Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

23326663 .. 23338607

Gene Structure 11945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG210400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAAGCGCAGATCTCTGAAAGCTCAGGATTTGGTAGGAACACTCCCACCAGAGTTGGCGAGGCTCCCCTATCTACAAATGATTGACCTCTCCCGCAACTATCTGAGTGGTACCATCCCTCGAGAATGGGGCTCCCTGCCACTGGTTAACATTTCCCTTGCGGGAAACCGTTTAACAGGTTCTATCCCCATTGAGCTCGGAAACATTAGCACCCTGCAAAGTTTGGACATCACTTCCAATTATTTTACAGGACTTCCTCTGGAGCTTGGGAATTTAACCAGCATAGACAAAATGTTTCTTGCCTCGAACAATTTTACTGGGAAGTTGCCCGAAACATTTGCAAGGCTTACCACATTAACGGACTTGAGAATTACTGACTTGGATGGACCTGAAGCACCTTTTCCTCCACTTGATAATATGACAAAACTGAAAGCACTGATGTTGAGGAATTGCAATCTGACTGGAGAGCTACCTACGTATCTTGCGAAACTGACAGAGTTGGACAAATTAGACCTCAGCTTTAACAAGCTTACTGGGAAAATTCCTATCCCCATTGTTTATAAAGATAATTCGGAGTACATATTCTTAACTGGAAACTTGCTGAATGGACCAGTGCCCGAATCGCTGAAAGGAAGCAGCATTGATCTTTCATACAACAACATGACCATTAGTGGGACCGACAATTGTGTTGGCCGTGGCGGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

235

Amino Acids

25.77

Weight (kDa)

