Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Forward (+)

33395082 .. 33403641

Gene Structure 8560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1246400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCGAAAGTTTGTTAAGCAAATAATGATGAATATATTCCTCCCTCGACTTCTTCTTCTTCATTCTCTTTTGGTGGTTTGCTTTGCAACCTTTGCTTTCGGAGCTACTCGATTGCCACAAGATGAAGTGCAAGCTTTAGCTGACATAGCAAAGACACTAGGGAAGACGGGTTGGGATTTCAGTGTAGATCCATGCAGCGGCCAGCTTCCATGGACTAATATATCGAAAGTCGAAGGATTTAAGAGTGCCGTCACCTGTAATTGCTCCTTTGACGACTCCACTGTCTGCCATGTTACCAGCATAATTTTGAAAACTCAGGATTTGCCAGGAACACTCCCACGAGAAATGGTCAGGCTCAAATATCTGCAAGAAATCGACCTCACCCGGAACTACCTGAATGGTACCATCCCTCCAGAATGGAGCTCCCTTCAACTTGTCAACATCTCCCTCATTGGAAATCGTTTGACAGGTCCTATCCCGGTAGAGTTTGGAAACATCATCACCCTGAAGAGTTTGGACCTCAGTTCCAATTCTCTCTCTGGCGTTCTCCCTGAGGAGCTTGGGAATTTCCCAAACTTGGAAAGAATGATTCTTTCTTCAAACAACTTCACTGGGTTTTTGCCAAAAACATTTGCAAACCTTGCCACATTAAAGGACTTTCGGATCGGTGACACTAACTTTTCTGGGCAGATACCTGATTTTATTGAGAAGTGGACAAATCTTGAAAAACTTTTGATTCAGGCAAGTGGTTTGATGGGGCCAATTCCTTCCGGCATCTCTCGTTTGACAAGCTTAACTGACTTGAGAATTACTGACTTGAATAATATACCTGAATTAAACTTCCCTCCGCTCGATAATATGACAAACATGAAGACACTGATGTTGAGGAGTTGCAATATTATCGGAGAGCTACCTTCATATCTTGGGCAAATGACTAAATTGAAAGCTTTAGACCTCAGCTATAATAAGCTGACCGGAGAAATTCCAAGCAGCTACGCCAGTCTAGCAAAGGTGGAATATATATCGTATTGTGTCATCAATATCATAATTTCAAGTAATCAGCTTACTACATGGAGGAAAAATACAGAAAAGGGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

367

Amino Acids

40.72

Weight (kDa)

