Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

23294339 .. 23309228

Gene Structure 14890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG210300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGTTAAACGTTTTGGCCACCGGCCAAAATATGAGTTACAGATTCTTCTTCCCTAGGCTTCTTGTTTATTCTATCTTGCTGGTTATCTTTGCAAGCTTTGCTCTCGGAGCTACTCGATTATCAGAACATGAAGTACAAGCTTTAAAGATCATTGGAAAGACATTGGGGAAGGACCGGAATTTCATTGCAGATCCTTGTAGCAGCGAAGCATCTGGATGGATTGATACTACCTCAACAGACCCCGAAGCTAAGAATAACGTCACCTGCGGCAATTGTATTACTGCTGGCGATGATCAGATCTGCCATGTTACAAGCATATCTCTGAAAGCTCAGGATTTGGTAGGAACACTCCCACCAGAGTTGGCGAGGCTTCCCTATCTCCAAAATATTGATCTCACCCGCAATTATTTGAATGGCACCATCCCTCGAGAATGGGGCTCGCTGCCGCTAGTTAACATTTCCCTTGTTGGAAACCGTTTGACAGGTTCTATCCCCATTGAGATAGGAAACATTAGCACCCTGCAAAGTTTGGACATCACTTCCAATAATTTTTCAGGACTTCCTCTGGAGCTTGGGTATTTAACCAGCATAGACAGAATGCTTCTTTCCTCAAACAATTTTACTGGGAAGTTGCCCGAAACATTTGCAAGGCTTACCACATTAACAGACTTTCGGGTTGATGACAATCGCTTTTCTGGGAAGATACCTGATTTCATTCAGAACTGGACAAATCTTACAAAACTGAGAATTACTAACTTGGATGGACCTGAAGCACCTTTTCCTCGACTTGATAATATGACAAAACTGAAAACACTGATGTTGAGGAATTGCAATCTTATTGGAGAGCTACCTACGCTTGTGAAACTGGAAAAGTTGGACAACTTAGACCTCAGCTTTAACAAGCTTACTGGGAAAATTCCTAGCCCCTTTGTTTATAAAGATGATTCGGATTACATATTCTTAACTGGAAACTTGCTGAATGGACCAGTGCCCGAATCGCTGAAAGGAAGCAGCATTGATCTTTCATACAACAACATGACCACTAGTGAGACCGACGGTTGTGGAGGTGGCGGCAGGAACTTATTTGCAAGCTCGTCAAAGGGAAATAAGTCAGTCGTACTCTCTCCGTATAAATTGTGGTGGAAAAAAAATAACTGTTACAGAAAATATCACCGAGTCCATAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

396

Amino Acids

43.92

Weight (kDa)

8.36

Isoelectric Point (pI)