5.59

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	65 - 177	5.9e-10	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	561
Acc65I	GGTACC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	110
AciI	CCGC	3 cut(s)	94, 161, 699
AcoI	YGGCCR	1 cut(s)	691
AcsI	RAATTY	2 cut(s)	271, 540
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	2 cut(s)	112, 578
AfiI	CCNNNNNNNGG	2 cut(s)	142, 672
AluBI	AGCT	6 cut(s)	23, 196, 265, 469, 519, 529
AluI	AGCT	6 cut(s)	23, 196, 265, 469, 519, 529
Alw21I	GWGCWC	1 cut(s)	198
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	1 cut(s)	691
ApeKI	GCWGC	1 cut(s)	636
ApoI	RAATTY	2 cut(s)	271, 540
Asp718I	GGTACC	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	386, 608, 675
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	3 cut(s)	386, 608, 675
BaeGI	GKGCMC	1 cut(s)	618
BaeI	ACNNNNGTAYC	2 cut(s)	461, 494
BanI	GGYRCC	1 cut(s)	110
BanII	GRGCYC	2 cut(s)	134, 198
Bbv12I	GWGCWC	1 cut(s)	198
BbvCI	CCTCAGC	1 cut(s)	515
BbvI	GCAGC	1 cut(s)	648
BccI	CCATC	2 cut(s)	122, 377
BceAI	ACGGC	1 cut(s)	678
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BglI	GCCNNNNNGGC	1 cut(s)	699
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	2 cut(s)	637, 700
BlsI	GCNGC	2 cut(s)	638, 701
Bme18I	GGWCC	3 cut(s)	386, 608, 675
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	3 cut(s)	386, 608, 675
BmiI	GGNNCC	4 cut(s)	65, 112, 133, 676
BmrI	ACTGGG	2 cut(s)	327, 543
BmuI	ACTGGG	2 cut(s)	327, 543
BpmI	CTGGAG	2 cut(s)	281, 483
Bpu10I	CCTNAGC	2 cut(s)	24, 515
BpuEI	CTTGAG	1 cut(s)	385
BsaAI	YACGTR	1 cut(s)	477
BsaJI	CCNNGG	1 cut(s)	694
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 672
Bse1I	ACTGG	6 cut(s)	147, 322, 466, 538, 595, 611
BseDI	CCNNGG	1 cut(s)	694
BseGI	GGATG	2 cut(s)	114, 388
BseLI	CCNNNNNNNGG	2 cut(s)	142, 672
BseMII	CTCAG	3 cut(s)	38, 95, 529
BseNI	ACTGG	6 cut(s)	147, 322, 466, 538, 595, 611
BseSI	GKGCMC	1 cut(s)	618
BseXI	GCAGC	1 cut(s)	648
BshFI	GGCC	1 cut(s)	693
BshNI	GGYRCC	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	688
BslI	CCNNNNNNNGG	2 cut(s)	142, 672
BsmFI	GGGAC	1 cut(s)	688
BsnI	GGCC	1 cut(s)	693
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	3 cut(s)	134, 198, 618
Bsp143I	GATC	2 cut(s)	11, 643
BspACI	CCGC	3 cut(s)	94, 161, 699
BspANI	GGCC	1 cut(s)	693
BspCNI	CTCAG	3 cut(s)	37, 96, 528
BspLI	GGNNCC	4 cut(s)	65, 112, 133, 676
BspT107I	GGYRCC	1 cut(s)	110
BsrI	ACTGG	6 cut(s)	147, 322, 466, 538, 595, 611
BssECI	CCNNGG	1 cut(s)	694
BssMI	GATC	2 cut(s)	11, 643
Bst4CI	ACNGT	1 cut(s)	170
BstBAI	YACGTR	1 cut(s)	477
BstDEI	CTNAG	3 cut(s)	24, 104, 515
BstDSI	CCRYGG	1 cut(s)	694
BstF5I	GGATG	2 cut(s)	114, 388
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	2 cut(s)	14, 646
BstMBI	GATC	2 cut(s)	11, 643
BstMWI	GCNNNNNNNGC	2 cut(s)	622, 699
BstNSI	RCATGY	1 cut(s)	706
BstSLI	GKGCMC	1 cut(s)	618
BstSNI	TACGTA	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	648
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	693
BtgI	CCRYGG	1 cut(s)	694
BtsCI	GGATG	2 cut(s)	114, 388
BtsIMutI	CAGTG	3 cut(s)	140, 434, 618
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	3 cut(s)	386, 608, 675
Csp6I	GTAC	2 cut(s)	111, 577
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	2 cut(s)	661, 703
CviQI	GTAC	2 cut(s)	111, 577
DdeI	CTNAG	3 cut(s)	24, 104, 515
DpnI	GATC	2 cut(s)	13, 645
DpnII	GATC	2 cut(s)	11, 643
EaeI	YGGCCR	1 cut(s)	691
Ecl136II	GAGCTC	1 cut(s)	196
