Rh5DG211700

leucine-rich repeat receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002057
Physical Location & Seq
Reverse (-)
23737613 .. 23754946
17334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG211700.1

Sequence Viewer

Length: 1152 bp
ATGAAAATGAATTGCACATTCTTCTTCCCTCGGCTTCTTCTTTCTCTGTCTCTCCTGCTAGTTTGCTCTGCAACTTTTGCTTTCGGAGCCACTCGATTACCAGAAGATGAAGTTGAGGCTTTGAAGGACATAGCAAAGACGCTGGGGAAGACGAACTGGAATTTCAGCGCTGATCCCTGTGGCAATGATTACGGGTGGGCTAATCTGAACCCGGTAAAAGGATCCGAAGATGCCGTCACCTGCAATTGTACCTTAGTTCCCAATTCCACTGTCTGCCACGTCACCAGCATAGTATTGAAATCTCAGAATTTGCTGGGAAAACTCCCGCCAGAGTTGATCAGGCTCCCCTATCTTCAAGAAATTGACCTCACCCGCAACTACCTGAATGGCACCATCCCTCCAGAATGGGGTGCCCTGCCACTACTTAACATGAGAGTTACTGACTTGAATGGACCTGATTCATCGCTTCCTCCACTTGAGAATATGAAAAAACTGAAGACACTGATGTTGCGGAATTGCAATATTAGTGGACAGCTACCTGCATATCTTGGGGGAATGACGACTTTGAAAACTTTAGACCTCAGCTTTAACAAGCTAACTGGAGAAATTCCAAGCAGCTTTTCTGGACTAGCAAATGTGGATTACATGTTCTTGACTGGAAATATGCTCACGGGATCTGTGCCAGATTGGCTGAAAGGAGACAACATTGATCTTTCATACAACGATTTCACCACTAAGTCAGCAGCTGTCAGTTGTGAACCACAAGGCGGCTTGAACTTGTTTGCAAGCTCTTCTGGTGGCAATACTTCATCTGTTTCATGTTTGAAAATTGCAAAATGTCCAAAAAACTTTGAACCCCCACAAGAGGCCTCGGCAGGAGGTGGAGGTGGAAGTGGAATATCTACATTGATTTTCTGTGCCATGATTTGCAAGAAGGAAGATATCTTGCCGAACAATGATTTCCAGCCCATCCGTCCCATCACTGGAGCCTCTTCGCAATCCCCAAGTTTTGATGCTACACCTAATCTCGGAGGTGGAGGAGGATCCACTAGGGCTTGGAACTCCCAAGAGTCCAAGTCCAACACCAATACTCCCATCAGAGTAATTAACCCCTCTCTCAGAATCTCATTCTTCATGGTGCTAGTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

383

Amino Acids

41.06

Weight (kDa)

