Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

23582304 .. 23585619

Gene Structure 3316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG229300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAACAACTACATGTTGATCAATCAGCTTCTGGTTCATTTTCTACTGCTACTTTGCTTTGCAACCTTGGCTTTCGGAGCTGATCGATTAATAGCCGATGAAGGTATAACTGAATATATAAGAGTAGATATGACTTGTGAGAATGTCTTACTAGATTGGGCATATGCATGTACGTGTTCAATTGTTGCCTTTTACTGTGTATTTGTAGTACAAGCTTTGAAGAACATAGCAAAGACACTGGGGAAGACAGACTGGGATTTTGATGTCGATCCATGTAGCAGAGAATCTGGATGGATTCCTCAAGCCGACCAGCAAGAATATTTTGTGAATAACGTCACCTGCGGCAATTGTACGATTTCCGATGAGGCCAATGCCACCAGTGCTGATCGGATCTGCCATGTTGTTAGCATGTATGTCTCTCTCTCTCTCTCATGCTTGCGACAAATGTTATTCACACACATTTTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

156

Amino Acids

17.64

Weight (kDa)

4.47

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	469
AarI	CACCTGC	1 cut(s)	347
Acc36I	ACCTGC	1 cut(s)	347
AciI	CCGC	1 cut(s)	342
AclWI	GGATC	2 cut(s)	263, 398
AfaI	GTAC	3 cut(s)	172, 210, 352
AflIII	ACRYGT	2 cut(s)	12, 173
AgsI	TTSAA	2 cut(s)	180, 220
AluBI	AGCT	3 cut(s)	28, 80, 215
AluI	AGCT	3 cut(s)	28, 80, 215
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	2 cut(s)	263, 398
AlwNI	CAGNNNCTG	1 cut(s)	31
AoxI	GGCC	1 cut(s)	366
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AseI	ATTAAT	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	251
BccI	CCATC	1 cut(s)	285
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	347
BisI	GCNGC	1 cut(s)	343
BlsI	GCNGC	1 cut(s)	344
BmrI	ACTGGG	2 cut(s)	248, 262
BmuI	ACTGGG	2 cut(s)	248, 262
BpiI	GAAGAC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	285
Bsa29I	ATCGAT	1 cut(s)	85
BsaAI	YACGTR	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	66
Bse1I	ACTGG	3 cut(s)	243, 257, 378
Bse8I	GATNNNNATC	1 cut(s)	267
BseCI	ATCGAT	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	296
BseJI	GATNNNNATC	1 cut(s)	267
BseNI	ACTGG	3 cut(s)	243, 257, 378
BshFI	GGCC	1 cut(s)	368
BshVI	ATCGAT	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	421
BsnI	GGCC	1 cut(s)	368
Bsp143I	GATC	5 cut(s)	18, 82, 268, 385, 390
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	1 cut(s)	368
BspDI	ATCGAT	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	347
BspPI	GGATC	2 cut(s)	263, 398
BsrI	ACTGG	3 cut(s)	243, 257, 378
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	5 cut(s)	18, 82, 268, 385, 390
BssT1I	CCWWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	197
BstBAI	YACGTR	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	437
BstF5I	GGATG	1 cut(s)	296
BstKTI	GATC	5 cut(s)	21, 85, 271, 388, 393
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	5 cut(s)	18, 82, 268, 385, 390
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 77, 380
BstNSI	RCATGY	3 cut(s)	16, 171, 412
BstV2I	GAAGAC	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	390
Bsu15I	ATCGAT	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	368
BsuTUI	ATCGAT	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	296
BtsIMutI	CAGTG	2 cut(s)	236, 385
BveI	ACCTGC	1 cut(s)	347
Cac8I	GCNNGC	1 cut(s)	437
CaiI	CAGNNNCTG	1 cut(s)	31
ClaI	ATCGAT	1 cut(s)	85
Csp6I	GTAC	3 cut(s)	171, 209, 351
CviAII	CATG	6 cut(s)	13, 168, 273, 398, 409, 432
CviJI	RGCY	7 cut(s)	28, 71, 80, 95, 215, 305, 368
