Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

23531171 .. 23592701

Gene Structure 61531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG210800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAATTACTTGTTCTTATTCTCTCAGCTTCTTATTGGTACCCATCTCTTGCTAGTTTTCTTTGCGAGCTTTGCTTTCGGAGCTAATCAATTATCTTCAGATGAAATACAAGCTTTAAGGGACATTGGAAAGACACTCGGTAAGAACTGGAATTTCAGCGTAGATCCATGCAGCGGAGAACTTGGATGGAGTACTGCTCCGGATGGCCAATACATGAATAACGTTACCTGCGGCAACTGTAGTTCTACCTCCAATACTACGACCGATCAAATCTGCCATGTCACAAACATACTTTTGAAAGGGCAGAATCTGACGGGACAACTCCCCAAGGAGTTGATCAACCTCTCCTATCTCCAAGAAATTGACCTCACCCGCAACTTCCTGAATGGCACCATCCCTCCAGAATGGGGCACCCTTCCACTAGTTAGCATTTCTCTTGTTGGAAACCGTTTGACAGGTTCTATCCCTGTTGAGCTAGGAAACATCACCACGCTCAAAAGTTTGACAATCGATTTCAATCGTTTATCTGGAGTTCTTCCTGCGGAGCTTGGAAATTTGTCTAGCATAGAAAGAATGCTTCTTACCTCGAACAATTTTACTGGGGAGTTGCCAGAAACATTTGCAAAGCTTAACACCTTAACTGACTTTCGGATTAGTGACAGTTCCTTTTCTGGGAAGATACCTGATTTTATTCAGAGCTGGACAAATCTTGAGGGACTAGACCTTAGTTTTAACAAGCTAACTGGAGATATCCCAAACAACTTTGCTGGTCTAGGAAATCTGGATAATATGTTCTTAACTGGAAACATGCTGACCGGAACTGTGCCAGCTGATTGGATGAAAGCCAATAGCATTGATCTTTCATATAACAAATTCACCATCAACTCAAATGATGAGAATTGTGAACCACGAGATGGCTTGAACTTGTTTGCAAGCTCTTCAGGTGGCAATACTTCATTTGTTTCATGTTTACCACTTGCAAAATGTGTAAAAAGCTCAGATGAAATACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

337

Amino Acids

36.66

Weight (kDa)

4.52

Isoelectric Point (pI)

