Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

24491638 .. 24504976

Gene Structure 13339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG207900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTTAAACGTTTTGGCCGCCGGCCAAAATATGAGTTACACATTCTTCTTTCGTAGGCTTCTTGTTTATTCTATCTTGCTGGTTATCTTTGCAAGCTTTGCTCTCGGAGCTACTCGATTATCAGAAGTTGAAGTACAAGCTTTAAAGATCATTGGAAAGACATTGGGGAAGGACCGGAATTTCACTGCAGATCCGTGTAGCAGCGAAGCATCTAGATGGATTGATAGTACCTCAACAGACAGCGAAGCTACGAATAACGTCACCTGCGGCAATTGTATTACTGCTGGCGACGATCAGATCTGCCATGTTACAAGCATATCTCTGAAAGCTCAGAATTTGGCAGGAACACTCCCACCAGAGTTGGCGAGGCTTCCCTATCTACAAATAATTTCCCTTGTTGGAAACCGTTTGACAGGTTCTATCCCCATTGAGATCGGAAACATAAGCACCCTGCAAAGTTTGGACATCACTGCCAATAATTTTTCAGGACTGCTTCCTCTGGAGCTTGGGAATTTAACCAGCATAGACAGAATGCTTCTTTCCTCGAACAATTTTACTGGGAAGTTGCCCGAAACATTTGCAAGGCTTACCACATTAACGGACTTTCGGGTTGGTGACAGTAACTTTTCTGGGAAGATACCTGATTTCATTCAGAACTGGAAAAATCTTTCAAAACTGAGAATTACTGACTTGGATGGACCTGAAGCACCTTTTCCTCAACTTGATAATATGAAAAATCTGAAAACACTGATGTTGAGGAATTGCAATCTTACTGGAGAACTACCTAAGTATCTTGCAGATATGACAGAGTTGAAAACCTTGTTCTTAACTGGAAACTTGCTGGATGGAACACTGCCTGAATCGCAGAAAAGAAACAACATTGATCTTTCATACAACAACATGACCACTAGTGAGACCGACGGTTGTGGCGGTGGCGGCAGGCCCAAAGGAAAGTCAGGTGAAGTTGGGCTGGCCAACAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

328

Amino Acids

35.61

Weight (kDa)