Eco105I	TACGTA	1 cut(s)	477
Eco24I	GRGCYC	2 cut(s)	134, 198
Eco47I	GGWCC	3 cut(s)	386, 608, 675
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	196
EcoT38I	GRGCYC	2 cut(s)	134, 198
FaeI	CATG	2 cut(s)	664, 706
FaiI	YATR	7 cut(s)	284, 419, 561, 581, 652, 662, 704
FaqI	GGGAC	1 cut(s)	688
FatI	CATG	2 cut(s)	660, 702
FauI	CCCGC	2 cut(s)	101, 154
Fnu4HI	GCNGC	2 cut(s)	637, 700
FokI	GGATG	2 cut(s)	101, 395
FriOI	GRGCYC	2 cut(s)	134, 198
Fsp4HI	GCNGC	2 cut(s)	637, 700
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	2 cut(s)	637, 700
GsuI	CTGGAG	2 cut(s)	281, 483
HaeIII	GGCC	1 cut(s)	693
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	664, 706
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	1 cut(s)	620
HpaI	GTTAAC	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	5 cut(s)	18, 105, 200, 459, 574
Hpy188III	TCNNGA	3 cut(s)	26, 122, 260
Hpy8I	GTNNAC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	476
HpyCH4V	TGCA	3 cut(s)	217, 341, 453
HpyF10VI	GCNNNNNNNGC	2 cut(s)	622, 699
HpyF3I	CTNAG	3 cut(s)	24, 104, 515
HpySE526I	ACGT	1 cut(s)	476
Hsp92II	CATG	2 cut(s)	664, 706
HspAI	GCGC	1 cut(s)	7
KpnI	GGTACC	1 cut(s)	114
KspAI	GTTAAC	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	11, 643
LmnI	GCTCC	3 cut(s)	69, 137, 262
Lsp1109I	GCAGC	1 cut(s)	648
MaeII	ACGT	1 cut(s)	476
MalI	GATC	2 cut(s)	13, 645
MboI	GATC	2 cut(s)	11, 643
MfeI	CAATTG	1 cut(s)	682
MflI	RGATCY	1 cut(s)	11
MhlI	GDGCHC	3 cut(s)	134, 198, 618
MluCI	AATT	9 cut(s)	238, 271, 310, 369, 448, 506, 540, 568, 682
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	8 cut(s)	54, 98, 129, 267, 313, 414, 438, 524
MseI	TTAA	6 cut(s)	147, 173, 275, 356, 522, 587
MunI	CAATTG	1 cut(s)	682
MwoI	GCNNNNNNNGC	2 cut(s)	622, 699
NdeII	GATC	2 cut(s)	11, 643
NlaIII	CATG	2 cut(s)	664, 706
NlaIV	GGNNCC	4 cut(s)	65, 112, 133, 676
NspI	RCATGY	1 cut(s)	706
PaeR7I	CTCGAG	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	620
PkrI	GCNGC	2 cut(s)	638, 701
Ppu21I	YACGTR	1 cut(s)	477
PsiI	TTATAA	1 cut(s)	561
Psp124BI	GAGCTC	1 cut(s)	198
PspN4I	GGNNCC	4 cut(s)	65, 112, 133, 676
PspPI	GGNCC	3 cut(s)	386, 608, 675
PsuI	RGATCY	1 cut(s)	11
RsaI	GTAC	2 cut(s)	112, 578
RsaNI	GTAC	2 cut(s)	111, 577
SacI	GAGCTC	1 cut(s)	198
SaqAI	TTAA	6 cut(s)	147, 173, 275, 356, 522, 587
SatI	GCNGC	2 cut(s)	637, 700
Sau3AI	GATC	2 cut(s)	11, 643
Sau96I	GGNCC	3 cut(s)	386, 608, 675
SduI	GDGCHC	3 cut(s)	134, 198, 618
Sfr274I	CTCGAG	1 cut(s)	120
SinI	GGWCC	3 cut(s)	386, 608, 675
SlaI	CTCGAG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	120, 364
SmoI	CTYRAG	2 cut(s)	120, 364
SnaBI	TACGTA	1 cut(s)	477
Sse9I	AATT	9 cut(s)	238, 271, 310, 369, 448, 506, 540, 568, 682
SsiI	CCGC	3 cut(s)	94, 161, 699
SstI	GAGCTC	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	170
TaiI	ACGT	1 cut(s)	479
TaqI	TCGA	2 cut(s)	121, 305
TaqII	GACCGA	1 cut(s)	692
TasI	AATT	9 cut(s)	238, 271, 310, 369, 448, 506, 540, 568, 682
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	1 cut(s)	702
TfiI	GAWTC	1 cut(s)	620
Tru1I	TTAA	6 cut(s)	147, 173, 275, 356, 522, 587
Tru9I	TTAA	6 cut(s)	147, 173, 275, 356, 522, 587
TscAI	CASTG	3 cut(s)	147, 441, 618
TseI	GCWGC	1 cut(s)	636
TspDTI	ATGAA	2 cut(s)	17, 639
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	3 cut(s)	147, 441, 618
VpaK11BI	GGWCC	3 cut(s)	386, 608, 675
XapI	RAATTY	2 cut(s)	271, 540
XceI	RCATGY	1 cut(s)	706
XhoI	CTCGAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.