Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

24535561 .. 24542498

Gene Structure 6938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG208100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGAATTACACATTCTTCTTCCCTAGGCTTCTTGTTCATTTTATCTCGCTGGTTATCTATGCAAGCTTTGCTTTCGGAGCTACTCGATTACCAGAAGATGAAGTACAAGCTTTAAGGAGCATTGGAAATAGACTGGGAAAGGGCTGGGATTTCATGGCAGATCCCTGTAGCGGAGCATCTGGATGGATTAATACTACCTCAGGCAGCGCAGCTGATAACAACGTCACCTGCGGCAATTGTAGTACTGCTGGCGATGATCAGATCTGCCATGTTACAATCATATCTCTGAAATCCCTGGATTTGGCAGGAACACTCCCACCAGAGTTGGCGAACCTCACCTATCTACAAACAATTGACCTCTCCCGCAACTATCTGAGTGGTACCATCCCTCGACAATGGGGCTCCCTGCCGCTAGTTACCATTTCCCTTGTTGGAAACCGTTTGACAGGTCCTATCCCCATTGAGATCGGAAACATTAGCACCCTGCAAAGTTTGGACATCACTTCCAATAATTTTTCAGGACTTCCTCTGGAGCTTGGGAATTTAACCAGCATAAAGAAAATGCTTCTTTCCTCAAACAATTTTACTGGGGAATTGCCCGAAACATTTGCAAGGCTTACCACATTAACGGACTTTCGGGTTGATGACAATCACTTTTCTGGGAAGATACCTGATTTCATTCAGAACTGGAAAAATCTTACAAAACTAGTAATTCAGGCTAGTGGTTTGACTGGGCCAATTCCATCCAGCATCTCTCTTTTGAAGGAATTAACTGACCTGAGAATTACTGACTTGGATGGACCTGATGAAGCACATTTTCCTCGACTTGATAATATGAAAAACCTGAAAACACTGATGTTGAGGAATTGCAATCTTACTGGAGAACTACCTACGTATCTTGCAGATCTGACAAAGTTGAAAACCTTAGACCTCAGCTTTAACAAGCTTACTGGGAAAATTCGAAGCTCCTTTGTTACAGACGGTTTGGATTACATATTCTTAACTGGAAACTTGCTGAATGGATCAGTGCCCGAACTGAAAGGGGACAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

351

Amino Acids

38.37

Weight (kDa)

5.28

Isoelectric Point (pI)

