Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Forward (+)

70734666 .. 70741301

Gene Structure 6636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAATTACACATTCTTCTTCCCTAGGCTTCTTGTTCATTTTATCTTGCTGGTTATCTATGCAAGCTTTGCTTTCGGAGCTACCCGATTACCAGAAGATGAAGAACAAGCTTTAAGGAGCATTGGAAAGAGACTGGGAAAGGATTGGGATTTCACGGCAGATCCCTGTAGCGAAGCATCTGGATGGATTAATACTACCTCAGGAAGCGCAGCTGATAACAACGTCACCTGCGGCAATTGTAGTACTGCTGGCGATGATCAGATCTGCCATGTTACAATCATATCTCTGAAATCCCTGGATTTGGCAGGAACACTCCCACCAGAGATGGCGAACCTCACCTATCTACAAACAATTTCCCTTGTTGGAAACCGTTTGACAGGCTCTATCCCCATTGAGATCGGAAACATTAGCACCCTGCAAAGTTTGGACATCACTTCCAATAATTTTTCAGGACCTCTTCCTCTGGAGCTTGGGAATTTAATCAGCATAAAGAGAATGCTTCTTTCCTCAAACAATTTTACTGGGAAGTTGCCCGAAACATTTGCAAGGCTTACCACATTAACGGACTTTCGGGTTGATGACAATCACTTTTCTGGGAAGATACCTGATTTCATTCAGAACTGGACAAATCTTACAAAACTAGTAATTCAGGCTAGTGGTTTGACTGGGCCAATTCCATCCAACATCTCTCTTTTGATGGAATTAACTGACCTGAGAATTACTGACTTGGATGGACCTGAAGCACATTTTCCTCCACTTGATAAAATGACAAAACTGGAAACACTGATGTTGAGGAATTGCAATCTTACTGGAGAGCTACCTACGGATCTTGTGAAACTGACAGAGTTGAACAACTTAGACCTCAGCTTTAACAAGCTTACTGGGACAATTCCTAGCCCCTTTGTTTATAATGATAAATTGGATTACATATTCTTAACTGGAAACTTGCTGAATGGAACAGTGCCTGAATCGCTGAAAGGAAACAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

330

Amino Acids

36.21

Weight (kDa)

4.75

Isoelectric Point (pI)

