Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Forward (+)

70013391 .. 70016522

Gene Structure 3132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG480600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAAAGCTTTGAGAGCTCTGTAACTTGTGATTGCAGCTTCAACAACAATTCCTCTTGCCACGTAGTCAGCATAGCTTTGAAGGCACAGAATTTAACTGGTACACTGCCACCAGAATTCTCAAAGCTTCATTACCTCAAAGTATTAGATGTGAGTAGAAACCTCCTTACTGGTTCCATACCTTCTCAATGGGCAACCATGCAGTTGGAAGAACTAGGCCTTATGGGGAACAGATTGTCGGGTCCATTTCCAAAAGTCCTCACCAATATTACCACCCTCAGAAACTTGAGCATAGAAGGAAACCTTTTTTCAGGGCCCATTCCGTTGGAAATTGGAAAGTTGGTCAAGTTAGAAAAGCTCATTTTATCGTCAAATCTATTCACCGGAGAATTGCCACAAGCACTAGCAAAGTTGATCAATTTGCTTGACATGAGGATAACTGACAACAACTTCTCTGGAAAGATACCTGACTTCATTGGAAACTGGACGCAGATTTCAAAATTGCTAATTCAAGGTTGCCCTTTTGAGGGTCCTATACCTTCTAGTATATCAGCCCTAACATGCTTGATTGATCTGAGGATAACCGACTTAAAAGGTAGAGGGTCTTCTTTCCCGCCATTGAGTAAAATGGCTTCCTTGAAAACATTGGTACTGAGGAACTGCTTAATATATGGAGAGATCCCGCATTACATTGGCGATATGAAAAGATTGAAAAACCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

240

Amino Acids

26.37

Weight (kDa)