20.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	155 - 262	2.1e-09	Leucine-rich repeat region
LRR_4	PF12799	280 - 317	1.2e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	281 - 339	2.9e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	236
Acc65I	GGTACC	1 cut(s)	380
AccB1I	GGYRCC	1 cut(s)	380
AciI	CCGC	4 cut(s)	171, 231, 364, 410
AclWI	GGATC	2 cut(s)	155, 1030
AcsI	RAATTY	2 cut(s)	541, 957
AfaI	GTAC	3 cut(s)	105, 244, 382
AfiI	CCNNNNNNNGG	2 cut(s)	170, 301
AflIII	ACRYGT	1 cut(s)	1050
AgsI	TTSAA	2 cut(s)	763, 919
AhlI	ACTAGT	1 cut(s)	706
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	8 cut(s)	66, 80, 110, 212, 535, 936, 946, 966
AluI	AGCT	8 cut(s)	66, 80, 110, 212, 535, 936, 946, 966
AlwI	GGATC	2 cut(s)	155, 1030
AoxI	GGCC	1 cut(s)	734
ApeKI	GCWGC	2 cut(s)	204, 209
ApoI	RAATTY	2 cut(s)	541, 957
AseI	ATTAAT	1 cut(s)	189
Asp718I	GGTACC	1 cut(s)	380
AspA2I	CCTAGG	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	3 cut(s)	449, 734, 800
AsuHPI	GGTGA	2 cut(s)	217, 328
AsuII	TTCGAA	1 cut(s)	961
AvaII	GGWCC	2 cut(s)	449, 800
AvrII	CCTAGG	1 cut(s)	23
AxyI	CCTNAGG	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	1032
BaeI	ACNNNNGTAYC	2 cut(s)	878, 911
BanI	GGYRCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	404
BarI	GAAGNNNNNNTAC	2 cut(s)	87, 119
BbvCI	CCTCAGC	1 cut(s)	932
BbvI	GCAGC	2 cut(s)	216, 221
BccI	CCATC	4 cut(s)	177, 392, 751, 791
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BciT130I	CCWGG	1 cut(s)	296
BclI	TGATCA	1 cut(s)	256
BcuI	ACTAGT	1 cut(s)	706
BfaI	CTAG	4 cut(s)	24, 413, 707, 720
BfmI	CTRYAG	1 cut(s)	166
BfuAI	ACCTGC	1 cut(s)	236
BglII	AGATCT	2 cut(s)	261, 904
BisI	GCNGC	4 cut(s)	205, 210, 232, 410
BlnI	CCTAGG	1 cut(s)	23
BlsI	GCNGC	4 cut(s)	206, 211, 233, 411
BmcAI	AGTACT	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	2 cut(s)	449, 800
BmgT120I	GGNCC	3 cut(s)	449, 734, 800
BmiI	GGNNCC	2 cut(s)	382, 403
BmrFI	CCNGG	1 cut(s)	296
BmrI	ACTGGG	4 cut(s)	143, 597, 741, 960
BmsI	GCATC	2 cut(s)	185, 759
BmuI	ACTGGG	4 cut(s)	143, 597, 741, 960
BpmI	CTGGAG	2 cut(s)	551, 900
Bpu10I	CCTNAGC	1 cut(s)	932
Bpu14I	TTCGAA	1 cut(s)	961
BsaAI	YACGTR	1 cut(s)	894
BsaBI	GATNNNNATC	1 cut(s)	648
BsaJI	CCNNGG	2 cut(s)	23, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 301
Bse1I	ACTGG	7 cut(s)	138, 592, 692, 736, 883, 955, 1009
Bse21I	CCTNAGG	1 cut(s)	199
Bse8I	GATNNNNATC	1 cut(s)	648
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	2 cut(s)	23, 294
BseGI	GGATG	4 cut(s)	188, 384, 743, 802
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	2 cut(s)	170, 301
BseMII	CTCAG	4 cut(s)	213, 365, 770, 946
BseNI	ACTGG	7 cut(s)	138, 592, 692, 736, 883, 955, 1009
BseSI	GKGCMC	1 cut(s)	1032
BseXI	GCAGC	2 cut(s)	216, 221
BseYI	CCCAGC	1 cut(s)	144
BshFI	GGCC	1 cut(s)	736
BshNI	GGYRCC	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	170, 301
BsnI	GGCC	1 cut(s)	736
Bsp119I	TTCGAA	1 cut(s)	961
Bsp1286I	GDGCHC	2 cut(s)	404, 1032
Bsp143I	GATC	6 cut(s)	160, 256, 261, 465, 904, 1022
BspACI	CCGC	4 cut(s)	171, 231, 364, 410
BspANI	GGCC	1 cut(s)	736
BspCNI	CTCAG	4 cut(s)	212, 366, 771, 945