8.08

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	145 - 203	1e-05	Leucine rich repeat
LRR_14	PF23598	163 - 270	6.8e-07	Leucine-rich repeat region
LRR_8	PF13855	168 - 222	1.7e-07	Leucine rich repeat
LRR_ComC	PF24141	251 - 354	2.2e-06	EGF-like domain-containing protein ComC LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
Acc65I	GGTACC	1 cut(s)	401
AccB1I	GGYRCC	1 cut(s)	401
AccBSI	CCGCTC	1 cut(s)	850
AciI	CCGC	2 cut(s)	198, 848
AclWI	GGATC	2 cut(s)	182, 671
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	2 cut(s)	565, 981
AcuI	CTGAAG	1 cut(s)	527
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	2 cut(s)	197, 577
AgsI	TTSAA	7 cut(s)	310, 431, 600, 725, 820, 943, 1053
AjnI	CCWGG	1 cut(s)	325
Alw21I	GWGCWC	1 cut(s)	425
AlwI	GGATC	2 cut(s)	182, 671
AoxI	GGCC	2 cut(s)	199, 758
ApeKI	GCWGC	2 cut(s)	195, 990
ApoI	RAATTY	2 cut(s)	565, 981
Asp700I	GAANNNNTTC	1 cut(s)	35
Asp718I	GGTACC	1 cut(s)	401
AspS9I	GGNCC	3 cut(s)	470, 517, 758
AsuC2I	CCSGG	2 cut(s)	385, 479
AsuHPI	GGTGA	4 cut(s)	244, 373, 493, 680
AvaII	GGWCC	2 cut(s)	470, 517
AxyI	CCTNAGG	1 cut(s)	552
BanI	GGYRCC	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	425
BauI	CACGAG	1 cut(s)	339
BbsI	GAAGAC	2 cut(s)	170, 878
Bbv12I	GWGCWC	1 cut(s)	425
BbvCI	CCTCAGC	1 cut(s)	956
BbvI	GCAGC	2 cut(s)	207, 1002
BccI	CCATC	2 cut(s)	413, 748
BceAI	ACGGC	1 cut(s)	233
BcgI	CGANNNNNNTGC	2 cut(s)	883, 917
BciT130I	CCWGG	1 cut(s)	327
BcnI	CCSGG	2 cut(s)	385, 479
BfaI	CTAG	2 cut(s)	158, 1004
BisI	GCNGC	3 cut(s)	196, 199, 991
BlsI	GCNGC	3 cut(s)	197, 200, 992
Bme1390I	CCNGG	3 cut(s)	327, 385, 479
Bme18I	GGWCC	2 cut(s)	470, 517
BmgT120I	GGNCC	3 cut(s)	470, 517, 758
BmiI	GGNNCC	2 cut(s)	403, 759
BmrFI	CCNGG	3 cut(s)	327, 385, 479
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	1 cut(s)	783
BmuI	ACTGGG	1 cut(s)	621
BpiI	GAAGAC	2 cut(s)	170, 878
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	956
BpuEI	CTTGAG	1 cut(s)	823
BpuMI	CCSGG	2 cut(s)	385, 479
BsaJI	CCNNGG	1 cut(s)	209
BsaWI	WCCGGW	1 cut(s)	974
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 577
Bse1I	ACTGG	2 cut(s)	616, 999
Bse21I	CCTNAGG	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	2 cut(s)	197, 577
BseMII	CTCAG	4 cut(s)	329, 535, 543, 970
BseNI	ACTGG	2 cut(s)	616, 999
BseRI	GAGGAG	2 cut(s)	569, 901
BseXI	GCAGC	2 cut(s)	207, 1002
BshFI	GGCC	2 cut(s)	201, 760
BshNI	GGYRCC	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	425
BsiSI	CCGG	4 cut(s)	385, 479, 771, 975
BslI	CCNNNNNNNGG	2 cut(s)	197, 577
BsnI	GGCC	2 cut(s)	201, 760
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp143I	GATC	2 cut(s)	187, 663
Bsp19I	CCATGG	1 cut(s)	209
BspACI	CCGC	2 cut(s)	198, 848
BspANI	GGCC	2 cut(s)	201, 760
BspCNI	CTCAG	4 cut(s)	328, 534, 544, 969
BspLI	GGNNCC	2 cut(s)	403, 759
BspPI	GGATC	2 cut(s)	182, 671
BspT107I	GGYRCC	1 cut(s)	401
BsrBI	CCGCTC	1 cut(s)	850
BsrI	ACTGG	2 cut(s)	616, 999
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	2 cut(s)	187, 663
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	339
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	503
BstAPI	GCANNNNNTGC	2 cut(s)	92, 641
BstC8I	GCNNGC	2 cut(s)	132, 203
BstDEI	CTNAG	4 cut(s)	315, 521, 552, 956
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	405
BstKTI	GATC	2 cut(s)	190, 666
BstMBI	GATC	2 cut(s)	187, 663
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 101, 146, 641, 1004
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	3 cut(s)	325, 383, 477
BstV1I	GCAGC	2 cut(s)	207, 1002
BstV2I	GAAGAC	2 cut(s)	170, 878
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	201, 760
BtgI	CCRYGG	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	405
BtsIMutI	CAGTG	4 cut(s)	187, 279, 609, 875
Cac8I	GCNNGC	2 cut(s)	132, 203
Cfr13I	GGNCC	3 cut(s)	470, 517, 758
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	5 cut(s)	192, 210, 290, 868, 1071
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	4 cut(s)	315, 521, 552, 956
DpnI	GATC	2 cut(s)	189, 665
