Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003368.1

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Forward (+)

199406 .. 202051

Gene Structure 2646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003368.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgaacaactacatgctgttgatccatcggcttctggtgcattctctcctgctactttgctttgcagccttagctttcggagctaatcgattatcagccgatgaagtacaagcattgaaggacatagcaaaaacactggggaagacaaactggaattttagtgctgatccatgcagcggagaatatggatggattactcaagccgacaaatattttgcgaataacgtcacctgcggcaattgtacgactttcgatgcggccaatgccaccagaactgatcagatctgccatgttgttagcatacttctgagagctcagaatttgccaggaacacttccgtcagagttggcaaggcttccctatcttcaacaaattgacctcgcccgtaactatctgaatggaaccatccctcctcaatggggctccctgccactagttaacatttctcttgttggaaaccgcttgacaggttctatccccgttgagcttgcaaatattaccaccctgaaaagtttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

172

Amino Acids

18.82

Weight (kDa)

7.64

Isoelectric Point (pI)

27.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	239
AciI	CCGC	4 cut(s)	177, 234, 257, 460
AclWI	GGATC	2 cut(s)	16, 161
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	2 cut(s)	154, 319
AfaI	GTAC	2 cut(s)	108, 244
AfiI	CCNNNNNNNGG	2 cut(s)	176, 419
AgsI	TTSAA	2 cut(s)	118, 368
AhlI	ACTAGT	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	325
AloI	GAACNNNNNNTCC	2 cut(s)	394, 426
AluBI	AGCT	4 cut(s)	74, 83, 314, 487
AluI	AGCT	4 cut(s)	74, 83, 314, 487
Alw21I	GWGCWC	1 cut(s)	316
AlwI	GGATC	2 cut(s)	16, 161
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	2 cut(s)	65, 174
ApoI	RAATTY	2 cut(s)	154, 319
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AsuHPI	GGTGA	1 cut(s)	220
BanII	GRGCYC	2 cut(s)	316, 425
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	2 cut(s)	77, 186
BccI	CCATC	3 cut(s)	33, 183, 413
BciT130I	CCWGG	1 cut(s)	327
BclI	TGATCA	1 cut(s)	277
BcuI	ACTAGT	1 cut(s)	433
BfaI	CTAG	1 cut(s)	434
BfuAI	ACCTGC	1 cut(s)	239
BglII	AGATCT	1 cut(s)	282
BisI	GCNGC	4 cut(s)	66, 175, 235, 258
BlsI	GCNGC	4 cut(s)	67, 176, 236, 259
Bme1390I	CCNGG	1 cut(s)	327
BmiI	GGNNCC	2 cut(s)	403, 424
BmrFI	CCNGG	1 cut(s)	327
BmrI	ACTGGG	1 cut(s)	146
BmsI	GCATC	1 cut(s)	244
BmuI	ACTGGG	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	149
Bpu10I	CCTNAGC	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	183
Bsa29I	ATCGAT	1 cut(s)	88
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 419
Bse1I	ACTGG	2 cut(s)	141, 155
BseBI	CCWGG	1 cut(s)	327
BseCI	ATCGAT	1 cut(s)	88
BseGI	GGATG	2 cut(s)	194, 405
BseLI	CCNNNNNNNGG	2 cut(s)	176, 419
BseMII	CTCAG	2 cut(s)	299, 329
BseNI	ACTGG	2 cut(s)	141, 155
BseRI	GAGGAG	1 cut(s)	402
BseXI	GCAGC	2 cut(s)	77, 186
BshFI	GGCC	1 cut(s)	260
BshVI	ATCGAT	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	316
BslI	CCNNNNNNNGG	2 cut(s)	176, 419
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	316, 425
Bsp143I	GATC	4 cut(s)	21, 166, 277, 282
BspACI	CCGC	4 cut(s)	177, 234, 257, 460
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	2 cut(s)	300, 328
BspDI	ATCGAT	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	403, 424
BspMI	ACCTGC	1 cut(s)	239
BspPI	GGATC	2 cut(s)	16, 161
BsrI	ACTGG	2 cut(s)	141, 155
BssMI	GATC	4 cut(s)	21, 166, 277, 282
Bst2UI	CCWGG	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	3 cut(s)	70, 308, 315
BstF5I	GGATG	2 cut(s)	194, 405
BstKTI	GATC	4 cut(s)	24, 169, 280, 285
BstMBI	GATC	4 cut(s)	21, 166, 277, 282
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 71, 80, 263
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	325
BstV1I	GCAGC	2 cut(s)	77, 186
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
Bsu15I	ATCGAT	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	260