23.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	158 - 264	1.1e-06	Leucine-rich repeat region
LRR_8	PF13855	213 - 271	1.6e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	236
Acc65I	GGTACC	1 cut(s)	38
AccB1I	GGYRCC	3 cut(s)	38, 389, 410
AccB7I	CCANNNNNTGG	1 cut(s)	914
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	4 cut(s)	174, 231, 373, 542
AclI	AACGTT	1 cut(s)	222
AclWI	GGATC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	3 cut(s)	151, 553, 872
AcuI	CTGAAG	2 cut(s)	81, 924
AfaI	GTAC	2 cut(s)	40, 193
AfiI	CCNNNNNNNGG	4 cut(s)	173, 407, 672, 914
AgsI	TTSAA	3 cut(s)	298, 517, 922
AhlI	ACTAGT	1 cut(s)	421
AloI	GAACNNNNNNTCC	2 cut(s)	776, 808
AlwI	GGATC	1 cut(s)	158
AlwNI	CAGNNNCTG	1 cut(s)	310
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	3 cut(s)	151, 553, 872
Asp718I	GGTACC	1 cut(s)	38
AsuHPI	GGTGA	3 cut(s)	361, 478, 868
BaeGI	GKGCMC	1 cut(s)	413
BalI	TGGCCA	1 cut(s)	207
BanI	GGYRCC	3 cut(s)	38, 389, 410
BauI	CACGAG	1 cut(s)	909
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	6 cut(s)	51, 180, 197, 401, 887, 908
BclI	TGATCA	1 cut(s)	336
BcuI	ACTAGT	1 cut(s)	421
BfaI	CTAG	6 cut(s)	53, 422, 476, 561, 719, 773
BfmI	CTRYAG	1 cut(s)	238
BfuAI	ACCTGC	1 cut(s)	236
BisI	GCNGC	2 cut(s)	172, 232
BlsI	GCNGC	2 cut(s)	173, 233
BmcAI	AGTACT	1 cut(s)	193
BmiI	GGNNCC	3 cut(s)	40, 391, 412
BmrI	ACTGGG	1 cut(s)	609
BmuI	ACTGGG	1 cut(s)	609
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BpmI	CTGGAG	3 cut(s)	384, 549, 765
BpuEI	CTTGAG	1 cut(s)	731
Bsa29I	ATCGAT	1 cut(s)	510
BsaBI	GATNNNNATC	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	327
BsaWI	WCCGGW	2 cut(s)	199, 815
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	4 cut(s)	173, 407, 672, 914
Bse1I	ACTGG	4 cut(s)	152, 604, 748, 805
Bse8I	GATNNNNATC	1 cut(s)	516
BseAI	TCCGGA	1 cut(s)	199
BseCI	ATCGAT	1 cut(s)	510
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	4 cut(s)	191, 208, 393, 843
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	4 cut(s)	173, 407, 672, 914
BseMII	CTCAG	2 cut(s)	38, 1011
BseNI	ACTGG	4 cut(s)	152, 604, 748, 805
BseSI	GKGCMC	1 cut(s)	413
BseXI	GCAGC	1 cut(s)	183
Bsh1285I	CGRYCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	207
BshNI	GGYRCC	3 cut(s)	38, 389, 410
BshVI	ATCGAT	1 cut(s)	510
BsiEI	CGRYCG	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	200, 816
BslFI	GGGAC	3 cut(s)	134, 330, 729
BslI	CCNNNNNNNGG	4 cut(s)	173, 407, 672, 914
BsmFI	GGGAC	3 cut(s)	134, 330, 729
BsmI	GAATGC	1 cut(s)	579
BsnI	GGCC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	4 cut(s)	163, 265, 336, 856
BspACI	CCGC	4 cut(s)	174, 231, 373, 542
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	2 cut(s)	37, 1010
BspDI	ATCGAT	1 cut(s)	510
BspEI	TCCGGA	1 cut(s)	199
BspLI	GGNNCC	3 cut(s)	40, 391, 412
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	1 cut(s)	158
BspQI	GCTCTTC	1 cut(s)	943
BspT107I	GGYRCC	3 cut(s)	38, 389, 410
BsrI	ACTGG	4 cut(s)	152, 604, 748, 805
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	4 cut(s)	163, 265, 336, 856
BssSI	CACGAG	1 cut(s)	909
BssT1I	CCWWGG	1 cut(s)	327
Bst2BI	CACGAG	1 cut(s)	909
Bst4CI	ACNGT	5 cut(s)	239, 449, 662, 823, 1011
Bst6I	CTCTTC	1 cut(s)	943
BstC8I	GCNNGC	3 cut(s)	67, 828, 934
BstDEI	CTNAG	3 cut(s)	24, 725, 997
BstF5I	GGATG	4 cut(s)	191, 208, 393, 843
BstKTI	GATC	4 cut(s)	166, 268, 339, 859
BstMBI	GATC	4 cut(s)	163, 265, 336, 856
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 80
BstNSI	RCATGY	1 cut(s)	811
BstSFI	CTRYAG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	413
BstV1I	GCAGC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	163
BstXI	CCANNNNNNTGG	1 cut(s)	834
BstYI	RGATCY	1 cut(s)	163
Bsu15I	ATCGAT	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	207
