCC	1 cut(s)	467
ScrFI	CCNGG	3 cut(s)	36, 405, 575
SduI	GDGCHC	1 cut(s)	134
SexAI	ACCWGGT	1 cut(s)	403
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
SpeI	ACTAGT	2 cut(s)	142, 439
Sse9I	AATT	8 cut(s)	28, 274, 313, 471, 516, 651, 809, 835
SsiI	CCGC	3 cut(s)	47, 94, 263
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	6 cut(s)	143, 197, 282, 440, 453, 710
StyD4I	CCNGG	3 cut(s)	34, 403, 573
TaaI	ACNGT	3 cut(s)	170, 383, 760
TaqI	TCGA	4 cut(s)	84, 216, 231, 641
TasI	AATT	8 cut(s)	28, 274, 313, 471, 516, 651, 809, 835
TatI	WGTACW	1 cut(s)	553
TfiI	GAWTC	2 cut(s)	445, 539
Tru1I	TTAA	5 cut(s)	359, 503, 647, 669, 734
Tru9I	TTAA	5 cut(s)	359, 503, 647, 669, 734
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	1 cut(s)	613
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	4 cut(s)	17, 581, 789, 791
Van91I	CCANNNNNTGG	1 cut(s)	851
XapI	RAATTY	4 cut(s)	28, 274, 651, 809
XceI	RCATGY	2 cut(s)	640, 748
XmiI	GTMKAC	1 cut(s)	641
XspI	CTAG	6 cut(s)	143, 197, 282, 440, 453, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.