CviKI_1	RGCY	7 cut(s)	28, 71, 80, 95, 215, 305, 368
CviQI	GTAC	3 cut(s)	171, 209, 351
DpnI	GATC	5 cut(s)	20, 84, 270, 387, 392
DpnII	GATC	5 cut(s)	18, 82, 268, 385, 390
Eco130I	CCWWGG	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	66
EcoT22I	ATGCAT	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	6 cut(s)	16, 171, 276, 401, 412, 435
FatI	CATG	6 cut(s)	12, 167, 272, 397, 408, 431
FauNDI	CATATG	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	343
FokI	GGATG	1 cut(s)	303
Fsp4HI	GCNGC	1 cut(s)	343
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	1 cut(s)	343
HaeIII	GGCC	1 cut(s)	368
Hin1II	CATG	6 cut(s)	16, 171, 276, 401, 412, 435
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	2 cut(s)	284, 295
HphI	GGTGA	1 cut(s)	328
Hpy188I	TCNGA	3 cut(s)	77, 361, 390
Hpy188III	TCNNGA	1 cut(s)	288
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	2 cut(s)	173, 333
HpyCH4V	TGCA	2 cut(s)	62, 167
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 77, 380
HpySE526I	ACGT	2 cut(s)	173, 333
Hsp92II	CATG	6 cut(s)	16, 171, 276, 401, 412, 435
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	5 cut(s)	18, 82, 268, 385, 390
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	7 cut(s)	17, 224, 238, 273, 323, 352, 391
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	2 cut(s)	173, 333
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	5 cut(s)	20, 84, 270, 387, 392
MboI	GATC	5 cut(s)	18, 82, 268, 385, 390
MboII	GAAGA	2 cut(s)	232, 256
MfeI	CAATTG	2 cut(s)	180, 346
MflI	RGATCY	1 cut(s)	390
MluCI	AATT	2 cut(s)	180, 346
MnlI	CCTC	2 cut(s)	309, 358
Mph1103I	ATGCAT	1 cut(s)	169
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	2 cut(s)	166, 172
MunI	CAATTG	2 cut(s)	180, 346
MwoI	GCNNNNNNNGC	3 cut(s)	68, 77, 380
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	5 cut(s)	18, 82, 268, 385, 390
NlaIII	CATG	6 cut(s)	16, 171, 276, 401, 412, 435
NmuCI	GTSAC	1 cut(s)	334
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	3 cut(s)	16, 171, 412
PaqCI	CACCTGC	1 cut(s)	347
PciI	ACATGT	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	284, 295
PkrI	GCNGC	1 cut(s)	344
Ppu21I	YACGTR	1 cut(s)	174
PscI	ACATGT	1 cut(s)	12
PshBI	ATTAAT	1 cut(s)	89
PsiI	TTATAA	1 cut(s)	469
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	390
RsaI	GTAC	3 cut(s)	172, 210, 352
RsaNI	GTAC	3 cut(s)	171, 209, 351
RseI	CAYNNNNRTG	2 cut(s)	166, 172
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	1 cut(s)	343
Sau3AI	GATC	5 cut(s)	18, 82, 268, 385, 390
SetI	ASST	8 cut(s)	30, 68, 82, 106, 176, 217, 336, 341
SmiMI	CAYNNNNRTG	2 cut(s)	166, 172
SmlI	CTYRAG	1 cut(s)	300
SmoI	CTYRAG	1 cut(s)	300
Sse9I	AATT	2 cut(s)	180, 346
SsiI	CCGC	1 cut(s)	342
SspI	AATATT	1 cut(s)	320
SspMI	CTAG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	2 cut(s)	176, 336
TaqI	TCGA	2 cut(s)	85, 267
TasI	AATT	2 cut(s)	180, 346
TatI	WGTACW	1 cut(s)	208
TauI	GCSGC	1 cut(s)	345
TfiI	GAWTC	2 cut(s)	284, 295
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	2 cut(s)	243, 385
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	17, 26, 114
TspRI	CASTG	2 cut(s)	243, 385
VspI	ATTAAT	1 cut(s)	89
XceI	RCATGY	3 cut(s)	16, 171, 412
XspI	CTAG	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.