Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

23365971 .. 23375675

Gene Structure 9705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG210600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGAAGCGCAGATCTCTGAAAGCTCAGAATTTGGCAGGAACACTCCCACCAGAGTTGGCGAGGCTTCCCTATCTACAAATAATTGACCTCTCCCGCAACTATCTGAGTGGTACCATCCCTCGAGAATGGGGCTTCCTGCCGCTAATTACCATTTCCCTTGTTGGAAACCGTTTGACAGGTTCCATCCCCATTGAAATCGGAAACATTAGCACCCTGCAAAGTTTGGACATCACTTCCAATAAATTTTCAGGACTGCCTCTGGAGCTTGGGAATTTAACCAGCCTAGACAAAATGCTTCTTTCCTCAAACAATTTTACTGGGAAGTTGCCCGAAACATTTGCAAGGCTTACCACATTAACGGACTCTCGGGTTGATGACAATCACTTTTCTGGGAAGATACCTGATTTCATTCAGAACTGGAAAAATCTTACAAAACTGAGAATTACTGACTTGGATGGACCTGAAGCACCTTTTCCTGCACTTGATAATATGATAAAACTGGAAACACTGATGTTGAGGAATTGCAATCTTACTGGAGAGCTACCTACGCATCTTGCAAAACTTACAGACTTGAAAAGATTAGACCTCAGCTTTAACAAGCTTACTGGGAAAATTCCTAGCCCCTTTGTTAGTAAAGATGACTTGCAATACATATTCTTAACTGGAAACTTGCTGAATGGACCAGTGCCCGAATCGCTGAAAGGAACCAGCATTGATCTGTCATACAACAACATGACCACTAGTGGGACCGACAATTGTGGCCGTGGCGGCATGAACTTGTTTGCAAGCTCGTCAAAAGGAAATAAGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

270

Amino Acids

29.68

Weight (kDa)

