Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Forward (+)

70593673 .. 70596157

Gene Structure 2485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGTGAGACCCTTCTTGTATTCGGAGAAGAAGGAAATCGAGCCGGAGCTGAGAATGGTTCAGATCGGAGATGGAAACAGAGAAGAGCAGAGGAGGAGCTTTGAGGCTTTGAGTGAAGAACAAGGCCAATTCATTTCTAGTGTGGTGGAAATCATCAAGGCTCTAAGTGGGTGGGTGTTTGACTTCAACGACAAGGAGGAAAATCTGGAATCTCTGAAAGCTCAGAATTTGGCAGGAACACTCCCACCAGAGTTGGCGAGGCTTCCCTATCTACAAATAATTTCCCTTGTTGGAAACCGTTTGACAGGTTCTATCCCCATTGAAATCGGAAACATTAGCACCCTGCAAAGTTTGGACATCACTTCCAATAAATTTTCAGGACTTCCTCTGGAGCTTGGGAATTTAACCAGCCTAGACAAAATTCGGGTTGATGACAATCACTTTTCTGGGAAGATACCTGATTTCATTGAGAACTGGAAAAATCTTACAAAACTAGTAATTCAGGCTAGTGGTTTGACTGGGCCAATTCCATCCAACATCTCTCTTTTGAAGGAATTAACTGACCTGAGAACTACTGACTTGGATGGACCTGAAGCACCTTTTCCTGCTCTTGATAATATGATAAAACTGGAAACACTGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

214

Amino Acids

23.83

Weight (kDa)

4.66

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	85 - 193	2.7e-10	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	4 cut(s)	226, 371, 400, 420
AcuI	CTGAAG	1 cut(s)	612
AgsI	TTSAA	3 cut(s)	187, 323, 550
AhlI	ACTAGT	1 cut(s)	493
AluBI	AGCT	4 cut(s)	49, 99, 221, 394
AluI	AGCT	4 cut(s)	49, 99, 221, 394
AoxI	GGCC	2 cut(s)	124, 521
ApoI	RAATTY	4 cut(s)	226, 371, 400, 420
AspS9I	GGNCC	2 cut(s)	521, 587
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	587
BccI	CCATC	3 cut(s)	65, 538, 578
BcuI	ACTAGT	1 cut(s)	493
BfaI	CTAG	4 cut(s)	138, 413, 494, 507
Bme18I	GGWCC	1 cut(s)	587
BmgT120I	GGNCC	2 cut(s)	521, 587
BmrI	ACTGGG	1 cut(s)	528
BmuI	ACTGGG	1 cut(s)	528
BpmI	CTGGAG	1 cut(s)	410
BsaBI	GATNNNNATC	1 cut(s)	435
Bse1I	ACTGG	3 cut(s)	479, 523, 633
Bse8I	GATNNNNATC	1 cut(s)	435
BseGI	GGATG	2 cut(s)	530, 589
BseJI	GATNNNNATC	1 cut(s)	435
BseMII	CTCAG	4 cut(s)	41, 236, 557, 629
BseNI	ACTGG	3 cut(s)	479, 523, 633
BseRI	GAGGAG	2 cut(s)	106, 109
BshFI	GGCC	2 cut(s)	126, 523
BsiSI	CCGG	1 cut(s)	44
BsnI	GGCC	2 cut(s)	126, 523
Bsp143I	GATC	1 cut(s)	63
BspANI	GGCC	2 cut(s)	126, 523
BspCNI	CTCAG	4 cut(s)	42, 235, 558, 630
BspQI	GCTCTTC	1 cut(s)	78
BsrI	ACTGG	3 cut(s)	479, 523, 633
BssMI	GATC	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	78
BstDEI	CTNAG	5 cut(s)	50, 164, 222, 566, 638
BstF5I	GGATG	2 cut(s)	530, 589
BstKTI	GATC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	126, 523
BtsCI	GGATG	2 cut(s)	530, 589
BtsIMutI	CAGTG	1 cut(s)	635
Cfr13I	GGNCC	2 cut(s)	521, 587
CspCI	CAANNNNNGTGG	2 cut(s)	234, 269
DdeI	CTNAG	5 cut(s)	50, 164, 222, 566, 638
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	587
Eco57I	CTGAAG	1 cut(s)	612
FaiI	YATR	1 cut(s)	620
FokI	GGATG	2 cut(s)	517, 596
FspBI	CTAG	4 cut(s)	138, 413, 494, 507
GsuI	CTGGAG	1 cut(s)	410
HaeIII	GGCC	2 cut(s)	126, 523
HapII	CCGG	1 cut(s)	44
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	6 cut(s)	25, 63, 68, 216, 225, 329
Hpy188III	TCNNGA	4 cut(s)	206, 378, 389, 611
HpyAV	CCTTC	3 cut(s)	22, 25, 544
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	1 cut(s)	346
HpyF3I	CTNAG	5 cut(s)	50, 164, 222, 566, 638
Kzo9I	GATC	1 cut(s)	63
LguI	GCTCTTC	1 cut(s)	78
LmnI	GCTCC	3 cut(s)	46, 96, 391
MaeI	CTAG	4 cut(s)	138, 413, 494, 507
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	4 cut(s)	40, 95, 128, 463
MluCI	AATT	9 cut(s)	128, 226, 279, 371, 400, 420, 498, 525, 554
MmeI	TCCRAC	2 cut(s)	271, 558
MnlI	CCTC	6 cut(s)	84, 87, 97, 190, 252, 396
MseI	TTAA	3 cut(s)	404, 557, 643
MspI	CCGG	1 cut(s)	44
NdeII	GATC	1 cut(s)	63
PciSI	GCTCTTC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	209
PspPI	GGNCC	2 cut(s)	521, 587
SapI	GCTCTTC	1 cut(s)	78
SaqAI	TTAA	3 cut(s)	404, 557, 643
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	2 cut(s)	521, 587
SetI	ASST	9 cut(s)	51, 101, 223, 310, 396, 460, 567, 592, 601
SinI	GGWCC	1 cut(s)	587
SpeI	ACTAGT	1 cut(s)	493
Sse9I	AATT	9 cut(s)	128, 226, 279, 371, 400, 420, 498, 525, 554
SspMI	CTAG	4 cut(s)	138, 413, 494, 507
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	1 cut(s)	39
TasI	AATT	9 cut(s)	128, 226, 279, 371, 400, 420, 498, 525, 554
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	3 cut(s)	404, 557, 643
Tru9I	TTAA	3 cut(s)	404, 557, 643
TscAI	CASTG	1 cut(s)	642
TspDTI	ATGAA	2 cut(s)	121, 454
TspRI	CASTG	1 cut(s)	642
VpaK11BI	GGWCC	1 cut(s)	587
XapI	RAATTY	4 cut(s)	226, 371, 400, 420
XspI	CTAG	4 cut(s)	138, 413, 494, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.