Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003368.1

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Forward (+)

253947 .. 254399

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003368.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgaattacatgttcttattctctcagcttcttattggcacccatctcttgctagttttctctgcgagctttgctttcggagctaatcgattatcttcagatgaaatacaagctttaacggacatcggaaagacacttggtaagaactggaatttcagcgtagatccatgcagcggagaacttggatggattactgctccggatggccaatacatgaataacgtcacctgcggcaactgtagtactacctccaatactacggcagatcagatctgccatgtcacaaacatgtacgcaaactctctctctctctctctctctactgttcagaagatggctattctctttaacgaagaaaggtcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

121

Amino Acids

13.25

Weight (kDa)

4.78

Isoelectric Point (pI)

30.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	38
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	2 cut(s)	174, 231
AclWI	GGATC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	2 cut(s)	244, 293
AfiI	CCNNNNNNNGG	1 cut(s)	173
AflIII	ACRYGT	2 cut(s)	9, 288
AluBI	AGCT	4 cut(s)	28, 69, 83, 113
AluI	AGCT	4 cut(s)	28, 69, 83, 113
AlwI	GGATC	1 cut(s)	158
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	4 cut(s)	51, 180, 197, 328
BceAI	ACGGC	1 cut(s)	276
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	238
BfuAI	ACCTGC	1 cut(s)	236
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	2 cut(s)	172, 232
BlsI	GCNGC	2 cut(s)	173, 233
BmcAI	AGTACT	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	40
Bsa29I	ATCGAT	1 cut(s)	88
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	152
BseAI	TCCGGA	1 cut(s)	199
BseCI	ATCGAT	1 cut(s)	88
BseGI	GGATG	2 cut(s)	191, 208
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	183
BshFI	GGCC	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	38
BshVI	ATCGAT	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	173
BsnI	GGCC	1 cut(s)	207
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	3 cut(s)	163, 265, 270
BspACI	CCGC	2 cut(s)	174, 231
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	37
BspDI	ATCGAT	1 cut(s)	88
BspEI	TCCGGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	152
BssMI	GATC	3 cut(s)	163, 265, 270
Bst4CI	ACNGT	2 cut(s)	239, 325
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	191, 208
BstKTI	GATC	3 cut(s)	166, 268, 273
BstMBI	GATC	3 cut(s)	163, 265, 270
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 80
BstNSI	RCATGY	2 cut(s)	13, 292
BstSFI	CTRYAG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	183
BstX2I	RGATCY	2 cut(s)	163, 270
BstYI	RGATCY	2 cut(s)	163, 270
Bsu15I	ATCGAT	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	207
BsuTUI	ATCGAT	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	191, 208
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	1 cut(s)	67
ClaI	ATCGAT	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	243, 292
CviAII	CATG	5 cut(s)	10, 168, 214, 278, 289
CviJI	RGCY	6 cut(s)	28, 69, 83, 113, 207, 338
CviKI_1	RGCY	6 cut(s)	28, 69, 83, 113, 207, 338
CviQI	GTAC	2 cut(s)	243, 292
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	3 cut(s)	165, 267, 272
DpnII	GATC	3 cut(s)	163, 265, 270
EaeI	YGGCCR	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	81
FaeI	CATG	5 cut(s)	13, 171, 217, 281, 292
FaiI	YATR	6 cut(s)	11, 169, 215, 279, 290, 364
FatI	CATG	5 cut(s)	9, 167, 213, 277, 288
Fnu4HI	GCNGC	2 cut(s)	172, 232
FokI	GGATG	2 cut(s)	198, 215
Fsp4HI	GCNGC	2 cut(s)	172, 232
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	2 cut(s)	172, 232
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	1 cut(s)	200
Hin1II	CATG	5 cut(s)	13, 171, 217, 281, 292
HindIII	AAGCTT	1 cut(s)	111
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	1 cut(s)	217
Hpy188I	TCNGA	5 cut(s)	80, 100, 128, 270, 330
Hpy188III	TCNNGA	1 cut(s)	200
HpyCH4III	ACNGT	2 cut(s)	239, 325
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 80
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	5 cut(s)	13, 171, 217, 281, 292
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	163, 265, 270
LmnI	GCTCC	2 cut(s)	80, 202
LpnPI	CCDG	3 cut(s)	133, 213, 241
Lsp1109I	GCAGC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	223, 280
MalI	GATC	3 cut(s)	165, 267, 272
MboI	GATC	3 cut(s)	163, 265, 270
MboII	GAAGA	3 cut(s)	87, 343, 365
MflI	RGATCY	2 cut(s)	163, 270
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	2 cut(s)	4, 151
MluNI	TGGCCA	1 cut(s)	207
MnlI	CCTC	1 cut(s)	259
Mox20I	TGGCCA	1 cut(s)	207
MroI	TCCGGA	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	2 cut(s)	116, 348
MslI	CAYNNNNRTG	1 cut(s)	287
Msp20I	TGGCCA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	71, 80
NdeII	GATC	3 cut(s)	163, 265, 270
NlaIII	CATG	5 cut(s)	13, 171, 217, 281, 292
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	2 cut(s)	223, 280
NspI	RCATGY	2 cut(s)	13, 292
PaqCI	CACCTGC	1 cut(s)	236
PciI	ACATGT	2 cut(s)	9, 288
PkrI	GCNGC	2 cut(s)	173, 233
PscI	ACATGT	2 cut(s)	9, 288
PspN4I	GGNNCC	1 cut(s)	40
PsuI	RGATCY	2 cut(s)	163, 270
RsaI	GTAC	2 cut(s)	244, 293
RsaNI	GTAC	2 cut(s)	243, 292
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	116, 348
SatI	GCNGC	2 cut(s)	172, 232
Sau3AI	GATC	3 cut(s)	163, 265, 270
ScaI	AGTACT	1 cut(s)	244
SetI	ASST	8 cut(s)	30, 71, 85, 115, 225, 230, 251, 362
SfcI	CTRYAG	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	287
Sse9I	AATT	2 cut(s)	4, 151
SsiI	CCGC	2 cut(s)	174, 231
SspMI	CTAG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	239, 325
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	88
TasI	AATT	2 cut(s)	4, 151
TatI	WGTACW	1 cut(s)	242
TauI	GCSGC	1 cut(s)	234
Tru1I	TTAA	2 cut(s)	116, 348
Tru9I	TTAA	2 cut(s)	116, 348
TseFI	GTSAC	2 cut(s)	223, 280
TseI	GCWGC	1 cut(s)	171
Tsp45I	GTSAC	2 cut(s)	223, 280
TspDTI	ATGAA	3 cut(s)	17, 117, 230
TspGWI	ACGGA	1 cut(s)	134
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	2 cut(s)	13, 292
XspI	CTAG	1 cut(s)	53
ZrmI	AGTACT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.