Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Forward (+)

45429416 .. 45429870

Gene Structure 455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG365100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAACAACTACATGTTGTTCATCAATCGGCTTCTGGTTCATTCTCTGCTGCTACTTTGCTTTGCAACCTTAGCTTTTGGAGCAAATCGACTATTAGCCGATGAAGTGCAAGCTTTGAAGGACATAGCAAAGACACTGGGTAAGACAGATTGGAATTTCAGTGCTGATCCATGCAGCGGACAATATGGCTGGATTACTCATAAACCGGACAAATATTTTGCGAATAACGTCACTTGCGGCAATTGTACGACTTCCGATGCGGCTAATGCCACCAGTACTGATCAGATCTGCCATGTTGTTAGCATGTACGTTAACGTTACTCTCTCTCTCTCTCTCTCTGAAAAGAATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

117

Amino Acids

12.94

Weight (kDa)

6.79

Isoelectric Point (pI)

15.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	177, 237, 260
AclI	AACGTT	1 cut(s)	315
AclWI	GGATC	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	154
AfaI	GTAC	3 cut(s)	247, 277, 308
AfiI	CCNNNNNNNGG	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	118
AluBI	AGCT	2 cut(s)	74, 113
AluI	AGCT	2 cut(s)	74, 113
AlwI	GGATC	1 cut(s)	161
ApeKI	GCWGC	2 cut(s)	49, 174
ApoI	RAATTY	1 cut(s)	154
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
BbvI	GCAGC	2 cut(s)	36, 186
BclI	TGATCA	1 cut(s)	280
BglII	AGATCT	1 cut(s)	285
BisI	GCNGC	4 cut(s)	50, 175, 238, 261
BlsI	GCNGC	4 cut(s)	51, 176, 239, 262
BmcAI	AGTACT	1 cut(s)	277
BmrI	ACTGGG	1 cut(s)	146
BmsI	GCATC	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	70
BsaWI	WCCGGW	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	141, 273
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseNI	ACTGG	2 cut(s)	141, 273
BseXI	GCAGC	2 cut(s)	36, 186
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	176
Bsp143I	GATC	3 cut(s)	166, 280, 285
BspACI	CCGC	3 cut(s)	177, 237, 260
BspPI	GGATC	1 cut(s)	161
BsrI	ACTGG	2 cut(s)	141, 273
BssMI	GATC	3 cut(s)	166, 280, 285
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	70
BstKTI	GATC	3 cut(s)	169, 283, 288
BstMBI	GATC	3 cut(s)	166, 280, 285
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 80, 266
BstNSI	RCATGY	2 cut(s)	16, 307
BstV1I	GCAGC	2 cut(s)	36, 186
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BtsIMutI	CAGTG	2 cut(s)	134, 166
Cac8I	GCNNGC	1 cut(s)	111
Csp6I	GTAC	3 cut(s)	246, 276, 307
CviAII	CATG	4 cut(s)	13, 171, 293, 304
CviJI	RGCY	6 cut(s)	31, 74, 98, 113, 189, 263
CviKI_1	RGCY	6 cut(s)	31, 74, 98, 113, 189, 263
CviQI	GTAC	3 cut(s)	246, 276, 307
DdeI	CTNAG	1 cut(s)	70
DpnI	GATC	3 cut(s)	168, 282, 287
DpnII	GATC	3 cut(s)	166, 280, 285
FaeI	CATG	4 cut(s)	16, 174, 296, 307
FaiI	YATR	7 cut(s)	14, 125, 172, 186, 201, 294, 305
FatI	CATG	4 cut(s)	12, 170, 292, 303
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	4 cut(s)	50, 175, 238, 261
Fsp4HI	GCNGC	4 cut(s)	50, 175, 238, 261
GluI	GCNGC	4 cut(s)	50, 175, 238, 261
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	4 cut(s)	16, 174, 296, 307
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	1 cut(s)	346
HpaI	GTTAAC	1 cut(s)	313
HpaII	CCGG	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	3 cut(s)	256, 285, 340
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	1 cut(s)	112
HpyCH4IV	ACGT	3 cut(s)	228, 309, 315
HpyCH4V	TGCA	3 cut(s)	65, 109, 174
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 80, 266
HpyF3I	CTNAG	1 cut(s)	70
HpySE526I	ACGT	3 cut(s)	228, 309, 315
Hsp92II	CATG	4 cut(s)	16, 174, 296, 307
Ksp22I	TGATCA	1 cut(s)	280
KspAI	GTTAAC	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	166, 280, 285
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	5 cut(s)	20, 122, 175, 219, 286
Lsp1109I	GCAGC	2 cut(s)	36, 186
LweI	GCATC	1 cut(s)	247
MaeII	ACGT	3 cut(s)	228, 309, 315
MaeIII	GTNAC	2 cut(s)	229, 316
MalI	GATC	3 cut(s)	168, 282, 287
MboI	GATC	3 cut(s)	166, 280, 285
MfeI	CAATTG	1 cut(s)	241
MflI	RGATCY	1 cut(s)	285
MluCI	AATT	2 cut(s)	154, 241
MseI	TTAA	2 cut(s)	312, 352
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	1 cut(s)	206
MunI	CAATTG	1 cut(s)	241
MwoI	GCNNNNNNNGC	3 cut(s)	71, 80, 266
NdeII	GATC	3 cut(s)	166, 280, 285
NlaIII	CATG	4 cut(s)	16, 174, 296, 307
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	2 cut(s)	16, 307
PciI	ACATGT	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	346
PkrI	GCNGC	4 cut(s)	51, 176, 239, 262
PscI	ACATGT	1 cut(s)	12
Psp1406I	AACGTT	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	285
RsaI	GTAC	3 cut(s)	247, 277, 308
RsaNI	GTAC	3 cut(s)	246, 276, 307
SaqAI	TTAA	2 cut(s)	312, 352
SatI	GCNGC	4 cut(s)	50, 175, 238, 261
Sau3AI	GATC	3 cut(s)	166, 280, 285
ScaI	AGTACT	1 cut(s)	277
SetI	ASST	6 cut(s)	71, 76, 115, 231, 312, 318
SfaNI	GCATC	1 cut(s)	247
Sse9I	AATT	2 cut(s)	154, 241
SsiI	CCGC	3 cut(s)	177, 237, 260
SspI	AATATT	1 cut(s)	215
TaiI	ACGT	3 cut(s)	231, 312, 318
TaqI	TCGA	1 cut(s)	88
TasI	AATT	2 cut(s)	154, 241
TatI	WGTACW	1 cut(s)	275
TauI	GCSGC	2 cut(s)	240, 263
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	2 cut(s)	312, 352
Tru9I	TTAA	2 cut(s)	312, 352
TscAI	CASTG	2 cut(s)	141, 166
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	2 cut(s)	49, 174
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	4 cut(s)	10, 17, 29, 117
TspRI	CASTG	2 cut(s)	141, 166
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	2 cut(s)	16, 307
ZrmI	AGTACT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.