27.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	86 - 192	1.5e-06	Leucine-rich repeat region
LRR_14	PF23598	133 - 240	6.1e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	909
AarI	CACCTGC	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	236
AciI	CCGC	1 cut(s)	231
AclWI	GGATC	2 cut(s)	155, 834
AcsI	RAATTY	1 cut(s)	475
AcuI	CTGAAG	1 cut(s)	759
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflIII	ACRYGT	1 cut(s)	987
AgsI	TTSAA	1 cut(s)	850
AhlI	ACTAGT	1 cut(s)	640
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	8 cut(s)	66, 80, 110, 212, 469, 817, 867, 877
AluI	AGCT	8 cut(s)	66, 80, 110, 212, 469, 817, 867, 877
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	2 cut(s)	155, 834
AlwNI	CAGNNNCTG	1 cut(s)	965
AoxI	GGCC	1 cut(s)	668
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	475
AseI	ATTAAT	1 cut(s)	189
AspA2I	CCTAGG	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	3 cut(s)	452, 668, 734
AsuHPI	GGTGA	2 cut(s)	217, 328
AvaII	GGWCC	2 cut(s)	452, 734
AvrII	CCTAGG	1 cut(s)	23
AxyI	CCTNAGG	1 cut(s)	199
BbvCI	CCTCAGC	1 cut(s)	863
BbvI	GCAGC	1 cut(s)	221
BccI	CCATC	5 cut(s)	177, 319, 685, 691, 725
BceAI	ACGGC	1 cut(s)	171
BcgI	CGANNNNNNTGC	2 cut(s)	524, 558
BciT130I	CCWGG	1 cut(s)	296
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	124
BcuI	ACTAGT	1 cut(s)	640
BfaI	CTAG	4 cut(s)	24, 641, 654, 894
BfmI	CTRYAG	1 cut(s)	166
BfuAI	ACCTGC	1 cut(s)	236
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	2 cut(s)	210, 232
BlnI	CCTAGG	1 cut(s)	23
BlsI	GCNGC	2 cut(s)	211, 233
BmcAI	AGTACT	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	2 cut(s)	452, 734
BmgT120I	GGNCC	3 cut(s)	452, 668, 734
BmrFI	CCNGG	1 cut(s)	296
BmrI	ACTGGG	4 cut(s)	143, 531, 675, 891
BmsI	GCATC	1 cut(s)	185
BmuI	ACTGGG	4 cut(s)	143, 531, 675, 891
BpmI	CTGGAG	2 cut(s)	485, 831
Bpu10I	CCTNAGC	1 cut(s)	863
BsaBI	GATNNNNATC	1 cut(s)	582
BsaJI	CCNNGG	2 cut(s)	23, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	8 cut(s)	138, 526, 626, 670, 780, 814, 886, 943
Bse21I	CCTNAGG	1 cut(s)	199
Bse8I	GATNNNNATC	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	2 cut(s)	23, 294
BseGI	GGATG	3 cut(s)	188, 677, 736
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	3 cut(s)	213, 704, 877
BseNI	ACTGG	8 cut(s)	138, 526, 626, 670, 780, 814, 886, 943
BseXI	GCAGC	1 cut(s)	221
BshFI	GGCC	1 cut(s)	670
BslFI	GGGAC	1 cut(s)	898
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	898
BsmI	GAATGC	1 cut(s)	501
BsnI	GGCC	1 cut(s)	670
Bsp143I	GATC	5 cut(s)	160, 256, 261, 396, 826
BspACI	CCGC	1 cut(s)	231
BspANI	GGCC	1 cut(s)	670
BspCNI	CTCAG	3 cut(s)	212, 705, 876
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	2 cut(s)	155, 834
BsrI	ACTGG	8 cut(s)	138, 526, 626, 670, 780, 814, 886, 943
BssECI	CCNNGG	2 cut(s)	23, 294
BssMI	GATC	5 cut(s)	160, 256, 261, 396, 826
BssT1I	CCWWGG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	2 cut(s)	371, 961
Bst6I	CTCTTC	1 cut(s)	462
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	64, 250
BstDEI	CTNAG	4 cut(s)	199, 713, 856, 863
BstF5I	GGATG	3 cut(s)	188, 677, 736
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	5 cut(s)	163, 259, 264, 399, 829
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	5 cut(s)	160, 256, 261, 396, 826
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 77, 970
BstNI	CCWGG	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	991
BstSCI	CCNGG	1 cut(s)	294
BstSFI	CTRYAG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	221
BstX2I	RGATCY	3 cut(s)	160, 261, 826
BstYI	RGATCY	3 cut(s)	160, 261, 826
Bsu36I	CCTNAGG	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	670
BtgZI	GCGATG	1 cut(s)	267
BtsCI	GGATG	3 cut(s)	188, 677, 736
BtsIMutI	CAGTG	2 cut(s)	782, 966
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	2 cut(s)	64, 250
CaiI	CAGNNNCTG	1 cut(s)	965
CfoI	GCGC	1 cut(s)	209
Cfr13I	GGNCC	3 cut(s)	452, 668, 734
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	2 cut(s)	269, 988
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	4 cut(s)	199, 713, 856, 863