9.02

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	166 - 225	2e-07	Leucine rich repeat
LRR_4	PF12799	166 - 202	5.6e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	110
AciI	CCGC	3 cut(s)	94, 140, 768
AcoI	YGGCCR	1 cut(s)	760
AcsI	RAATTY	4 cut(s)	28, 242, 271, 612
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	744
AgsI	TTSAA	2 cut(s)	194, 574
AhlI	ACTAGT	1 cut(s)	740
AluBI	AGCT	6 cut(s)	23, 265, 541, 591, 601, 789
AluI	AGCT	6 cut(s)	23, 265, 541, 591, 601, 789
Ama87I	CYCGRG	2 cut(s)	120, 366
AoxI	GGCC	1 cut(s)	760
ApoI	RAATTY	4 cut(s)	28, 242, 271, 612
Asp718I	GGTACC	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	458, 680, 747
AvaI	CYCGRG	2 cut(s)	120, 366
AvaII	GGWCC	3 cut(s)	458, 680, 747
BaeGI	GKGCMC	1 cut(s)	690
BanI	GGYRCC	1 cut(s)	110
BbvCI	CCTCAGC	1 cut(s)	587
BccI	CCATC	3 cut(s)	122, 191, 449
BceAI	ACGGC	1 cut(s)	747
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BcuI	ACTAGT	1 cut(s)	740
BfaI	CTAG	3 cut(s)	284, 618, 741
BglI	GCCNNNNNGGC	1 cut(s)	768
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	2 cut(s)	140, 769
BlsI	GCNGC	2 cut(s)	141, 770
Bme18I	GGWCC	3 cut(s)	458, 680, 747
BmeT110I	CYCGRG	2 cut(s)	120, 366
BmgT120I	GGNCC	3 cut(s)	458, 680, 747
BmiI	GGNNCC	4 cut(s)	112, 181, 706, 748
BmrI	ACTGGG	2 cut(s)	327, 615
BmsI	GCATC	1 cut(s)	559
BmuI	ACTGGG	2 cut(s)	327, 615
BpmI	CTGGAG	2 cut(s)	281, 555
Bpu10I	CCTNAGC	1 cut(s)	587
BsaBI	GATNNNNATC	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	763
Bsc4I	CCNNNNNNNGG	1 cut(s)	744
Bse1I	ACTGG	7 cut(s)	322, 422, 504, 538, 610, 667, 683
Bse8I	GATNNNNATC	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	763
BseGI	GGATG	3 cut(s)	114, 183, 460
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	744
BseMII	CTCAG	4 cut(s)	38, 95, 428, 601
BseNI	ACTGG	7 cut(s)	322, 422, 504, 538, 610, 667, 683
BseSI	GKGCMC	1 cut(s)	690
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	762
BshNI	GGYRCC	1 cut(s)	110
BsiHKCI	CYCGRG	2 cut(s)	120, 366
BslFI	GGGAC	1 cut(s)	760
BslI	CCNNNNNNNGG	1 cut(s)	744
BsmFI	GGGAC	1 cut(s)	760
BsnI	GGCC	1 cut(s)	762
BsoBI	CYCGRG	2 cut(s)	120, 366
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp143I	GATC	2 cut(s)	11, 715
BspACI	CCGC	3 cut(s)	94, 140, 768
BspANI	GGCC	1 cut(s)	762
BspCNI	CTCAG	4 cut(s)	37, 96, 429, 600
BspLI	GGNNCC	4 cut(s)	112, 181, 706, 748
BspT107I	GGYRCC	1 cut(s)	110
BsrI	ACTGG	7 cut(s)	322, 422, 504, 538, 610, 667, 683
BssECI	CCNNGG	1 cut(s)	763
BssMI	GATC	2 cut(s)	11, 715
Bst4CI	ACNGT	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	787
BstDEI	CTNAG	4 cut(s)	24, 104, 437, 587
BstDSI	CCRYGG	1 cut(s)	763
BstF5I	GGATG	3 cut(s)	114, 183, 460
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	2 cut(s)	14, 718
BstMBI	GATC	2 cut(s)	11, 715
BstMWI	GCNNNNNNNGC	4 cut(s)	262, 547, 694, 768
BstSLI	GKGCMC	1 cut(s)	690
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	762
BtgI	CCRYGG	1 cut(s)	763
BtsCI	GGATG	3 cut(s)	114, 183, 460
BtsIMutI	CAGTG	2 cut(s)	506, 690
Cac8I	GCNNGC	1 cut(s)	787
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	3 cut(s)	458, 680, 747
Csp6I	GTAC	1 cut(s)	111
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	2 cut(s)	733, 772
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	4 cut(s)	24, 104, 437, 587
DpnI	GATC	2 cut(s)	13, 717
DpnII	GATC	2 cut(s)	11, 715
EaeI	YGGCCR	1 cut(s)	760
Eco47I	GGWCC	3 cut(s)	458, 680, 747
Eco57I	CTGAAG	1 cut(s)	483
Eco88I	CYCGRG	2 cut(s)	120, 366
FaeI	CATG	2 cut(s)	736, 775
FaiI	YATR	5 cut(s)	491, 653, 724, 734, 773
FaqI	GGGAC	1 cut(s)	760
FatI	CATG	2 cut(s)	732, 771
FauI	CCCGC	1 cut(s)	101
Fnu4HI	GCNGC	2 cut(s)	140, 769
FokI	GGATG	3 cut(s)	101, 170, 467
Fsp4HI	GCNGC	2 cut(s)	140, 769
FspBI	CTAG	3 cut(s)	284, 618, 741
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	2 cut(s)	140, 769
GsuI	CTGGAG	2 cut(s)	281, 555
HaeIII	GGCC	1 cut(s)	762
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	736, 775
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	2 cut(s)	362, 692
Hpy188I	TCNGA	5 cut(s)	18, 27, 105, 200, 414
Hpy188III	TCNNGA	3 cut(s)	122, 249, 260
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	7 cut(s)	217, 341, 479, 525, 557, 646, 785
HpyF10VI	GCNNNNNNNGC	4 cut(s)	262, 547, 694, 768
HpyF3I	CTNAG	4 cut(s)	24, 104, 437, 587
Hsp92II	CATG	2 cut(s)	736, 775
HspAI	GCGC	1 cut(s)	7
KpnI	GGTACC	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	11, 715
LmnI	GCTCC	1 cut(s)	262
LweI	GCATC	1 cut(s)	559
MaeI	CTAG	3 cut(s)	284, 618, 741
MalI	GATC	2 cut(s)	13, 717
MboI	GATC	2 cut(s)	11, 715
MboII	GAAGA	1 cut(s)	406
MfeI	CAATTG	1 cut(s)	754
MflI	RGATCY	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	690
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	7 cut(s)	54, 98, 129, 267, 313, 510, 596
MseI	TTAA	4 cut(s)	275, 356, 594, 659
MunI	CAATTG	1 cut(s)	754
MwoI	GCNNNNNNNGC	4 cut(s)	262, 547, 694, 768
NdeII	GATC	2 cut(s)	11, 715
NlaIII	CATG	2 cut(s)	736, 775
NlaIV	GGNNCC	4 cut(s)	112, 181, 706, 748
PaeR7I	CTCGAG	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	692
PkrI	GCNGC	2 cut(s)	141, 770
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
PspN4I	GGNNCC	4 cut(s)	112, 181, 706, 748
PspPI	GGNCC	3 cut(s)	458, 680, 747
PsuI	RGATCY	1 cut(s)	11
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
SaqAI	TTAA	4 cut(s)	275, 356, 594, 659
SatI	GCNGC	2 cut(s)	140, 769
Sau3AI	GATC	2 cut(s)	11, 715
Sau96I	GGNCC	3 cut(s)	458, 680, 747
SchI	GAGTC	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	690
SfaNI	GCATC	1 cut(s)	559
Sfr274I	CTCGAG	1 cut(s)	120
SinI	GGWCC	3 cut(s)	458, 680, 747
SlaI	CTCGAG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
SpeI	ACTAGT	1 cut(s)	740
SsiI	CCGC	3 cut(s)	94, 140, 768
SspMI	CTAG	3 cut(s)	284, 618, 741
TaaI	ACNGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	121
TaqII	GACCGA	1 cut(s)	764
TauI	GCSGC	2 cut(s)	142, 771
TfiI	GAWTC	1 cut(s)	692
Tru1I	TTAA	4 cut(s)	275, 356, 594, 659
Tru9I	TTAA	4 cut(s)	275, 356, 594, 659
TscAI	CASTG	2 cut(s)	513, 690
TspDTI	ATGAA	3 cut(s)	17, 397, 788
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	2 cut(s)	513, 690
VpaK11BI	GGWCC	3 cut(s)	458, 680, 747
XapI	RAATTY	4 cut(s)	28, 242, 271, 612
XhoI	CTCGAG	1 cut(s)	120
XspI	CTAG	3 cut(s)	284, 618, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.