5.63

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	110 - 275	1.7e-10	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	272
AciI	CCGC	4 cut(s)	18, 267, 930, 936
AclI	AACGTT	1 cut(s)	9
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	3 cut(s)	15, 22, 972
AcsI	RAATTY	3 cut(s)	178, 334, 511
AcuI	CTGAAG	1 cut(s)	723
AfaI	GTAC	2 cut(s)	135, 229
AgsI	TTSAA	3 cut(s)	131, 672, 814
AhlI	ACTAGT	1 cut(s)	908
AluBI	AGCT	6 cut(s)	96, 110, 140, 248, 329, 505
AluI	AGCT	6 cut(s)	96, 110, 140, 248, 329, 505
Alw26I	GTCTC	1 cut(s)	908
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	4 cut(s)	15, 22, 941, 972
ApeKI	GCWGC	1 cut(s)	201
ApoI	RAATTY	3 cut(s)	178, 334, 511
AspS9I	GGNCC	3 cut(s)	172, 698, 942
AsuHPI	GGTGA	3 cut(s)	253, 626, 971
AvaII	GGWCC	2 cut(s)	172, 698
BaeI	ACNNNNGTAYC	2 cut(s)	773, 806
BalI	TGGCCA	1 cut(s)	974
BarI	GAAGNNNNNNTAC	2 cut(s)	117, 149
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	3 cut(s)	210, 689, 839
BcgI	CGANNNNNNTGC	2 cut(s)	560, 594
BcoDI	GTCTC	1 cut(s)	908
BcuI	ACTAGT	1 cut(s)	908
BfaI	CTAG	2 cut(s)	213, 909
BfmI	CTRYAG	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	272
BglI	GCCNNNNNGGC	1 cut(s)	980
BglII	AGATCT	1 cut(s)	297
BisI	GCNGC	4 cut(s)	18, 202, 268, 937
BlsI	GCNGC	4 cut(s)	19, 203, 269, 938
Bme18I	GGWCC	2 cut(s)	172, 698
BmgT120I	GGNCC	3 cut(s)	172, 698, 942
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	1 cut(s)	218
BmuI	ACTGGG	1 cut(s)	567
BpmI	CTGGAG	2 cut(s)	521, 795
BsaI	GGTCTC	1 cut(s)	908
BsaWI	WCCGGW	1 cut(s)	174
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	4 cut(s)	562, 662, 778, 835
BseGI	GGATG	2 cut(s)	700, 850
BseMII	CTCAG	2 cut(s)	344, 668
BseNI	ACTGG	4 cut(s)	562, 662, 778, 835
BseXI	GCAGC	1 cut(s)	213
BshFI	GGCC	4 cut(s)	17, 24, 943, 974
BsiSI	CCGG	2 cut(s)	21, 175
BsmAI	GTCTC	1 cut(s)	908
BsmI	GAATGC	1 cut(s)	537
BsnI	GGCC	4 cut(s)	17, 24, 943, 974
Bso31I	GGTCTC	1 cut(s)	908
Bsp143I	GATC	6 cut(s)	147, 190, 292, 297, 432, 883
BspACI	CCGC	4 cut(s)	18, 267, 930, 936
BspANI	GGCC	4 cut(s)	17, 24, 943, 974
BspCNI	CTCAG	2 cut(s)	343, 669
BspMAI	CTGCAG	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	272
BspPI	GGATC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	908
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	4 cut(s)	562, 662, 778, 835
BssAI	RCCGGY	1 cut(s)	20
BssMI	GATC	6 cut(s)	147, 190, 292, 297, 432, 883
Bst4CI	ACNGT	3 cut(s)	407, 620, 923
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	5 cut(s)	22, 94, 286, 941, 972
BstDEI	CTNAG	3 cut(s)	330, 677, 786
BstF5I	GGATG	2 cut(s)	700, 850
BstKTI	GATC	6 cut(s)	150, 193, 295, 300, 435, 886
BstMAI	GTCTC	1 cut(s)	908
BstMBI	GATC	6 cut(s)	147, 190, 292, 297, 432, 883
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 107, 862, 936, 980
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	213
BstX2I	RGATCY	2 cut(s)	190, 297
BstYI	RGATCY	2 cut(s)	190, 297
BsuRI	GGCC	4 cut(s)	17, 24, 943, 974
BtsCI	GGATG	2 cut(s)	700, 850
BtsI	GCAGTG	3 cut(s)	183, 468, 851
BtsIMutI	CAGTG	4 cut(s)	183, 468, 746, 851
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	5 cut(s)	22, 94, 286, 941, 972
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	3 cut(s)	172, 698, 942
Csp6I	GTAC	2 cut(s)	134, 228
CspCI	CAANNNNNGTGG	2 cut(s)	342, 377
CviAII	CATG	2 cut(s)	305, 901
CviQI	GTAC	2 cut(s)	134, 228
DdeI	CTNAG	3 cut(s)	330, 677, 786
DpnI	GATC	6 cut(s)	149, 192, 294, 299, 434, 885
DpnII	GATC	6 cut(s)	147, 190, 292, 297, 432, 883
DraI	TTTAAA	1 cut(s)	144
EaeI	YGGCCR	3 cut(s)	15, 22, 972
Eco31I	GGTCTC	1 cut(s)	908
Eco47I	GGWCC	2 cut(s)	172, 698
Eco57I	CTGAAG	1 cut(s)	723
FaeI	CATG	2 cut(s)	308, 904
FatI	CATG	2 cut(s)	304, 900
