Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Forward (+)

70565996 .. 70566979

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAATTACACATTCTTCTTCCCAAGGCTTTTTGTTCATTCTATCTTGCTGGTTATCTATGCAAGCTTCGCTTTCGGAGCTACTCAATTATCAGAAGATGAAGTACAAGCTTTAAAGATCATTGGAAAGACATTGGGGAAGGACCGGAATTTCACTGCAGATCCTTGTAGCAGCAAAGCATCTAGATGGATTGATACTACCTCAACAGACAGCGCAGATACAAATAACGTCACCTGCGGCAATTGTAATACTGCTGGCGATGATCAGATCTGCCATGTTACAAGCATGTATGTAAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATGTGTACCTATGTCCGTACAGTTACTGTTGAACACTGGAAGCCTAAGAGCCTAAGACTCATGCTTGATCGTGTTCGATTATTCGGGAGGGTCCTGTTGCCATTAGTTCATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

153

Amino Acids

17.1

Weight (kDa)

8.57

Isoelectric Point (pI)

23.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	242
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	148
AfaI	GTAC	3 cut(s)	105, 352, 364
AgsI	TTSAA	1 cut(s)	377
AluBI	AGCT	3 cut(s)	66, 80, 110
AluI	AGCT	3 cut(s)	66, 80, 110
AlwI	GGATC	1 cut(s)	155
AlwNI	CAGNNNCTG	1 cut(s)	371
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	2 cut(s)	142, 436
AsuHPI	GGTGA	1 cut(s)	223
AvaII	GGWCC	2 cut(s)	142, 436
BarI	GAAGNNNNNNTAC	2 cut(s)	87, 119
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	1 cut(s)	180
BclI	TGATCA	1 cut(s)	262
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	156
BfuAI	ACCTGC	1 cut(s)	242
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	2 cut(s)	172, 238
BlsI	GCNGC	2 cut(s)	173, 239
Bme18I	GGWCC	2 cut(s)	142, 436
BmgT120I	GGNCC	2 cut(s)	142, 436
BmiI	GGNNCC	1 cut(s)	437
BmsI	GCATC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	23
BsaWI	WCCGGW	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	386
BseDI	CCNNGG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	386
BseXI	GCAGC	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	145
Bsp143I	GATC	5 cut(s)	117, 160, 262, 267, 412
BspACI	CCGC	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	437
BspMAI	CTGCAG	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	242
BspPI	GGATC	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	5 cut(s)	117, 160, 262, 267, 412
BssT1I	CCWWGG	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	367, 373
BstC8I	GCNNGC	2 cut(s)	64, 256
BstDEI	CTNAG	2 cut(s)	390, 398
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	5 cut(s)	120, 163, 265, 270, 415
BstMBI	GATC	5 cut(s)	117, 160, 262, 267, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 77
BstNSI	RCATGY	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	183
BstX2I	RGATCY	2 cut(s)	160, 267
BstYI	RGATCY	2 cut(s)	160, 267
BtgZI	GCGATG	1 cut(s)	273
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	153, 379
BveI	ACCTGC	1 cut(s)	242
Cac8I	GCNNGC	2 cut(s)	64, 256
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	1 cut(s)	215
Cfr13I	GGNCC	2 cut(s)	142, 436
Csp6I	GTAC	3 cut(s)	104, 351, 363
CviAII	CATG	3 cut(s)	275, 286, 406
CviJI	RGCY	6 cut(s)	28, 66, 80, 110, 388, 396
CviKI_1	RGCY	6 cut(s)	28, 66, 80, 110, 388, 396
CviQI	GTAC	3 cut(s)	104, 351, 363
DdeI	CTNAG	2 cut(s)	390, 398
DpnI	GATC	5 cut(s)	119, 162, 264, 269, 414
DpnII	GATC	5 cut(s)	117, 160, 262, 267, 412
DraI	TTTAAA	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	23
Eco47I	GGWCC	2 cut(s)	142, 436
EcoO109I	RGGNCCY	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	3 cut(s)	278, 289, 409
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FatI	CATG	3 cut(s)	274, 285, 405
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	2 cut(s)	172, 238
Fsp4HI	GCNGC	2 cut(s)	172, 238
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	2 cut(s)	172, 238
HapII	CCGG	1 cut(s)	145
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	278, 289, 409
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HindIII	AAGCTT	2 cut(s)	64, 108
HinfI	GANTC	1 cut(s)	402
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	3 cut(s)	77, 94, 267
Hpy188III	TCNNGA	2 cut(s)	183, 430
Hpy8I	GTNNAC	1 cut(s)	351
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	2 cut(s)	367, 373
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	62, 158
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 77
HpyF3I	CTNAG	2 cut(s)	390, 398
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	278, 289, 409
HspAI	GCGC	1 cut(s)	213
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	5 cut(s)	117, 160, 262, 267, 412
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	6 cut(s)	35, 158, 240, 247, 367, 452
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	3 cut(s)	229, 277, 367
MalI	GATC	5 cut(s)	119, 162, 264, 269, 414
MboI	GATC	5 cut(s)	117, 160, 262, 267, 412
MboII	GAAGA	3 cut(s)	7, 10, 107
MfeI	CAATTG	1 cut(s)	241
MflI	RGATCY	2 cut(s)	160, 267
MluCI	AATT	4 cut(s)	4, 86, 148, 241
MlyI	GAGTC	1 cut(s)	396
MnlI	CCTC	2 cut(s)	211, 426
MseI	TTAA	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	184
MspI	CCGG	1 cut(s)	145
MunI	CAATTG	1 cut(s)	241
MwoI	GCNNNNNNNGC	2 cut(s)	68, 77
NdeII	GATC	5 cut(s)	117, 160, 262, 267, 412
NlaIII	CATG	3 cut(s)	278, 289, 409
NlaIV	GGNNCC	1 cut(s)	437
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	289
PaqCI	CACCTGC	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	173, 239
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
PpuMI	RGGWCCY	1 cut(s)	436
Psp5II	RGGWCCY	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	437
PspPI	GGNCC	2 cut(s)	142, 436
PspPPI	RGGWCCY	1 cut(s)	436
PstI	CTGCAG	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	2 cut(s)	160, 267
RsaI	GTAC	3 cut(s)	105, 352, 364
RsaNI	GTAC	3 cut(s)	104, 351, 363
RseI	CAYNNNNRTG	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	2 cut(s)	172, 238
Sau3AI	GATC	5 cut(s)	117, 160, 262, 267, 412
Sau96I	GGNCC	2 cut(s)	142, 436
SchI	GAGTC	1 cut(s)	396
SetI	ASST	7 cut(s)	68, 82, 112, 203, 231, 236, 356
SfaNI	GCATC	1 cut(s)	188
SfcI	CTRYAG	1 cut(s)	156
SinI	GGWCC	2 cut(s)	142, 436
SmiMI	CAYNNNNRTG	1 cut(s)	184
Sse9I	AATT	4 cut(s)	4, 86, 148, 241
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	2 cut(s)	367, 373
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	421
TasI	AATT	4 cut(s)	4, 86, 148, 241
TatI	WGTACW	1 cut(s)	103
TauI	GCSGC	1 cut(s)	240
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	2 cut(s)	160, 386
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	171
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	4 cut(s)	17, 26, 114, 443
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	2 cut(s)	160, 386
VpaK11BI	GGWCC	2 cut(s)	142, 436
XapI	RAATTY	1 cut(s)	148
XbaI	TCTAGA	1 cut(s)	182
XceI	RCATGY	1 cut(s)	289
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.