Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

23793289 .. 23830468

Gene Structure 37180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG207200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAACAACTACATGCTGTTGATCAATCGGCTTCTGGTTCATTTTCTACTGCTATTTTGCTTTGCAACCTTGGCTTTCGCAGCTAATCGATTAATAGCCGATGAAGTACAAGCTTTGAAGGACATAGCAAAGACACTGGGGAAGACAGACTGGAATTTTAGTGCTGATCCATGTAGCGGAGAATATGGATGGATTACTGATCAAGCCGACAAATATTTTGCGAATAACGTCACCTGCGGCAATTGTACCATTTCCGATGAGGCCAATGCCACCAGTACTGATCAGATATGCCATGTTGTTAGCATGTATGTCTCTCTGTCTCTCACGCGAAAAATTTTATTCACGCACAAAAATACACTACAAGCTTTAACGGACATCGGAAGGACACTCGGTAAGAACTGGAACTTCAGCGTAGATCCATGCAGCGGAGAACTTGGATGGAGTACTGCTCCGGATGGCCAATACATGAATAACGTCACCTGCGGCAACTGGGACTGCTCCTTTCGATGGTGTGTTACGCAGCTGGCCTTTTGTGGTGGTATGAGCGGTGGTGTTTCATTGGAGCCGGTTGGGCCAATTGGGCCTCGTTTGGGGTGTGCTAGGGCTTTGGAGTTGGTTGGGCTATTAAACCACCTTGGGCCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

215

Amino Acids

23.5

Weight (kDa)

5.75

Isoelectric Point (pI)