27.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	167 - 296	1.3e-10	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	936
AarI	CACCTGC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	416
AciI	CCGC	4 cut(s)	267, 400, 446, 1071
AclI	AACGTT	1 cut(s)	9
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	2 cut(s)	15, 22
AcsI	RAATTY	2 cut(s)	178, 915
AcuI	CTGAAG	1 cut(s)	789
AfaI	GTAC	2 cut(s)	135, 1119
AgsI	TTSAA	1 cut(s)	412
AhlI	ACTAGT	1 cut(s)	1043
Alw26I	GTCTC	1 cut(s)	1043
AlwI	GGATC	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	426
AoxI	GGCC	2 cut(s)	15, 22
ApeKI	GCWGC	3 cut(s)	201, 442, 1011
ApoI	RAATTY	2 cut(s)	178, 915
AspA2I	CCTAGG	1 cut(s)	53
AspS9I	GGNCC	3 cut(s)	172, 764, 983
AsuHPI	GGTGA	3 cut(s)	253, 388, 1163
AvaI	CYCGRG	1 cut(s)	426
AvaII	GGWCC	3 cut(s)	172, 764, 983
AvrII	CCTAGG	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	993
BalI	TGGCCA	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	440
BbvCI	CCTCAGC	1 cut(s)	890
BbvI	GCAGC	3 cut(s)	213, 429, 1023
BccI	CCATC	3 cut(s)	210, 428, 755
BcgI	CGANNNNNNTGC	2 cut(s)	626, 660
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	1043
BcuI	ACTAGT	1 cut(s)	1043
BfaI	CTAG	4 cut(s)	54, 449, 921, 1044
BfuAI	ACCTGC	1 cut(s)	272
BglII	AGATCT	1 cut(s)	297
BisI	GCNGC	6 cut(s)	202, 268, 443, 446, 1012, 1072
BlnI	CCTAGG	1 cut(s)	53
BlsI	GCNGC	6 cut(s)	203, 269, 444, 447, 1013, 1073
Bme18I	GGWCC	3 cut(s)	172, 764, 983
BmeT110I	CYCGRG	1 cut(s)	426
BmgT120I	GGNCC	3 cut(s)	172, 764, 983
BmiI	GGNNCC	1 cut(s)	418
BmrI	ACTGGG	2 cut(s)	633, 918
BmsI	GCATC	1 cut(s)	218
BmuI	ACTGGG	2 cut(s)	633, 918
BpmI	CTGGAG	1 cut(s)	587
Bpu10I	CCTNAGC	2 cut(s)	330, 890
BsaBI	GATNNNNATC	1 cut(s)	684
BsaI	GGTCTC	1 cut(s)	1043
BsaJI	CCNNGG	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	560, 590
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	6 cut(s)	628, 728, 870, 913, 970, 986
Bse3DI	GCAATG	1 cut(s)	183
Bse8I	GATNNNNATC	1 cut(s)	684
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	3 cut(s)	221, 420, 766
BseJI	GATNNNNATC	1 cut(s)	684
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	3 cut(s)	344, 734, 904
BseNI	ACTGG	6 cut(s)	628, 728, 870, 913, 970, 986
BseSI	GKGCMC	1 cut(s)	993
BseXI	GCAGC	3 cut(s)	213, 429, 1023
BshFI	GGCC	2 cut(s)	17, 24
BshNI	GGYRCC	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	426
BsiSI	CCGG	2 cut(s)	21, 175
BsmAI	GTCTC	1 cut(s)	1043
BsmI	GAATGC	1 cut(s)	603
BsnI	GGCC	2 cut(s)	17, 24
Bso31I	GGTCTC	1 cut(s)	1043
BsoBI	CYCGRG	1 cut(s)	426
Bsp1286I	GDGCHC	2 cut(s)	440, 993
Bsp143I	GATC	6 cut(s)	147, 190, 292, 297, 391, 1018
BspACI	CCGC	4 cut(s)	267, 400, 446, 1071
BspANI	GGCC	2 cut(s)	17, 24
BspCNI	CTCAG	3 cut(s)	343, 735, 903
BspLI	GGNNCC	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	272
BspPI	GGATC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	1043
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	6 cut(s)	628, 728, 870, 913, 970, 986
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	6 cut(s)	147, 190, 292, 297, 391, 1018