BspLI	GGNNCC	2 cut(s)	382, 403
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	2 cut(s)	155, 1030
BspT104I	TTCGAA	1 cut(s)	961
BspT107I	GGYRCC	1 cut(s)	380
BsrI	ACTGG	7 cut(s)	138, 592, 692, 736, 883, 955, 1009
BssECI	CCNNGG	2 cut(s)	23, 294
BssMI	GATC	6 cut(s)	160, 256, 261, 465, 904, 1022
BssT1I	CCWWGG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	2 cut(s)	440, 983
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstBAI	YACGTR	1 cut(s)	894
BstBI	TTCGAA	1 cut(s)	961
BstC8I	GCNNGC	2 cut(s)	64, 250
BstDEI	CTNAG	5 cut(s)	199, 374, 779, 925, 932
BstF5I	GGATG	4 cut(s)	188, 384, 743, 802
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	6 cut(s)	163, 259, 264, 468, 907, 1025
BstMBI	GATC	6 cut(s)	160, 256, 261, 465, 904, 1022
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 77
BstNI	CCWGG	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	1054
BstSCI	CCNGG	1 cut(s)	294
BstSFI	CTRYAG	1 cut(s)	166
BstSLI	GKGCMC	1 cut(s)	1032
BstSNI	TACGTA	1 cut(s)	894
BstV1I	GCAGC	2 cut(s)	216, 221
BstX2I	RGATCY	3 cut(s)	160, 261, 904
BstYI	RGATCY	3 cut(s)	160, 261, 904
Bsu36I	CCTNAGG	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	736
BtgZI	GCGATG	1 cut(s)	267
BtsCI	GGATG	4 cut(s)	188, 384, 743, 802
BtsIMutI	CAGTG	2 cut(s)	851, 1032
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	2 cut(s)	64, 250
CfoI	GCGC	1 cut(s)	209
Cfr13I	GGNCC	3 cut(s)	449, 734, 800
Csp6I	GTAC	3 cut(s)	104, 243, 381
CspCI	CAANNNNNGTGG	2 cut(s)	306, 341
CviAII	CATG	3 cut(s)	154, 269, 1051
CviQI	GTAC	3 cut(s)	104, 243, 381
DdeI	CTNAG	5 cut(s)	199, 374, 779, 925, 932
DpnI	GATC	6 cut(s)	162, 258, 263, 467, 906, 1024
DpnII	GATC	6 cut(s)	160, 256, 261, 465, 904, 1022
Eco105I	TACGTA	1 cut(s)	894
Eco130I	CCWWGG	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	404
Eco47I	GGWCC	2 cut(s)	449, 800
Eco81I	CCTNAGG	1 cut(s)	199
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	3 cut(s)	157, 272, 1054
FaiI	YATR	8 cut(s)	60, 155, 270, 281, 554, 836, 995, 1052
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FatI	CATG	3 cut(s)	153, 268, 1050
FauI	CCCGC	1 cut(s)	371
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	4 cut(s)	205, 210, 232, 410
FokI	GGATG	4 cut(s)	195, 371, 730, 809
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	4 cut(s)	205, 210, 232, 410
FspBI	CTAG	4 cut(s)	24, 413, 707, 720
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	4 cut(s)	205, 210, 232, 410
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	2 cut(s)	551, 900
HaeIII	GGCC	1 cut(s)	736
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	3 cut(s)	157, 272, 1054
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HindIII	AAGCTT	3 cut(s)	64, 108, 944
HphI	GGTGA	2 cut(s)	217, 328
Hpy188I	TCNGA	7 cut(s)	77, 261, 288, 375, 470, 684, 909
Hpy188III	TCNNGA	3 cut(s)	180, 519, 530
HpyAV	CCTTC	1 cut(s)	757
HpyCH4III	ACNGT	2 cut(s)	440, 983
HpyCH4IV	ACGT	2 cut(s)	222, 893
HpyCH4V	TGCA	5 cut(s)	62, 487, 611, 870, 902
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 77
HpyF3I	CTNAG	5 cut(s)	199, 374, 779, 925, 932
HpySE526I	ACGT	2 cut(s)	222, 893