18.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	242, 488
Acc36I	ACCTGC	2 cut(s)	242, 488
AccBSI	CCGCTC	1 cut(s)	546
AccII	CGCG	1 cut(s)	328
AccIII	TCCGGA	1 cut(s)	451
AciI	CCGC	5 cut(s)	177, 237, 426, 483, 546
AclWI	GGATC	2 cut(s)	161, 410
AcoI	YGGCCR	1 cut(s)	457
AcsI	RAATTY	2 cut(s)	154, 333
AcuI	CTGAAG	1 cut(s)	391
AfaI	GTAC	4 cut(s)	108, 247, 277, 445
AfiI	CCNNNNNNNGG	4 cut(s)	176, 425, 507, 590
AgsI	TTSAA	1 cut(s)	118
AluBI	AGCT	4 cut(s)	83, 113, 365, 523
AluI	AGCT	4 cut(s)	83, 113, 365, 523
Alw26I	GTCTC	2 cut(s)	316, 324
AlwI	GGATC	2 cut(s)	161, 410
Aor13HI	TCCGGA	1 cut(s)	451
AoxI	GGCC	6 cut(s)	261, 457, 525, 572, 581, 638
ApaI	GGGCCC	1 cut(s)	642
ApeKI	GCWGC	3 cut(s)	80, 423, 520
ApoI	RAATTY	2 cut(s)	154, 333
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AseI	ATTAAT	1 cut(s)	92
AspS9I	GGNCC	4 cut(s)	572, 581, 638, 639
AsuHPI	GGTGA	2 cut(s)	223, 469
BaeGI	GKGCMC	1 cut(s)	642
BalI	TGGCCA	1 cut(s)	459
BanII	GRGCYC	1 cut(s)	642
BbsI	GAAGAC	1 cut(s)	149
BbvI	GCAGC	3 cut(s)	92, 435, 532
BccI	CCATC	4 cut(s)	183, 432, 449, 501
BclI	TGATCA	3 cut(s)	21, 199, 280
BcoDI	GTCTC	2 cut(s)	316, 324
BfaI	CTAG	1 cut(s)	600
BfuAI	ACCTGC	2 cut(s)	242, 488
BglI	GCCNNNNNGGC	2 cut(s)	571, 580
BisI	GCNGC	5 cut(s)	81, 238, 424, 484, 521
BlsI	GCNGC	5 cut(s)	82, 239, 425, 485, 522
BmcAI	AGTACT	2 cut(s)	277, 445
BmgT120I	GGNCC	4 cut(s)	572, 581, 638, 639
BmiI	GGNNCC	2 cut(s)	564, 640
BmrI	ACTGGG	2 cut(s)	146, 499
BmuI	ACTGGG	2 cut(s)	146, 499
BpiI	GAAGAC	1 cut(s)	149
BplI	GAGNNNNNCTC	2 cut(s)	433, 465
Bsa29I	ATCGAT	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	69, 634
BsaWI	WCCGGW	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	4 cut(s)	176, 425, 507, 590
Bse118I	RCCGGY	1 cut(s)	565
Bse1I	ACTGG	5 cut(s)	141, 155, 273, 404, 494
BseAI	TCCGGA	1 cut(s)	451
BseCI	ATCGAT	1 cut(s)	88
BseDI	CCNNGG	2 cut(s)	69, 634
BseGI	GGATG	3 cut(s)	194, 443, 460
BseLI	CCNNNNNNNGG	4 cut(s)	176, 425, 507, 590
BseNI	ACTGG	5 cut(s)	141, 155, 273, 404, 494
BseSI	GKGCMC	1 cut(s)	642
BseXI	GCAGC	3 cut(s)	92, 435, 532
Bsh1236I	CGCG	1 cut(s)	328
BshFI	GGCC	6 cut(s)	263, 459, 527, 574, 583, 640
BshVI	ATCGAT	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	452, 566
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	4 cut(s)	176, 425, 507, 590
BsmAI	GTCTC	2 cut(s)	316, 324
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	6 cut(s)	263, 459, 527, 574, 583, 640
Bsp120I	GGGCCC	1 cut(s)	638
Bsp1286I	GDGCHC	1 cut(s)	642
Bsp13I	TCCGGA	1 cut(s)	451
Bsp143I	GATC	5 cut(s)	21, 166, 199, 280, 415
BspACI	CCGC	5 cut(s)	177, 237, 426, 483, 546
BspANI	GGCC	6 cut(s)	263, 459, 527, 574, 583, 640
BspDI	ATCGAT	1 cut(s)	88
BspEI	TCCGGA	1 cut(s)	451
BspFNI	CGCG	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	564, 640
BspMI	ACCTGC	2 cut(s)	242, 488
BspPI	GGATC	2 cut(s)	161, 410
BsrBI	CCGCTC	1 cut(s)	546
BsrFI	RCCGGY	1 cut(s)	565
BsrI	ACTGG	5 cut(s)	141, 155, 273, 404, 494
BssAI	RCCGGY	1 cut(s)	565
BssECI	CCNNGG	2 cut(s)	69, 634
BssMI	GATC	5 cut(s)	21, 166, 199, 280, 415
BssT1I	CCWWGG	2 cut(s)	69, 634
BstC8I	GCNNGC	1 cut(s)	525
BstF5I	GGATG	3 cut(s)	194, 443, 460
BstFNI	CGCG	1 cut(s)	328
BstKTI	GATC	5 cut(s)	24, 169, 202, 283, 418
BstMAI	GTCTC	2 cut(s)	316, 324
BstMBI	GATC	5 cut(s)	21, 166, 199, 280, 415
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 80, 571, 580
BstNSI	RCATGY	2 cut(s)	16, 307
BstSLI	GKGCMC	1 cut(s)	642
BstUI	CGCG	1 cut(s)	328
BstV1I	GCAGC	3 cut(s)	92, 435, 532
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
Bsu15I	ATCGAT	1 cut(s)	88
BsuRI	GGCC	6 cut(s)	263, 459, 527, 574, 583, 640
BsuTUI	ATCGAT	1 cut(s)	88
BtsCI	GGATG	3 cut(s)	194, 443, 460
BtsIMutI	CAGTG	1 cut(s)	134
BveI	ACCTGC	2 cut(s)	242, 488
Cac8I	GCNNGC	1 cut(s)	525
Cfr10I	RCCGGY	1 cut(s)	565
Cfr13I	GGNCC	4 cut(s)	572, 581, 638, 639
ClaI	ATCGAT	1 cut(s)	88
Csp6I	GTAC	4 cut(s)	107, 246, 276, 444
