Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Forward (+)

38288929 .. 38291521

Gene Structure 2593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1267600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 135 bp

ATGATGAATATGTTCTTCCCTCGACTTCTTCCTCATTCTCTTTTCTTTGTAGCTTGCTTTGTAACTTTTGCCCTTGGAGCTACTCGATTGCCAAATGATGAAGCTTTTTCTTTTAGTCACAGTATAGATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

45

Amino Acids

5.0

Weight (kDa)

5.96

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	3 cut(s)	53, 80, 104
AluI	AGCT	3 cut(s)	53, 80, 104
Asp700I	GAANNNNTTC	1 cut(s)	11
BmsI	GCATC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	55
CviJI	RGCY	3 cut(s)	53, 80, 104
CviKI_1	RGCY	3 cut(s)	53, 80, 104
Eco130I	CCWWGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	73
FaiI	YATR	2 cut(s)	11, 125
FspEI	CC	7 cut(s)	32, 33, 45, 60, 85, 86, 105
HindIII	AAGCTT	1 cut(s)	102
HpyCH4III	ACNGT	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
LmnI	GCTCC	1 cut(s)	77
LweI	GCATC	1 cut(s)	118
MaeIII	GTNAC	2 cut(s)	61, 116
MboII	GAAGA	2 cut(s)	7, 20
MnlI	CCTC	2 cut(s)	30, 42
MroXI	GAANNNNTTC	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	77
NmuCI	GTSAC	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	11
SetI	ASST	3 cut(s)	55, 82, 106
SfaNI	GCATC	1 cut(s)	118
SgeI	CNNG	4 cut(s)	33, 66, 86, 96
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	122
TaqI	TCGA	2 cut(s)	22, 85
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	20, 114
XmnI	GAANNNNTTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.