DpnI	GATC	5 cut(s)	162, 258, 263, 398, 828
DpnII	GATC	5 cut(s)	160, 256, 261, 396, 826
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	23
Eco47I	GGWCC	2 cut(s)	452, 734
Eco57I	CTGAAG	1 cut(s)	759
Eco81I	CCTNAGG	1 cut(s)	199
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	2 cut(s)	272, 991
FaiI	YATR	7 cut(s)	60, 270, 281, 488, 909, 929, 989
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	1 cut(s)	898
FatI	CATG	2 cut(s)	268, 987
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	210, 232
FokI	GGATG	3 cut(s)	195, 664, 743
Fsp4HI	GCNGC	2 cut(s)	210, 232
FspBI	CTAG	4 cut(s)	24, 641, 654, 894
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	2 cut(s)	210, 232
GsuI	CTGGAG	2 cut(s)	485, 831
HaeIII	GGCC	1 cut(s)	670
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	2 cut(s)	272, 991
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HindIII	AAGCTT	3 cut(s)	64, 108, 875
HinfI	GANTC	1 cut(s)	968
HphI	GGTGA	2 cut(s)	217, 328
Hpy188I	TCNGA	5 cut(s)	77, 261, 288, 401, 618
Hpy188III	TCNNGA	4 cut(s)	180, 201, 450, 464
HpyCH4III	ACNGT	2 cut(s)	371, 961
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	4 cut(s)	62, 418, 545, 801
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 77, 970
HpyF3I	CTNAG	4 cut(s)	199, 713, 856, 863
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	272, 991
HspAI	GCGC	1 cut(s)	207
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	5 cut(s)	160, 256, 261, 396, 826
LmnI	GCTCC	3 cut(s)	77, 117, 466
Lsp1109I	GCAGC	1 cut(s)	221
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	4 cut(s)	24, 641, 654, 894
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	223, 271
MalI	GATC	5 cut(s)	162, 258, 263, 398, 828
MboI	GATC	5 cut(s)	160, 256, 261, 396, 826
MboII	GAAGA	6 cut(s)	7, 10, 107, 113, 449, 610
MfeI	CAATTG	1 cut(s)	235
MflI	RGATCY	3 cut(s)	160, 261, 826
MmeI	TCCRAC	2 cut(s)	343, 705
MnlI	CCTC	8 cut(s)	208, 344, 465, 471, 517, 762, 786, 872
MseI	TTAA	7 cut(s)	113, 189, 479, 560, 704, 870, 935
MslI	CAYNNNNRTG	1 cut(s)	181
MspA1I	CMGCKG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	296
MunI	CAATTG	1 cut(s)	235
Mva1269I	GAATGC	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	3 cut(s)	68, 77, 970
NdeII	GATC	5 cut(s)	160, 256, 261, 396, 826
NlaIII	CATG	2 cut(s)	272, 991
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	991
PaqCI	CACCTGC	1 cut(s)	236
PciI	ACATGT	1 cut(s)	987
PctI	GAATGC	1 cut(s)	501
PfeI	GAWTC	1 cut(s)	968
PkrI	GCNGC	2 cut(s)	211, 233
PpuMI	RGGWCCY	1 cut(s)	452
PscI	ACATGT	1 cut(s)	987
PshBI	ATTAAT	1 cut(s)	189
PsiI	TTATAA	1 cut(s)	909
Psp5II	RGGWCCY	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspPI	GGNCC	3 cut(s)	452, 668, 734
PspPPI	RGGWCCY	1 cut(s)	452
PstNI	CAGNNNCTG	1 cut(s)	965
PsuI	RGATCY	3 cut(s)	160, 261, 826
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	181
SaqAI	TTAA	7 cut(s)	113, 189, 479, 560, 704, 870, 935
SatI	GCNGC	2 cut(s)	210, 232
Sau3AI	GATC	5 cut(s)	160, 256, 261, 396, 826
Sau96I	GGNCC	3 cut(s)	452, 668, 734
ScaI	AGTACT	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	296
SfaNI	GCATC	1 cut(s)	185
SfcI	CTRYAG	1 cut(s)	166
SinI	GGWCC	2 cut(s)	452, 734
SmiMI	CAYNNNNRTG	1 cut(s)	181
SpeI	ACTAGT	1 cut(s)	640
SsiI	CCGC	1 cut(s)	231
SspMI	CTAG	4 cut(s)	24, 641, 654, 894
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	2 cut(s)	371, 961
TaiI	ACGT	1 cut(s)	225
TatI	WGTACW	1 cut(s)	242
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	968
Tru1I	TTAA	7 cut(s)	113, 189, 479, 560, 704, 870, 935
Tru9I	TTAA	7 cut(s)	113, 189, 479, 560, 704, 870, 935
TscAI	CASTG	2 cut(s)	789, 966
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	4 cut(s)	17, 26, 114, 601
TspGWI	ACGGA	2 cut(s)	578, 839
TspRI	CASTG	2 cut(s)	789, 966
VpaK11BI	GGWCC	2 cut(s)	452, 734
VspI	ATTAAT	1 cut(s)	189
XapI	RAATTY	1 cut(s)	475
XceI	RCATGY	1 cut(s)	991
XmaJI	CCTAGG	1 cut(s)	23
XspI	CTAG	4 cut(s)	24, 641, 654, 894
ZrmI	AGTACT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.