DpnII	GATC	2 cut(s)	187, 663
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	503
EarI	CTCTTC	1 cut(s)	503
Ecl136II	GAGCTC	1 cut(s)	423
Eco130I	CCWWGG	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	425
Eco47I	GGWCC	2 cut(s)	470, 517
Eco53kI	GAGCTC	1 cut(s)	423
Eco57I	CTGAAG	1 cut(s)	527
Eco81I	CCTNAGG	1 cut(s)	552
EcoICRI	GAGCTC	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	5 cut(s)	195, 213, 293, 871, 1074
FatI	CATG	5 cut(s)	191, 209, 289, 867, 1070
Fnu4HI	GCNGC	3 cut(s)	196, 199, 991
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	3 cut(s)	196, 199, 991
FspBI	CTAG	2 cut(s)	158, 1004
GluI	GCNGC	3 cut(s)	196, 199, 991
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	201, 760
HapII	CCGG	4 cut(s)	385, 479, 771, 975
Hin1II	CATG	5 cut(s)	195, 213, 293, 871, 1074
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HindIII	AAGCTT	3 cut(s)	132, 790, 945
HinfI	GANTC	3 cut(s)	275, 589, 736
HpaII	CCGG	4 cut(s)	385, 479, 771, 975
HphI	GGTGA	4 cut(s)	244, 373, 493, 680
Hpy166II	GTNNAC	2 cut(s)	439, 714
Hpy188I	TCNGA	3 cut(s)	101, 663, 905
Hpy188III	TCNNGA	3 cut(s)	317, 413, 722
Hpy8I	GTNNAC	2 cut(s)	439, 714
HpyAV	CCTTC	4 cut(s)	227, 437, 777, 924
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	6 cut(s)	86, 130, 195, 367, 635, 894
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 101, 146, 641, 1004
HpyF3I	CTNAG	4 cut(s)	315, 521, 552, 956
Hsp92II	CATG	5 cut(s)	195, 213, 293, 871, 1074
KpnI	GGTACC	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	187, 663
LmnI	GCTCC	5 cut(s)	101, 269, 420, 428, 556
Lsp1109I	GCAGC	2 cut(s)	207, 1002
LweI	GCATC	1 cut(s)	783
MaeI	CTAG	2 cut(s)	158, 1004
MaeIII	GTNAC	3 cut(s)	250, 292, 668
MalI	GATC	2 cut(s)	189, 665
MbiI	CCGCTC	1 cut(s)	850
MboI	GATC	2 cut(s)	187, 663
MboII	GAAGA	7 cut(s)	44, 47, 50, 175, 520, 588, 883
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	425
MlyI	GAGTC	1 cut(s)	269
MroXI	GAANNNNTTC	1 cut(s)	35
MseI	TTAA	5 cut(s)	15, 240, 650, 794, 836
MspA1I	CMGCKG	1 cut(s)	198
MspI	CCGG	4 cut(s)	385, 479, 771, 975
MspR9I	CCNGG	3 cut(s)	327, 385, 479
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	5 cut(s)	92, 101, 146, 641, 1004
NciI	CCSGG	2 cut(s)	385, 479
NcoI	CCATGG	1 cut(s)	209
NdeII	GATC	2 cut(s)	187, 663
NlaIII	CATG	5 cut(s)	195, 213, 293, 871, 1074
NlaIV	GGNNCC	2 cut(s)	403, 759
NmuCI	GTSAC	2 cut(s)	250, 668
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	2 cut(s)	589, 736
PkrI	GCNGC	3 cut(s)	197, 200, 992
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
PpuMI	RGGWCCY	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	425
Psp5II	RGGWCCY	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	403, 759
PspPI	GGNCC	3 cut(s)	470, 517, 758
PspPPI	RGGWCCY	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
SacI	GAGCTC	1 cut(s)	425
SaqAI	TTAA	5 cut(s)	15, 240, 650, 794, 836
SatI	GCNGC	3 cut(s)	196, 199, 991
Sau3AI	GATC	2 cut(s)	187, 663
Sau96I	GGNCC	3 cut(s)	470, 517, 758
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	3 cut(s)	327, 385, 479
SduI	GDGCHC	1 cut(s)	425
SfaNI	GCATC	1 cut(s)	783
SinI	GGWCC	2 cut(s)	470, 517
SmlI	CTYRAG	1 cut(s)	802
SmoI	CTYRAG	1 cut(s)	802
SsiI	CCGC	2 cut(s)	198, 848
SspI	AATATT	1 cut(s)	898
SspMI	CTAG	2 cut(s)	158, 1004
SstI	GAGCTC	1 cut(s)	425
StyD4I	CCNGG	3 cut(s)	325, 383, 477
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	283
TaqI	TCGA	6 cut(s)	46, 109, 224, 231, 375, 852
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	589, 736
Tru1I	TTAA	5 cut(s)	15, 240, 650, 794, 836
Tru9I	TTAA	5 cut(s)	15, 240, 650, 794, 836
TscAI	CASTG	4 cut(s)	187, 286, 616, 882
TseFI	GTSAC	2 cut(s)	250, 668
TseI	GCWGC	2 cut(s)	195, 990
Tsp45I	GTSAC	2 cut(s)	250, 668
TspDTI	ATGAA	5 cut(s)	44, 50, 138, 884, 906
TspRI	CASTG	4 cut(s)	187, 286, 616, 882
VpaK11BI	GGWCC	2 cut(s)	470, 517
XapI	RAATTY	2 cut(s)	565, 981
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	2 cut(s)	158, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.