CviAII	CATG	6 cut(s)	13, 171, 293, 304, 420, 466
CviQI	GTAC	4 cut(s)	107, 246, 276, 444
DpnI	GATC	5 cut(s)	23, 168, 201, 282, 417
DpnII	GATC	5 cut(s)	21, 166, 199, 280, 415
EaeI	YGGCCR	1 cut(s)	457
Eco130I	CCWWGG	2 cut(s)	69, 634
Eco24I	GRGCYC	1 cut(s)	642
Eco57I	CTGAAG	1 cut(s)	391
EcoT14I	CCWWGG	2 cut(s)	69, 634
EcoT38I	GRGCYC	1 cut(s)	642
ErhI	CCWWGG	2 cut(s)	69, 634
FaeI	CATG	6 cut(s)	16, 174, 296, 307, 423, 469
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	6 cut(s)	12, 170, 292, 303, 419, 465
FbaI	TGATCA	3 cut(s)	21, 199, 280
Fnu4HI	GCNGC	5 cut(s)	81, 238, 424, 484, 521
FokI	GGATG	3 cut(s)	201, 450, 467
FriOI	GRGCYC	1 cut(s)	642
Fsp4HI	GCNGC	5 cut(s)	81, 238, 424, 484, 521
FspBI	CTAG	1 cut(s)	600
GluI	GCNGC	5 cut(s)	81, 238, 424, 484, 521
HaeIII	GGCC	6 cut(s)	263, 459, 527, 574, 583, 640
HapII	CCGG	2 cut(s)	452, 566
Hin1II	CATG	6 cut(s)	16, 174, 296, 307, 423, 469
HindIII	AAGCTT	2 cut(s)	111, 363
HpaII	CCGG	2 cut(s)	452, 566
HphI	GGTGA	2 cut(s)	223, 469
Hpy188I	TCNGA	3 cut(s)	256, 285, 380
Hpy188III	TCNNGA	1 cut(s)	452
HpyAV	CCTTC	2 cut(s)	112, 375
HpyCH4IV	ACGT	2 cut(s)	228, 474
HpyCH4V	TGCA	2 cut(s)	65, 423
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 80, 571, 580
HpySE526I	ACGT	2 cut(s)	228, 474
Hsp92II	CATG	6 cut(s)	16, 174, 296, 307, 423, 469
Kpn2I	TCCGGA	1 cut(s)	451
Ksp22I	TGATCA	3 cut(s)	21, 199, 280
Kzo9I	GATC	5 cut(s)	21, 166, 199, 280, 415
LmnI	GCTCC	3 cut(s)	454, 503, 562
Lsp1109I	GCAGC	3 cut(s)	92, 435, 532
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	2 cut(s)	228, 474
MaeIII	GTNAC	3 cut(s)	229, 475, 514
MalI	GATC	5 cut(s)	23, 168, 201, 282, 417
MbiI	CCGCTC	1 cut(s)	546
MboI	GATC	5 cut(s)	21, 166, 199, 280, 415
MboII	GAAGA	1 cut(s)	154
MfeI	CAATTG	2 cut(s)	241, 576
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	1 cut(s)	642
MlsI	TGGCCA	1 cut(s)	459
MluCI	AATT	4 cut(s)	154, 241, 333, 576
MluNI	TGGCCA	1 cut(s)	459
MnlI	CCTC	2 cut(s)	253, 594
Mox20I	TGGCCA	1 cut(s)	459
MroI	TCCGGA	1 cut(s)	451
MscI	TGGCCA	1 cut(s)	459
MseI	TTAA	3 cut(s)	92, 368, 626
Msp20I	TGGCCA	1 cut(s)	459
MspA1I	CMGCKG	2 cut(s)	426, 523
MspI	CCGG	2 cut(s)	452, 566
MunI	CAATTG	2 cut(s)	241, 576
MvnI	CGCG	1 cut(s)	328
MwoI	GCNNNNNNNGC	4 cut(s)	71, 80, 571, 580
NdeII	GATC	5 cut(s)	21, 166, 199, 280, 415
NlaIII	CATG	6 cut(s)	16, 174, 296, 307, 423, 469
NlaIV	GGNNCC	2 cut(s)	564, 640
NmuCI	GTSAC	2 cut(s)	229, 475
NspI	RCATGY	2 cut(s)	16, 307
PaqCI	CACCTGC	2 cut(s)	242, 488
PkrI	GCNGC	5 cut(s)	82, 239, 425, 485, 522
PshBI	ATTAAT	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	564, 640
PspOMI	GGGCCC	1 cut(s)	638
PspPI	GGNCC	4 cut(s)	572, 581, 638, 639
PsuI	RGATCY	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	523
RsaI	GTAC	4 cut(s)	108, 247, 277, 445
RsaNI	GTAC	4 cut(s)	107, 246, 276, 444
SaqAI	TTAA	3 cut(s)	92, 368, 626
SatI	GCNGC	5 cut(s)	81, 238, 424, 484, 521
Sau3AI	GATC	5 cut(s)	21, 166, 199, 280, 415
Sau96I	GGNCC	4 cut(s)	572, 581, 638, 639
ScaI	AGTACT	2 cut(s)	277, 445
SduI	GDGCHC	1 cut(s)	642
SfiI	GGCCNNNNNGGCC	1 cut(s)	580
Sse9I	AATT	4 cut(s)	154, 241, 333, 576
SsiI	CCGC	5 cut(s)	177, 237, 426, 483, 546
SspI	AATATT	1 cut(s)	215
SspMI	CTAG	1 cut(s)	600
StyI	CCWWGG	2 cut(s)	69, 634
TaiI	ACGT	2 cut(s)	231, 477
TaqI	TCGA	2 cut(s)	88, 505
TasI	AATT	4 cut(s)	154, 241, 333, 576
TatI	WGTACW	3 cut(s)	106, 275, 443
TauI	GCSGC	2 cut(s)	240, 486
Tru1I	TTAA	3 cut(s)	92, 368, 626
Tru9I	TTAA	3 cut(s)	92, 368, 626
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	2 cut(s)	229, 475
TseI	GCWGC	3 cut(s)	80, 423, 520
Tsp45I	GTSAC	2 cut(s)	229, 475
TspDTI	ATGAA	5 cut(s)	17, 29, 117, 482, 546
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	1 cut(s)	141
VspI	ATTAAT	1 cut(s)	92
XapI	RAATTY	2 cut(s)	154, 333
XceI	RCATGY	2 cut(s)	16, 307
XspI	CTAG	1 cut(s)	600
ZrmI	AGTACT	2 cut(s)	277, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.