BsuTUI	ATCGAT	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	194, 405
BtsIMutI	CAGTG	1 cut(s)	134
BveI	ACCTGC	1 cut(s)	239
Cac8I	GCNNGC	1 cut(s)	489
ClaI	ATCGAT	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	107, 243
CviAII	CATG	3 cut(s)	13, 171, 290
CviQI	GTAC	2 cut(s)	107, 243
DdeI	CTNAG	3 cut(s)	70, 308, 315
DpnI	GATC	4 cut(s)	23, 168, 279, 284
DpnII	GATC	4 cut(s)	21, 166, 277, 282
EaeI	YGGCCR	1 cut(s)	258
Ecl136II	GAGCTC	1 cut(s)	314
Eco24I	GRGCYC	2 cut(s)	316, 425
Eco53kI	GAGCTC	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	325
EcoT38I	GRGCYC	2 cut(s)	316, 425
FaeI	CATG	3 cut(s)	16, 174, 293
FaiI	YATR	6 cut(s)	14, 125, 172, 186, 291, 302
FatI	CATG	3 cut(s)	12, 170, 289
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	66, 175, 235, 258
FokI	GGATG	2 cut(s)	201, 392
FriOI	GRGCYC	2 cut(s)	316, 425
Fsp4HI	GCNGC	4 cut(s)	66, 175, 235, 258
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	4 cut(s)	66, 175, 235, 258
HaeIII	GGCC	1 cut(s)	260
Hin1II	CATG	3 cut(s)	16, 174, 293
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HpaI	GTTAAC	1 cut(s)	439
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	6 cut(s)	80, 282, 309, 318, 343, 396
Hpy8I	GTNNAC	1 cut(s)	439
HpyAV	CCTTC	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	4 cut(s)	40, 65, 174, 491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 71, 80, 263
HpyF3I	CTNAG	3 cut(s)	70, 308, 315
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	16, 174, 293
Ksp22I	TGATCA	1 cut(s)	277
KspAI	GTTAAC	1 cut(s)	439
Kzo9I	GATC	4 cut(s)	21, 166, 277, 282
LmnI	GCTCC	2 cut(s)	80, 428
Lsp1109I	GCAGC	2 cut(s)	77, 186
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	226, 386
MalI	GATC	4 cut(s)	23, 168, 279, 284
MboI	GATC	4 cut(s)	21, 166, 277, 282
MboII	GAAGA	2 cut(s)	154, 356
MfeI	CAATTG	1 cut(s)	238
MflI	RGATCY	1 cut(s)	282
MhlI	GDGCHC	2 cut(s)	316, 425
MluCI	AATT	4 cut(s)	154, 238, 319, 372
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	3 cut(s)	389, 420, 423
MseI	TTAA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	327
MunI	CAATTG	1 cut(s)	238
Mva1269I	GAATGC	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	4 cut(s)	37, 71, 80, 263
NdeII	GATC	4 cut(s)	21, 166, 277, 282
NlaIII	CATG	3 cut(s)	16, 174, 293
NlaIV	GGNNCC	2 cut(s)	403, 424
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	16
PaqCI	CACCTGC	1 cut(s)	239
PctI	GAATGC	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	67, 176, 236, 259
Psp124BI	GAGCTC	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	403, 424
PsuI	RGATCY	1 cut(s)	282
RsaI	GTAC	2 cut(s)	108, 244
RsaNI	GTAC	2 cut(s)	107, 243
SacI	GAGCTC	1 cut(s)	316
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	4 cut(s)	66, 175, 235, 258
Sau3AI	GATC	4 cut(s)	21, 166, 277, 282
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	2 cut(s)	316, 425
SetI	ASST	8 cut(s)	76, 85, 228, 233, 316, 381, 472, 489
SfaNI	GCATC	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
SpeI	ACTAGT	1 cut(s)	433
Sse9I	AATT	4 cut(s)	154, 238, 319, 372
SsiI	CCGC	4 cut(s)	177, 234, 257, 460
SspI	AATATT	2 cut(s)	212, 496
SspMI	CTAG	1 cut(s)	434
SstI	GAGCTC	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	325
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	88, 252
TasI	AATT	4 cut(s)	154, 238, 319, 372
TatI	WGTACW	1 cut(s)	106
TauI	GCSGC	2 cut(s)	237, 260
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	65, 174
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	17, 117
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	141
XapI	RAATTY	2 cut(s)	154, 319
XceI	RCATGY	1 cut(s)	16
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.