Fnu4HI	GCNGC	4 cut(s)	18, 202, 268, 937
FokI	GGATG	2 cut(s)	707, 857
Fsp4HI	GCNGC	4 cut(s)	18, 202, 268, 937
FspBI	CTAG	2 cut(s)	213, 909
GluI	GCNGC	4 cut(s)	18, 202, 268, 937
GsuI	CTGGAG	2 cut(s)	521, 795
HaeIII	GGCC	4 cut(s)	17, 24, 943, 974
HapII	CCGG	2 cut(s)	21, 175
Hin1II	CATG	2 cut(s)	308, 904
HindIII	AAGCTT	2 cut(s)	94, 138
HinfI	GANTC	1 cut(s)	860
HpaII	CCGG	2 cut(s)	21, 175
HphI	GGTGA	3 cut(s)	253, 626, 971
Hpy188I	TCNGA	8 cut(s)	107, 124, 297, 324, 333, 437, 654, 741
Hpy188III	TCNNGA	3 cut(s)	213, 486, 500
Hpy99I	CGWCG	2 cut(s)	293, 923
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	3 cut(s)	407, 620, 923
HpyCH4IV	ACGT	2 cut(s)	9, 258
HpyCH4V	TGCA	6 cut(s)	92, 188, 454, 581, 765, 797
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 107, 862, 936, 980
HpyF3I	CTNAG	3 cut(s)	330, 677, 786
HpySE526I	ACGT	2 cut(s)	9, 258
Hsp92II	CATG	2 cut(s)	308, 904
KroI	GCCGGC	1 cut(s)	20
KroNI	GCCGGC	1 cut(s)	22
Kzo9I	GATC	6 cut(s)	147, 190, 292, 297, 432, 883
LmnI	GCTCC	2 cut(s)	107, 502
Lsp1109I	GCAGC	1 cut(s)	213
LweI	GCATC	1 cut(s)	218
MaeI	CTAG	2 cut(s)	213, 909
MaeII	ACGT	2 cut(s)	9, 258
MaeIII	GTNAC	5 cut(s)	35, 259, 307, 614, 620
MalI	GATC	6 cut(s)	149, 192, 294, 299, 434, 885
MboI	GATC	6 cut(s)	147, 190, 292, 297, 432, 883
MboII	GAAGA	2 cut(s)	37, 646
MfeI	CAATTG	1 cut(s)	271
MflI	RGATCY	2 cut(s)	190, 297
MlsI	TGGCCA	1 cut(s)	974
MluCI	AATT	9 cut(s)	178, 271, 334, 387, 478, 511, 550, 681, 760
MluNI	TGGCCA	1 cut(s)	974
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	6 cut(s)	241, 360, 507, 553, 726, 750
Mox20I	TGGCCA	1 cut(s)	974
MroNI	GCCGGC	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	974
MseI	TTAA	5 cut(s)	5, 143, 515, 596, 827
MslI	CAYNNNNRTG	1 cut(s)	214
Msp20I	TGGCCA	1 cut(s)	974
MspI	CCGG	2 cut(s)	21, 175
MunI	CAATTG	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	537
MwoI	GCNNNNNNNGC	5 cut(s)	98, 107, 862, 936, 980
NaeI	GCCGGC	1 cut(s)	22
NdeII	GATC	6 cut(s)	147, 190, 292, 297, 432, 883
NgoMIV	GCCGGC	1 cut(s)	20
NlaIII	CATG	2 cut(s)	308, 904
NmuCI	GTSAC	2 cut(s)	259, 614
PaqCI	CACCTGC	1 cut(s)	272
PctI	GAATGC	1 cut(s)	537
PdiI	GCCGGC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	860
PkrI	GCNGC	4 cut(s)	19, 203, 269, 938
Psp1406I	AACGTT	1 cut(s)	9
PspPI	GGNCC	3 cut(s)	172, 698, 942
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	2 cut(s)	190, 297
RsaI	GTAC	2 cut(s)	135, 229
RsaNI	GTAC	2 cut(s)	134, 228
RseI	CAYNNNNRTG	1 cut(s)	214
SaqAI	TTAA	5 cut(s)	5, 143, 515, 596, 827
SatI	GCNGC	4 cut(s)	18, 202, 268, 937
Sau3AI	GATC	6 cut(s)	147, 190, 292, 297, 432, 883
Sau96I	GGNCC	3 cut(s)	172, 698, 942
SfaNI	GCATC	1 cut(s)	218
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	2 cut(s)	172, 698
SmiMI	CAYNNNNRTG	1 cut(s)	214
SpeI	ACTAGT	1 cut(s)	908
Sse9I	AATT	9 cut(s)	178, 271, 334, 387, 478, 511, 550, 681, 760
SsiI	CCGC	4 cut(s)	18, 267, 930, 936
SspMI	CTAG	2 cut(s)	213, 909
TaaI	ACNGT	3 cut(s)	407, 620, 923
TaiI	ACGT	2 cut(s)	12, 261
TaqI	TCGA	2 cut(s)	115, 545
TaqII	GACCGA	1 cut(s)	932
TasI	AATT	9 cut(s)	178, 271, 334, 387, 478, 511, 550, 681, 760
TatI	WGTACW	1 cut(s)	133
TauI	GCSGC	3 cut(s)	20, 270, 939
TfiI	GAWTC	1 cut(s)	860
Tru1I	TTAA	5 cut(s)	5, 143, 515, 596, 827
Tru9I	TTAA	5 cut(s)	5, 143, 515, 596, 827
TscAI	CASTG	4 cut(s)	190, 475, 753, 858
TseFI	GTSAC	2 cut(s)	259, 614
TseI	GCWGC	1 cut(s)	201
Tsp45I	GTSAC	2 cut(s)	259, 614
TspDTI	ATGAA	3 cut(s)	637, 746, 879
TspGWI	ACGGA	2 cut(s)	183, 614
TspRI	CASTG	4 cut(s)	190, 475, 753, 858
VpaK11BI	GGWCC	2 cut(s)	172, 698
XapI	RAATTY	3 cut(s)	178, 334, 511
XbaI	TCTAGA	1 cut(s)	212
XspI	CTAG	2 cut(s)	213, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.