5.98

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 164 - 223 5.2e-10 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 248
Acc36I ACCTGC 2 cut(s) 248, 547
AccB1I GGYRCC 2 cut(s) 389, 410
AciI CCGC 4 cut(s) 326, 373, 511, 768
AclWI GGATC 6 cut(s) 167, 216, 229, 682, 1038, 1051
AcsI RAATTY 3 cut(s) 160, 307, 606
AcuI CTGAAG 1 cut(s) 515
AfaI GTAC 1 cut(s) 250
AfeI AGCGCT 1 cut(s) 169
AfiI CCNNNNNNNGG 6 cut(s) 218, 407, 767, 865, 983, 1028
AflIII ACRYGT 1 cut(s) 645
AgsI TTSAA 8 cut(s) 124, 298, 356, 448, 568, 775, 826, 854
AjiI CACGTC 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 604, 636
AloI GAACNNNNNNTCC 2 cut(s) 632, 664
AluBI AGCT 6 cut(s) 535, 585, 595, 618, 746, 789
AluI AGCT 6 cut(s) 535, 585, 595, 618, 746, 789
Alw26I GTCTC 2 cut(s) 54, 693
AlwI GGATC 6 cut(s) 167, 216, 229, 682, 1038, 1051
AlwNI CAGNNNCTG 1 cut(s) 746
Aor51HI AGCGCT 1 cut(s) 169
AoxI GGCC 1 cut(s) 867
ApeKI GCWGC 2 cut(s) 615, 743
ApoI RAATTY 3 cut(s) 160, 307, 606
ArsI GACNNNNNNTTYG 2 cut(s) 219, 251
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 452
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 4 cut(s) 229, 274, 361, 721
AvaII GGWCC 1 cut(s) 452
BaeGI GKGCMC 1 cut(s) 415
BamHI GGATCC 2 cut(s) 221, 1043
BanI GGYRCC 2 cut(s) 389, 410
BbsI GAAGAC 2 cut(s) 155, 503
BbvCI CCTCAGC 1 cut(s) 581
BbvI GCAGC 2 cut(s) 627, 755
BccI CCATC 4 cut(s) 401, 977, 986, 1103
BceAI ACGGC 1 cut(s) 218
BclI TGATCA 1 cut(s) 336
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 2 cut(s) 54, 693
BfaI CTAG 4 cut(s) 59, 629, 1050, 1142
BfoI RGCGCY 1 cut(s) 171
BfuAI ACCTGC 2 cut(s) 248, 547
BglI GCCNNNNNGGC 1 cut(s) 688
BisI GCNGC 3 cut(s) 616, 744, 769
BlsI GCNGC 3 cut(s) 617, 745, 770
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 452
BmgBI CACGTC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 7 cut(s) 88, 223, 344, 391, 412, 988, 1045
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 2 cut(s) 220, 1003
BpiI GAAGAC 2 cut(s) 155, 503
BpmI CTGGAG 3 cut(s) 384, 621, 1005
Bpu10I CCTNAGC 1 cut(s) 581
BpuEI CTTGAG 1 cut(s) 497
BpuMI CCSGG 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 29, 870
BsaXI ACNNNNNCTCC 4 cut(s) 382, 412, 1075, 1105
Bsc4I CCNNNNNNNGG 6 cut(s) 218, 407, 767, 865, 983, 1028
Bse1I ACTGG 4 cut(s) 161, 604, 661, 988
Bse3DI GCAATG 1 cut(s) 190
BseDI CCNNGG 2 cut(s) 29, 870
BseGI GGATG 2 cut(s) 393, 969
BseLI CCNNNNNNNGG 6 cut(s) 218, 407, 767, 865, 983, 1028
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 3 cut(s) 317, 595, 1132
BseNI ACTGG 4 cut(s) 161, 604, 661, 988
BseRI GAGGAG 1 cut(s) 1053
BseSI GKGCMC 1 cut(s) 415
BseXI GCAGC 2 cut(s) 627, 755
BseYI CCCAGC 2 cut(s) 142, 313
BshFI GGCC 1 cut(s) 869
BshNI GGYRCC 2 cut(s) 389, 410
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 960
BslI CCNNNNNNNGG 6 cut(s) 218, 407, 767, 865, 983, 1028
BsmAI GTCTC 2 cut(s) 54, 693
BsmFI GGGAC 1 cut(s) 960
BsnI GGCC 1 cut(s) 869
Bsp1286I GDGCHC 1 cut(s) 415
Bsp143I GATC 6 cut(s) 172, 221, 336, 674, 709, 1043