Hsp92II	CATG	3 cut(s)	157, 272, 1054
HspAI	GCGC	1 cut(s)	207
KpnI	GGTACC	1 cut(s)	384
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	6 cut(s)	160, 256, 261, 465, 904, 1022
LmnI	GCTCC	6 cut(s)	77, 117, 173, 407, 532, 971
Lsp1109I	GCAGC	2 cut(s)	216, 221
LweI	GCATC	2 cut(s)	185, 759
MaeI	CTAG	4 cut(s)	24, 413, 707, 720
MaeII	ACGT	2 cut(s)	222, 893
MaeIII	GTNAC	4 cut(s)	223, 271, 415, 973
MalI	GATC	6 cut(s)	162, 258, 263, 467, 906, 1024
MboI	GATC	6 cut(s)	160, 256, 261, 465, 904, 1022
MboII	GAAGA	4 cut(s)	7, 10, 107, 676
MfeI	CAATTG	2 cut(s)	235, 351
MflI	RGATCY	3 cut(s)	160, 261, 904
MhlI	GDGCHC	2 cut(s)	404, 1032
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	9 cut(s)	208, 344, 368, 399, 537, 583, 831, 855, 941
MseI	TTAA	7 cut(s)	113, 189, 545, 626, 770, 939, 1001
MslI	CAYNNNNRTG	1 cut(s)	181
MspA1I	CMGCKG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	296
MunI	CAATTG	2 cut(s)	235, 351
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	68, 77
NdeII	GATC	6 cut(s)	160, 256, 261, 465, 904, 1022
NlaIII	CATG	3 cut(s)	157, 272, 1054
NlaIV	GGNNCC	2 cut(s)	382, 403
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	1054
NspV	TTCGAA	1 cut(s)	961
PaqCI	CACCTGC	1 cut(s)	236
PciI	ACATGT	1 cut(s)	1050
PkrI	GCNGC	4 cut(s)	206, 211, 233, 411
Ppu21I	YACGTR	1 cut(s)	894
PpuMI	RGGWCCY	1 cut(s)	449
PscI	ACATGT	1 cut(s)	1050
PshBI	ATTAAT	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	294
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	382, 403
PspPI	GGNCC	3 cut(s)	449, 734, 800
PspPPI	RGGWCCY	1 cut(s)	449
PsuI	RGATCY	3 cut(s)	160, 261, 904
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	3 cut(s)	105, 244, 382
RsaNI	GTAC	3 cut(s)	104, 243, 381
RseI	CAYNNNNRTG	1 cut(s)	181
SaqAI	TTAA	7 cut(s)	113, 189, 545, 626, 770, 939, 1001
SatI	GCNGC	4 cut(s)	205, 210, 232, 410
Sau3AI	GATC	6 cut(s)	160, 256, 261, 465, 904, 1022
Sau96I	GGNCC	3 cut(s)	449, 734, 800
ScaI	AGTACT	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	2 cut(s)	404, 1032
SfaNI	GCATC	2 cut(s)	185, 759
SfcI	CTRYAG	1 cut(s)	166
SfuI	TTCGAA	1 cut(s)	961
SinI	GGWCC	2 cut(s)	449, 800
SmiMI	CAYNNNNRTG	1 cut(s)	181
SnaBI	TACGTA	1 cut(s)	894
SpeI	ACTAGT	1 cut(s)	706
SsiI	CCGC	4 cut(s)	171, 231, 364, 410
SspMI	CTAG	4 cut(s)	24, 413, 707, 720
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	2 cut(s)	440, 983
TaiI	ACGT	2 cut(s)	225, 896
TaqI	TCGA	4 cut(s)	85, 391, 823, 961
TatI	WGTACW	2 cut(s)	103, 242
TauI	GCSGC	2 cut(s)	234, 412
Tru1I	TTAA	7 cut(s)	113, 189, 545, 626, 770, 939, 1001
Tru9I	TTAA	7 cut(s)	113, 189, 545, 626, 770, 939, 1001
TscAI	CASTG	2 cut(s)	858, 1032
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	2 cut(s)	204, 209
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	7 cut(s)	17, 26, 114, 142, 667, 822, 851
TspGWI	ACGGA	1 cut(s)	644
TspRI	CASTG	2 cut(s)	858, 1032
VpaK11BI	GGWCC	2 cut(s)	449, 800
VspI	ATTAAT	1 cut(s)	189
XapI	RAATTY	2 cut(s)	541, 957
XceI	RCATGY	1 cut(s)	1054
XmaJI	CCTAGG	1 cut(s)	23
XspI	CTAG	4 cut(s)	24, 413, 707, 720
ZrmI	AGTACT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.