BssT1I	CCWWGG	1 cut(s)	53
Bst4CI	ACNGT	3 cut(s)	476, 1058, 1157
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	4 cut(s)	94, 286, 440, 1090
BstDEI	CTNAG	5 cut(s)	249, 330, 743, 883, 890
BstF5I	GGATG	3 cut(s)	221, 420, 766
BstKTI	GATC	6 cut(s)	150, 193, 295, 300, 394, 1021
BstMAI	GTCTC	1 cut(s)	1043
BstMBI	GATC	6 cut(s)	147, 190, 292, 297, 391, 1018
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 107, 853, 997
BstSLI	GKGCMC	1 cut(s)	993
BstV1I	GCAGC	3 cut(s)	213, 429, 1023
BstX2I	RGATCY	2 cut(s)	190, 297
BstYI	RGATCY	2 cut(s)	190, 297
BsuRI	GGCC	2 cut(s)	17, 24
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	3 cut(s)	221, 420, 766
BtsIMutI	CAGTG	2 cut(s)	812, 993
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	4 cut(s)	94, 286, 440, 1090
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	3 cut(s)	172, 764, 983
Csp6I	GTAC	2 cut(s)	134, 1118
CspCI	CAANNNNNGTGG	2 cut(s)	342, 377
CviAII	CATG	3 cut(s)	128, 305, 1036
CviQI	GTAC	2 cut(s)	134, 1118
DdeI	CTNAG	5 cut(s)	249, 330, 743, 883, 890
DpnI	GATC	6 cut(s)	149, 192, 294, 299, 393, 1020
DpnII	GATC	6 cut(s)	147, 190, 292, 297, 391, 1018
DraI	TTTAAA	1 cut(s)	144
EaeI	YGGCCR	2 cut(s)	15, 22
Eco130I	CCWWGG	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	440
Eco31I	GGTCTC	1 cut(s)	1043
Eco47I	GGWCC	3 cut(s)	172, 764, 983
Eco57I	CTGAAG	1 cut(s)	789
Eco88I	CYCGRG	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	53
EcoT38I	GRGCYC	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	3 cut(s)	131, 308, 1039
FatI	CATG	3 cut(s)	127, 304, 1035
FauI	CCCGC	1 cut(s)	407
FauNDI	CATATG	1 cut(s)	1187
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	6 cut(s)	202, 268, 443, 446, 1012, 1072
FokI	GGATG	3 cut(s)	228, 407, 773
FriOI	GRGCYC	1 cut(s)	440
Fsp4HI	GCNGC	6 cut(s)	202, 268, 443, 446, 1012, 1072
FspBI	CTAG	4 cut(s)	54, 449, 921, 1044
GluI	GCNGC	6 cut(s)	202, 268, 443, 446, 1012, 1072
GsuI	CTGGAG	1 cut(s)	587
HaeIII	GGCC	2 cut(s)	17, 24
HapII	CCGG	2 cut(s)	21, 175
Hin1II	CATG	3 cut(s)	131, 308, 1039
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HindIII	AAGCTT	3 cut(s)	94, 138, 902
HinfI	GANTC	4 cut(s)	42, 944, 995, 1176
HpaI	GTTAAC	1 cut(s)	454
HpaII	CCGG	2 cut(s)	21, 175
HphI	GGTGA	3 cut(s)	253, 388, 1163
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	6 cut(s)	107, 124, 297, 324, 720, 949
Hpy188III	TCNNGA	5 cut(s)	213, 332, 428, 555, 566
Hpy8I	GTNNAC	1 cut(s)	454
Hpy99I	CGWCG	1 cut(s)	1058
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	3 cut(s)	476, 1058, 1157
HpyCH4IV	ACGT	2 cut(s)	9, 258
HpyCH4V	TGCA	6 cut(s)	92, 188, 523, 647, 831, 1088
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 107, 853, 997
HpyF3I	CTNAG	5 cut(s)	249, 330, 743, 883, 890
HpySE526I	ACGT	2 cut(s)	9, 258
Hsp92II	CATG	3 cut(s)	131, 308, 1039
Ksp22I	TGATCA	1 cut(s)	292
KspAI	GTTAAC	1 cut(s)	454
Kzo9I	GATC	6 cut(s)	147, 190, 292, 297, 391, 1018
LmnI	GCTCC	2 cut(s)	107, 568
Lsp1109I	GCAGC	3 cut(s)	213, 429, 1023
LweI	GCATC	1 cut(s)	218
MaeI	CTAG	4 cut(s)	54, 449, 921, 1044