BspACI CCGC 4 cut(s) 326, 373, 511, 768
BspANI GGCC 1 cut(s) 869
BspCNI CTCAG 3 cut(s) 316, 594, 1131
BspLI GGNNCC 7 cut(s) 88, 223, 344, 391, 412, 988, 1045
BspMI ACCTGC 2 cut(s) 248, 547
BspPI GGATC 6 cut(s) 167, 216, 229, 682, 1038, 1051
BspQI GCTCTTC 1 cut(s) 796
BspT107I GGYRCC 2 cut(s) 389, 410
BsrDI GCAATG 1 cut(s) 190
BsrI ACTGG 4 cut(s) 161, 604, 661, 988
BssECI CCNNGG 2 cut(s) 29, 870
BssMI GATC 6 cut(s) 172, 221, 336, 674, 709, 1043
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 2 cut(s) 796, 997
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 787
BstDEI CTNAG 6 cut(s) 253, 303, 581, 735, 1118, 1149
BstF5I GGATG 2 cut(s) 393, 969
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 6 cut(s) 175, 224, 339, 677, 712, 1046
BstMAI GTCTC 2 cut(s) 54, 693
BstMBI GATC 6 cut(s) 172, 221, 336, 674, 709, 1043
BstMWI GCNNNNNNNGC 3 cut(s) 77, 86, 688
BstNSI RCATGY 1 cut(s) 649
BstSCI CCNGG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 415
BstV1I GCAGC 2 cut(s) 627, 755
BstV2I GAAGAC 2 cut(s) 155, 503
BstX2I RGATCY 3 cut(s) 221, 674, 1043
BstYI RGATCY 3 cut(s) 221, 674, 1043
BsuRI GGCC 1 cut(s) 869
BtgZI GCGATG 1 cut(s) 447
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 2 cut(s) 393, 969
BtsIMutI CAGTG 3 cut(s) 267, 500, 981
BveI ACCTGC 2 cut(s) 248, 547
Cac8I GCNNGC 1 cut(s) 787
CaiI CAGNNNCTG 1 cut(s) 746
CfoI GCGC 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 452
CseI GACGC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 249
CspCI CAANNNNNGTGG 2 cut(s) 508, 543
CviAII CATG 5 cut(s) 430, 646, 819, 922, 1135
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 6 cut(s) 253, 303, 581, 735, 1118, 1149
DpnI GATC 6 cut(s) 174, 223, 338, 676, 711, 1045
DpnII GATC 6 cut(s) 172, 221, 336, 674, 709, 1043
Eam1104I CTCTTC 2 cut(s) 796, 997
EarI CTCTTC 2 cut(s) 796, 997
Eco147I AGGCCT 1 cut(s) 869
Eco32I GATATC 1 cut(s) 943
Eco47I GGWCC 1 cut(s) 452
Eco47III AGCGCT 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 515
EcoRV GATATC 1 cut(s) 943
FaeI CATG 5 cut(s) 433, 649, 822, 925, 1138
FaqI GGGAC 1 cut(s) 960
FatI CATG 5 cut(s) 429, 645, 818, 921, 1134
FauI CCCGC 2 cut(s) 333, 380
FbaI TGATCA 1 cut(s) 336
Fnu4HI GCNGC 3 cut(s) 616, 744, 769
FokI GGATG 2 cut(s) 380, 956
Fsp4HI GCNGC 3 cut(s) 616, 744, 769
FspBI CTAG 4 cut(s) 59, 629, 1050, 1142
GlaI GCGC 1 cut(s) 169
GluI GCNGC 3 cut(s) 616, 744, 769
GsaI CCCAGC 2 cut(s) 146, 317
GsuI CTGGAG 3 cut(s) 384, 621, 1005
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 1 cut(s) 869
HapII CCGG 1 cut(s) 212
HgaI GACGC 1 cut(s) 148
HhaI GCGC 1 cut(s) 170
Hin1II CATG 5 cut(s) 433, 649, 822, 925, 1138
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HinfI GANTC 3 cut(s) 458, 1070, 1122
HpaII CCGG 1 cut(s) 212
HphI GGTGA 4 cut(s) 229, 274, 361, 721
Hpy166II GTNNAC 2 cut(s) 530, 758
Hpy188I TCNGA 7 cut(s) 86, 207, 226, 306, 1031, 1100, 1121
Hpy188III TCNNGA 4 cut(s) 356, 401, 624, 652
Hpy8I GTNNAC 2 cut(s) 530, 758