9.04

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	87 - 194	6.6e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	614, 683
AclWI	GGATC	1 cut(s)	673
AcsI	RAATTY	2 cut(s)	91, 116
AfaI	GTAC	2 cut(s)	103, 651
AfiI	CCNNNNNNNGG	2 cut(s)	526, 527
AgsI	TTSAA	6 cut(s)	43, 82, 498, 512, 640, 712
AluBI	AGCT	6 cut(s)	9, 18, 39, 77, 127, 358
AluI	AGCT	6 cut(s)	9, 18, 39, 77, 127, 358
Alw21I	GWGCWC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	673
AoxI	GGCC	2 cut(s)	217, 314
ApaI	GGGCCC	1 cut(s)	318
ApeKI	GCWGC	1 cut(s)	36
ApoI	RAATTY	2 cut(s)	91, 116
AspS9I	GGNCC	4 cut(s)	242, 314, 315, 530
AsuHPI	GGTGA	2 cut(s)	253, 373
AvaII	GGWCC	2 cut(s)	242, 530
BaeGI	GKGCMC	1 cut(s)	318
BanII	GRGCYC	2 cut(s)	20, 318
BarI	GAAGNNNNNNTAC	4 cut(s)	589, 616, 621, 648
BbsI	GAAGAC	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	48
BclI	TGATCA	1 cut(s)	414
BfaI	CTAG	3 cut(s)	215, 404, 543
BisI	GCNGC	1 cut(s)	37
BlsI	GCNGC	1 cut(s)	38
Bme18I	GGWCC	2 cut(s)	242, 530
BmgT120I	GGNCC	4 cut(s)	242, 314, 315, 530
BmiI	GGNNCC	4 cut(s)	175, 243, 316, 531
BpiI	GAAGAC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	307
BsaAI	YACGTR	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 527
Bse1I	ACTGG	3 cut(s)	103, 175, 488
BseLI	CCNNNNNNNGG	2 cut(s)	526, 527
BseMII	CTCAG	3 cut(s)	292, 566, 644
BseNI	ACTGG	3 cut(s)	103, 175, 488
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	48
BshFI	GGCC	2 cut(s)	219, 316
BsiHKAI	GWGCWC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	384
BslI	CCNNNNNNNGG	2 cut(s)	526, 527
BsnI	GGCC	2 cut(s)	219, 316
Bsp120I	GGGCCC	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	20, 318
Bsp143I	GATC	3 cut(s)	414, 571, 678
BspACI	CCGC	2 cut(s)	614, 683
BspANI	GGCC	2 cut(s)	219, 316
BspCNI	CTCAG	3 cut(s)	291, 567, 645
BspLI	GGNNCC	4 cut(s)	175, 243, 316, 531
BspPI	GGATC	1 cut(s)	673
BsrI	ACTGG	3 cut(s)	103, 175, 488
BssMI	GATC	3 cut(s)	414, 571, 678
BstBAI	YACGTR	1 cut(s)	64
BstDEI	CTNAG	3 cut(s)	278, 575, 653
BstKTI	GATC	3 cut(s)	417, 574, 681
BstMBI	GATC	3 cut(s)	414, 571, 678
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 83
BstNSI	RCATGY	1 cut(s)	564
BstSLI	GKGCMC	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	1 cut(s)	678
BstXI	CCANNNNNNTGG	2 cut(s)	205, 325
BstYI	RGATCY	1 cut(s)	678
BsuRI	GGCC	2 cut(s)	219, 316
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	104
Cfr13I	GGNCC	4 cut(s)	242, 314, 315, 530
CseI	GACGC	1 cut(s)	496
Csp6I	GTAC	2 cut(s)	102, 650
CviAII	CATG	3 cut(s)	199, 430, 561
CviQI	GTAC	2 cut(s)	102, 650
DdeI	CTNAG	3 cut(s)	278, 575, 653
DpnI	GATC	3 cut(s)	416, 573, 680
DpnII	GATC	3 cut(s)	414, 571, 678
Ecl136II	GAGCTC	1 cut(s)	18
Eco147I	AGGCCT	1 cut(s)	219
Eco24I	GRGCYC	2 cut(s)	20, 318
Eco47I	GGWCC	2 cut(s)	242, 530
Eco53kI	GAGCTC	1 cut(s)	18
EcoICRI	GAGCTC	1 cut(s)	18
EcoO109I	RGGNCCY	2 cut(s)	314, 530
EcoRI	GAATTC	1 cut(s)	116
EcoT38I	GRGCYC	2 cut(s)	20, 318
FaeI	CATG	3 cut(s)	202, 433, 564
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FatI	CATG	3 cut(s)	198, 429, 560
FauI	CCCGC	2 cut(s)	621, 690
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	1 cut(s)	37
FriOI	GRGCYC	2 cut(s)	20, 318
Fsp4HI	GCNGC	1 cut(s)	37
FspBI	CTAG	3 cut(s)	215, 404, 543
GluI	GCNGC	1 cut(s)	37
HaeIII	GGCC	2 cut(s)	219, 316
HapII	CCGG	1 cut(s)	384
HgaI	GACGC	1 cut(s)	496
Hin1II	CATG	3 cut(s)	202, 433, 564
HindIII	AAGCTT	2 cut(s)	7, 125
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	2 cut(s)	253, 373
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	281, 576
Hpy188III	TCNNGA	1 cut(s)	456
Hpy8I	GTNNAC	1 cut(s)	104
HpyAV	CCTTC	4 cut(s)	76, 192, 290, 549
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	2 cut(s)	36, 202
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 83
HpyF3I	CTNAG	3 cut(s)	278, 575, 653
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	202, 433, 564
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	3 cut(s)	414, 571, 678
LpnPI	CCDG	8 cut(s)	84, 126, 156, 297, 397, 441, 469, 480
Lsp1109I	GCAGC	1 cut(s)	48
MaeI	CTAG	3 cut(s)	215, 404, 543
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	3 cut(s)	416, 573, 680
MboI	GATC	3 cut(s)	414, 571, 678
MboII	GAAGA	2 cut(s)	221, 597
MflI	RGATCY	1 cut(s)	678
MhlI	GDGCHC	2 cut(s)	20, 318
MluCI	AATT	8 cut(s)	49, 91, 116, 330, 389, 418, 500, 507
MmeI	TCCRAC	2 cut(s)	186, 306
MseI	TTAA	3 cut(s)	95, 590, 665
MspI	CCGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	2 cut(s)	15, 83
NdeII	GATC	3 cut(s)	414, 571, 678
NlaIII	CATG	3 cut(s)	202, 433, 564
NlaIV	GGNNCC	4 cut(s)	175, 243, 316, 531
NspI	RCATGY	1 cut(s)	564
PceI	AGGCCT	1 cut(s)	219
PkrI	GCNGC	1 cut(s)	38
Ppu21I	YACGTR	1 cut(s)	64
PpuMI	RGGWCCY	1 cut(s)	530
Psp124BI	GAGCTC	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	530
PspN4I	GGNNCC	4 cut(s)	175, 243, 316, 531
PspOMI	GGGCCC	1 cut(s)	314
PspPI	GGNCC	4 cut(s)	242, 314, 315, 530
PspPPI	RGGWCCY	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	678
RsaI	GTAC	2 cut(s)	103, 651
RsaNI	GTAC	2 cut(s)	102, 650
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	3 cut(s)	95, 590, 665
SatI	GCNGC	1 cut(s)	37
Sau3AI	GATC	3 cut(s)	414, 571, 678
Sau96I	GGNCC	4 cut(s)	242, 314, 315, 530
SduI	GDGCHC	2 cut(s)	20, 318
SinI	GGWCC	2 cut(s)	242, 530
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	8 cut(s)	49, 91, 116, 330, 389, 418, 500, 507
SseBI	AGGCCT	1 cut(s)	219
SsiI	CCGC	2 cut(s)	614, 683
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	3 cut(s)	215, 404, 543
SstI	GAGCTC	1 cut(s)	20
StuI	AGGCCT	1 cut(s)	219
TaiI	ACGT	1 cut(s)	66
TasI	AATT	8 cut(s)	49, 91, 116, 330, 389, 418, 500, 507
Tru1I	TTAA	3 cut(s)	95, 590, 665
Tru9I	TTAA	3 cut(s)	95, 590, 665
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	1 cut(s)	36
TspDTI	ATGAA	4 cut(s)	17, 119, 463, 716
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	242, 530
XapI	RAATTY	2 cut(s)	91, 116
XceI	RCATGY	1 cut(s)	564
XspI	CTAG	3 cut(s)	215, 404, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.