MaeII	ACGT	2 cut(s)	9, 258
MaeIII	GTNAC	4 cut(s)	35, 259, 307, 1157
MalI	GATC	6 cut(s)	149, 192, 294, 299, 393, 1020
MboI	GATC	6 cut(s)	147, 190, 292, 297, 391, 1018
MboII	GAAGA	3 cut(s)	37, 40, 712
MfeI	CAATTG	1 cut(s)	271
MflI	RGATCY	2 cut(s)	190, 297
MhlI	GDGCHC	2 cut(s)	440, 993
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	9 cut(s)	178, 271, 403, 547, 616, 747, 826, 915, 1133
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	1185
MmeI	TCCRAC	2 cut(s)	448, 855
MnlI	CCTC	9 cut(s)	241, 360, 435, 573, 619, 792, 816, 899, 1058
Mox20I	TGGCCA	1 cut(s)	17
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	7 cut(s)	5, 143, 453, 581, 662, 897, 962
MslI	CAYNNNNRTG	1 cut(s)	214
Msp20I	TGGCCA	1 cut(s)	17
MspI	CCGG	2 cut(s)	21, 175
MunI	CAATTG	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	603
MwoI	GCNNNNNNNGC	4 cut(s)	98, 107, 853, 997
NdeI	CATATG	1 cut(s)	1187
NdeII	GATC	6 cut(s)	147, 190, 292, 297, 391, 1018
NlaIII	CATG	3 cut(s)	131, 308, 1039
NlaIV	GGNNCC	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	426
PaqCI	CACCTGC	1 cut(s)	272
PctI	GAATGC	1 cut(s)	603
PfeI	GAWTC	3 cut(s)	42, 944, 995
PkrI	GCNGC	6 cut(s)	203, 269, 444, 447, 1013, 1073
PleI	GAGTC	1 cut(s)	1184
PpsI	GAGTC	1 cut(s)	1184
PsiI	TTATAA	1 cut(s)	936
Psp1406I	AACGTT	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	3 cut(s)	172, 764, 983
PsrI	GAACNNNNNNTAC	2 cut(s)	117, 149
PsuI	RGATCY	2 cut(s)	190, 297
RsaI	GTAC	2 cut(s)	135, 1119
RsaNI	GTAC	2 cut(s)	134, 1118
RseI	CAYNNNNRTG	1 cut(s)	214
SaqAI	TTAA	7 cut(s)	5, 143, 453, 581, 662, 897, 962
SatI	GCNGC	6 cut(s)	202, 268, 443, 446, 1012, 1072
Sau3AI	GATC	6 cut(s)	147, 190, 292, 297, 391, 1018
Sau96I	GGNCC	3 cut(s)	172, 764, 983
SchI	GAGTC	1 cut(s)	1185
SduI	GDGCHC	2 cut(s)	440, 993
SfaNI	GCATC	1 cut(s)	218
Sfr274I	CTCGAG	1 cut(s)	426
SinI	GGWCC	3 cut(s)	172, 764, 983
SlaI	CTCGAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
SpeI	ACTAGT	1 cut(s)	1043
Sse9I	AATT	9 cut(s)	178, 271, 403, 547, 616, 747, 826, 915, 1133
SsiI	CCGC	4 cut(s)	267, 400, 446, 1071
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	4 cut(s)	54, 449, 921, 1044
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	3 cut(s)	476, 1058, 1157
TaiI	ACGT	2 cut(s)	12, 261
TaqI	TCGA	3 cut(s)	115, 427, 784
TaqII	GACCGA	1 cut(s)	1067
TasI	AATT	9 cut(s)	178, 271, 403, 547, 616, 747, 826, 915, 1133
TatI	WGTACW	1 cut(s)	133
TauI	GCSGC	3 cut(s)	270, 448, 1074
TfiI	GAWTC	3 cut(s)	42, 944, 995
Tru1I	TTAA	7 cut(s)	5, 143, 453, 581, 662, 897, 962
Tru9I	TTAA	7 cut(s)	5, 143, 453, 581, 662, 897, 962
TscAI	CASTG	2 cut(s)	819, 993
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	3 cut(s)	201, 442, 1011
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	4 cut(s)	144, 172, 703, 1014
TspGWI	ACGGA	1 cut(s)	1116
TspRI	CASTG	2 cut(s)	819, 993
VpaK11BI	GGWCC	3 cut(s)	172, 764, 983
XapI	RAATTY	2 cut(s)	178, 915
XhoI	CTCGAG	1 cut(s)	426
XmaJI	CCTAGG	1 cut(s)	53
XspI	CTAG	4 cut(s)	54, 449, 921, 1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.