HpyAV CCTTC 2 cut(s) 118, 928
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 8 cut(s) 15, 71, 243, 519, 542, 785, 833, 930
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 86, 688
HpyF3I CTNAG 6 cut(s) 253, 303, 581, 735, 1118, 1149
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 5 cut(s) 433, 649, 822, 925, 1138
HspAI GCGC 1 cut(s) 168
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 6 cut(s) 172, 221, 336, 674, 709, 1043
LguI GCTCTTC 1 cut(s) 796
LmnI GCTCC 3 cut(s) 86, 348, 986
Lsp1109I GCAGC 2 cut(s) 627, 755
LweI GCATC 2 cut(s) 220, 1003
MaeI CTAG 4 cut(s) 59, 629, 1050, 1142
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 3 cut(s) 235, 280, 436
MalI GATC 6 cut(s) 174, 223, 338, 676, 711, 1045
MboI GATC 6 cut(s) 172, 221, 336, 674, 709, 1043
MfeI CAATTG 1 cut(s) 244
MflI RGATCY 3 cut(s) 221, 674, 1043
MhlI GDGCHC 1 cut(s) 415
MlyI GAGTC 1 cut(s) 1079
MmeI TCCRAC 1 cut(s) 1104
MseI TTAA 3 cut(s) 426, 588, 1107
MspA1I CMGCKG 1 cut(s) 746
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 212
MunI CAATTG 1 cut(s) 244
MwoI GCNNNNNNNGC 3 cut(s) 77, 86, 688
NciI CCSGG 1 cut(s) 212
NdeII GATC 6 cut(s) 172, 221, 336, 674, 709, 1043
NlaIII CATG 5 cut(s) 433, 649, 822, 925, 1138
NlaIV GGNNCC 7 cut(s) 88, 223, 344, 391, 412, 988, 1045
NmeAIII GCCGAG 2 cut(s) 10, 851
NmuCI GTSAC 2 cut(s) 235, 280
NspI RCATGY 1 cut(s) 649
PaqCI CACCTGC 1 cut(s) 248
PceI AGGCCT 1 cut(s) 869
PciI ACATGT 1 cut(s) 645
PciSI GCTCTTC 1 cut(s) 796
PfeI GAWTC 2 cut(s) 458, 1122
PkrI GCNGC 3 cut(s) 617, 745, 770
PleI GAGTC 1 cut(s) 1078
PpsI GAGTC 1 cut(s) 1078
PscI ACATGT 1 cut(s) 645
PspFI CCCAGC 2 cut(s) 142, 313
PspN4I GGNNCC 7 cut(s) 88, 223, 344, 391, 412, 988, 1045
PspPI GGNCC 1 cut(s) 452
PstNI CAGNNNCTG 1 cut(s) 746
PsuI RGATCY 3 cut(s) 221, 674, 1043
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 796
SaqAI TTAA 3 cut(s) 426, 588, 1107
SatI GCNGC 3 cut(s) 616, 744, 769
Sau3AI GATC 6 cut(s) 172, 221, 336, 674, 709, 1043
Sau96I GGNCC 1 cut(s) 452
SchI GAGTC 1 cut(s) 1079
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 1 cut(s) 415
SfaNI GCATC 2 cut(s) 220, 1003
SinI GGWCC 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
SseBI AGGCCT 1 cut(s) 869
SsiI CCGC 4 cut(s) 326, 373, 511, 768
SspI AATATT 1 cut(s) 523
SspMI CTAG 4 cut(s) 59, 629, 1050, 1142
StuI AGGCCT 1 cut(s) 869
StyD4I CCNGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 94
TauI GCSGC 1 cut(s) 771
TfiI GAWTC 2 cut(s) 458, 1122
Tru1I TTAA 3 cut(s) 426, 588, 1107
Tru9I TTAA 3 cut(s) 426, 588, 1107
TscAI CASTG 3 cut(s) 274, 507, 988
TseFI GTSAC 2 cut(s) 235, 280
TseI GCWGC 2 cut(s) 615, 743
Tsp45I GTSAC 2 cut(s) 235, 280
TspDTI ATGAA 9 cut(s) 17, 23, 123, 450, 500, 705, 798, 807, 1123
TspGWI ACGGA 1 cut(s) 962
TspRI CASTG 3 cut(s) 274, 507, 988
VpaK11BI GGWCC 1 cut(s) 452
XapI RAATTY 3 cut(s) 160, 307, 606
XceI RCATGY 1 cut(s) 649
XspI CTAG 4 cut(s) 59, 629, 1050, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.