Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

23796050 .. 23805997

Gene Structure 9948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG212200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAAGCGCAGATCTCTGAAAGCTCAGGATTTGGCGGGAACACTCCCACCAGAGTTGGCGAGGCTTCCCTATCTACAAATAATTGACCTCTCCCGCAACTATCTGAGTGGTGCCATCCCTCGAAAATGGGGCTCCCTGCCGCTAGTTAACATGAGAATTACTGACTTGGATGGACCTGAAGCAACTTTTCCTCCACTTGATAATATGACAAAACTGAAAACACTAGACCTCAGCTTTAACAAGCTTCCTGGGAAAACTCCTAGCCCGTTTGTTTATAAAGATAATTCGGATTACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

99

Amino Acids

11.18

Weight (kDa)

9.52

Isoelectric Point (pI)

55.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	110
AciI	CCGC	3 cut(s)	35, 94, 140
AcuI	CTGAAG	1 cut(s)	198
AflIII	ACRYGT	1 cut(s)	294
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	3 cut(s)	23, 234, 244
AluI	AGCT	3 cut(s)	23, 234, 244
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	134
BbvCI	CCTCAGC	1 cut(s)	230
BccI	CCATC	2 cut(s)	122, 164
BciT130I	CCWGG	1 cut(s)	249
BfaI	CTAG	3 cut(s)	143, 224, 261
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	112, 133
BmrFI	CCNGG	1 cut(s)	249
Bpu10I	CCTNAGC	2 cut(s)	24, 230
BsaJI	CCNNGG	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	2 cut(s)	114, 175
BseMII	CTCAG	3 cut(s)	38, 95, 244
BshNI	GGYRCC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	1 cut(s)	11
BspACI	CCGC	3 cut(s)	35, 94, 140
BspCNI	CTCAG	3 cut(s)	37, 96, 243
BspLI	GGNNCC	2 cut(s)	112, 133
BspT107I	GGYRCC	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	249
BstDEI	CTNAG	3 cut(s)	24, 104, 230
BstF5I	GGATG	2 cut(s)	114, 175
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	114, 175
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	173
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	2 cut(s)	151, 295
CviJI	RGCY	6 cut(s)	23, 64, 132, 234, 244, 264
CviKI_1	RGCY	6 cut(s)	23, 64, 132, 234, 244, 264
DdeI	CTNAG	3 cut(s)	24, 104, 230
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	134
FaeI	CATG	2 cut(s)	154, 298
FaiI	YATR	4 cut(s)	152, 206, 276, 296
FatI	CATG	2 cut(s)	150, 294
FauI	CCCGC	2 cut(s)	28, 101
Fnu4HI	GCNGC	1 cut(s)	140
FokI	GGATG	2 cut(s)	101, 182
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	140
FspBI	CTAG	3 cut(s)	143, 224, 261
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	154, 298
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	242
HpaI	GTTAAC	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	3 cut(s)	18, 105, 289
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	1 cut(s)	148
HpyF3I	CTNAG	3 cut(s)	24, 104, 230
Hsp92II	CATG	2 cut(s)	154, 298
HspAI	GCGC	1 cut(s)	7
KspAI	GTTAAC	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	6 cut(s)	11, 63, 149, 189, 234, 261
MaeI	CTAG	3 cut(s)	143, 224, 261
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MflI	RGATCY	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	3 cut(s)	81, 156, 283
MnlI	CCTC	5 cut(s)	54, 98, 129, 201, 239
MseI	TTAA	2 cut(s)	147, 237
MspR9I	CCNGG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	249
NdeII	GATC	1 cut(s)	11
NlaIII	CATG	2 cut(s)	154, 298
NlaIV	GGNNCC	2 cut(s)	112, 133
NspI	RCATGY	1 cut(s)	298
PciI	ACATGT	1 cut(s)	294
PkrI	GCNGC	1 cut(s)	141
PscI	ACATGT	1 cut(s)	294
PsiI	TTATAA	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	112, 133
PspPI	GGNCC	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	147, 237
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	1 cut(s)	11
Sau96I	GGNCC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	6 cut(s)	25, 90, 178, 231, 236, 246
SinI	GGWCC	1 cut(s)	173
Sse9I	AATT	3 cut(s)	81, 156, 283
SsiI	CCGC	3 cut(s)	35, 94, 140
SspMI	CTAG	3 cut(s)	143, 224, 261
StyD4I	CCNGG	1 cut(s)	247
TaqI	TCGA	1 cut(s)	121
TasI	AATT	3 cut(s)	81, 156, 283
TauI	GCSGC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	147, 237
Tru9I	TTAA	2 cut(s)	147, 237
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	173
XceI	RCATGY	1 cut(s)	298
XspI	CTAG	3 cut(s)	143, 224, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.