Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

23901779 .. 23902460

Gene Structure 682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG207500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAGAATGGGTTACACTTTCTTCTTCCCTGGTCCTCTTCTTGTTCTGCCTCTCCTGCTAGTTTGCTCTGCAACTTTTGCTTTCGGAGCCACTCAATTACCAGAAGATGAAGTTGAAGCTTTAAAGGACATAGCAAAGACGCTAGGGAAGACGAACTGGAATTTCAGTGCTGATCCCTGTGGCAACGATTACGGGTGGGCTAATCTGAACCCGGCGAAAGGATTCGAAGATGCGGTCACCTGCAATTGTCCCTTAGTTCCCAATTCCACTGTCTGCCACGTCACAAGCATGTACGTATATCTCTTACTCTTAGACAATTATAAATCTCGCATACCTTTTTTCTTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.9

Weight (kDa)

4.83

Isoelectric Point (pI)

20.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	321
AarI	CACCTGC	1 cut(s)	248
Acc36I	ACCTGC	1 cut(s)	248
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	160
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	116
AjiI	CACGTC	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
AlwI	GGATC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	160
ArsI	GACNNNNNNTTYG	2 cut(s)	219, 251
Asp700I	GAANNNNTTC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	229
AsuII	TTCGAA	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	212
BfaI	CTAG	2 cut(s)	59, 143
BfuAI	ACCTGC	1 cut(s)	248
Bme1390I	CCNGG	2 cut(s)	30, 212
Bme18I	GGWCC	1 cut(s)	32
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	30, 212
BmsI	GCATC	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	155
Bpu14I	TTCGAA	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmFI	GGGAC	1 cut(s)	234
Bsp119I	TTCGAA	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	248
BspPI	GGATC	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstBAI	YACGTR	1 cut(s)	295
BstBI	TTCGAA	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	253, 310
BstEII	GGTNACC	1 cut(s)	235
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 77, 86
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	292
BstPI	GGTNACC	1 cut(s)	235
BstSCI	CCNGG	2 cut(s)	28, 210
BstSNI	TACGTA	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	155
BtrI	CACGTC	1 cut(s)	280
BtsIMutI	CAGTG	2 cut(s)	172, 267
BveI	ACCTGC	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	32
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	3 cut(s)	89, 119, 200
CviKI_1	RGCY	3 cut(s)	89, 119, 200
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	2 cut(s)	253, 310
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
DraI	TTTAAA	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco105I	TACGTA	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	32
Eco91I	GGTNACC	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	28
FaeI	CATG	1 cut(s)	292
FaiI	YATR	5 cut(s)	131, 290, 298, 321, 332
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	1 cut(s)	288
FspBI	CTAG	2 cut(s)	59, 143
HapII	CCGG	1 cut(s)	212
HgaI	GACGC	1 cut(s)	148
Hin1II	CATG	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	86, 207
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	279, 294
HpyCH4V	TGCA	2 cut(s)	71, 243
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 77, 86
HpyF3I	CTNAG	2 cut(s)	253, 310
HpySE526I	ACGT	2 cut(s)	279, 294
Hsp92II	CATG	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	8 cut(s)	15, 42, 68, 114, 142, 190, 225, 253
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	2 cut(s)	59, 143
MaeII	ACGT	2 cut(s)	279, 294
MaeIII	GTNAC	3 cut(s)	11, 235, 280
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	6 cut(s)	13, 16, 29, 116, 160, 239
MfeI	CAATTG	1 cut(s)	244
MluCI	AATT	5 cut(s)	95, 160, 244, 262, 316
MnlI	CCTC	2 cut(s)	45, 60
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	1 cut(s)	122
MslI	CAYNNNNRTG	1 cut(s)	287
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	30, 212
MunI	CAATTG	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	55, 77, 86
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	2 cut(s)	235, 280
NspI	RCATGY	1 cut(s)	292
NspV	TTCGAA	1 cut(s)	225
PaqCI	CACCTGC	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	222
Ppu21I	YACGTR	1 cut(s)	295
PsiI	TTATAA	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	28
PspEI	GGTNACC	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	32
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	122
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	30, 212
SetI	ASST	5 cut(s)	121, 242, 282, 297, 337
SfaNI	GCATC	1 cut(s)	220
SfuI	TTCGAA	1 cut(s)	225
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	287
SnaBI	TACGTA	1 cut(s)	295
Sse9I	AATT	5 cut(s)	95, 160, 244, 262, 316
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	2 cut(s)	59, 143
StyD4I	CCNGG	2 cut(s)	28, 210
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	2 cut(s)	282, 297
TaqI	TCGA	1 cut(s)	225
TasI	AATT	5 cut(s)	95, 160, 244, 262, 316
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	2 cut(s)	172, 274
TseFI	GTSAC	2 cut(s)	235, 280
Tsp45I	GTSAC	2 cut(s)	235, 280
TspDTI	ATGAA	1 cut(s)	123
TspRI	CASTG	2 cut(s)	172, 274
VpaK11BI	GGWCC	1 cut(s)	32
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	2 cut(s)	59, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.