BsuTUI	ATCGAT	1 cut(s)	510
BtsCI	GGATG	4 cut(s)	191, 208, 393, 843
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	3 cut(s)	67, 828, 934
CaiI	CAGNNNCTG	1 cut(s)	310
ClaI	ATCGAT	1 cut(s)	510
Csp6I	GTAC	2 cut(s)	39, 192
CviAII	CATG	5 cut(s)	168, 214, 278, 808, 966
CviQI	GTAC	2 cut(s)	39, 192
DdeI	CTNAG	3 cut(s)	24, 725, 997
DpnI	GATC	4 cut(s)	165, 267, 338, 858
DpnII	GATC	4 cut(s)	163, 265, 336, 856
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	943
EarI	CTCTTC	1 cut(s)	943
Eco130I	CCWWGG	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	751
Eco57I	CTGAAG	2 cut(s)	81, 924
EcoRV	GATATC	1 cut(s)	751
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	5 cut(s)	171, 217, 281, 811, 969
FaqI	GGGAC	3 cut(s)	134, 330, 729
FatI	CATG	5 cut(s)	167, 213, 277, 807, 965
FauI	CCCGC	1 cut(s)	380
FbaI	TGATCA	1 cut(s)	336
Fnu4HI	GCNGC	2 cut(s)	172, 232
FokI	GGATG	4 cut(s)	198, 215, 380, 850
Fsp4HI	GCNGC	2 cut(s)	172, 232
FspBI	CTAG	6 cut(s)	53, 422, 476, 561, 719, 773
GluI	GCNGC	2 cut(s)	172, 232
GsuI	CTGGAG	3 cut(s)	384, 549, 765
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	2 cut(s)	200, 816
Hin1II	CATG	5 cut(s)	171, 217, 281, 811, 969
HindIII	AAGCTT	2 cut(s)	111, 626
HinfI	GANTC	1 cut(s)	307
HpaII	CCGG	2 cut(s)	200, 816
HphI	GGTGA	3 cut(s)	361, 478, 868
Hpy166II	GTNNAC	2 cut(s)	905, 971
Hpy188I	TCNGA	6 cut(s)	80, 100, 312, 651, 696, 1000
Hpy188III	TCNNGA	6 cut(s)	200, 382, 401, 528, 710, 782
Hpy8I	GTNNAC	2 cut(s)	905, 971
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	5 cut(s)	239, 449, 662, 823, 1011
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	4 cut(s)	171, 623, 932, 980
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 80
HpyF3I	CTNAG	3 cut(s)	24, 725, 997
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	5 cut(s)	171, 217, 281, 811, 969
Kpn2I	TCCGGA	1 cut(s)	199
KpnI	GGTACC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	336
Kzo9I	GATC	4 cut(s)	163, 265, 336, 856
LguI	GCTCTTC	1 cut(s)	943
LmnI	GCTCC	3 cut(s)	80, 202, 544
Lsp1109I	GCAGC	1 cut(s)	183
MaeI	CTAG	6 cut(s)	53, 422, 476, 561, 719, 773
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	3 cut(s)	223, 280, 656
MalI	GATC	4 cut(s)	165, 267, 338, 858
MboI	GATC	4 cut(s)	163, 265, 336, 856
MboII	GAAGA	4 cut(s)	87, 527, 688, 930
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	413
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	8 cut(s)	4, 89, 151, 360, 553, 592, 872, 898
MluNI	TGGCCA	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	421
MnlI	CCTC	6 cut(s)	259, 353, 377, 408, 595, 706
Mox20I	TGGCCA	1 cut(s)	207
MroI	TCCGGA	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	5 cut(s)	116, 630, 638, 732, 797
Msp20I	TGGCCA	1 cut(s)	207
MspA1I	CMGCKG	2 cut(s)	174, 830
MspI	CCGG	2 cut(s)	200, 816
Mva1269I	GAATGC	1 cut(s)	579
MwoI	GCNNNNNNNGC	2 cut(s)	71, 80
NdeII	GATC	4 cut(s)	163, 265, 336, 856
NlaIII	CATG	5 cut(s)	171, 217, 281, 811, 969
NlaIV	GGNNCC	3 cut(s)	40, 391, 412
NmuCI	GTSAC	2 cut(s)	280, 656
NspI	RCATGY	1 cut(s)	811
PciSI	GCTCTTC	1 cut(s)	943
PctI	GAATGC	1 cut(s)	579
PfeI	GAWTC	1 cut(s)	307
PflMI	CCANNNNNTGG	1 cut(s)	914
PkrI	GCNGC	2 cut(s)	173, 233
Psp1406I	AACGTT	1 cut(s)	222
PspN4I	GGNNCC	3 cut(s)	40, 391, 412
PstNI	CAGNNNCTG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	830
RsaI	GTAC	2 cut(s)	40, 193
RsaNI	GTAC	2 cut(s)	39, 192
SapI	GCTCTTC	1 cut(s)	943
SaqAI	TTAA	5 cut(s)	116, 630, 638, 732, 797
SatI	GCNGC	2 cut(s)	172, 232
Sau3AI	GATC	4 cut(s)	163, 265, 336, 856
ScaI	AGTACT	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	413
SfcI	CTRYAG	1 cut(s)	238
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
SpeI	ACTAGT	1 cut(s)	421
Sse9I	AATT	8 cut(s)	4, 89, 151, 360, 553, 592, 872, 898
SsiI	CCGC	4 cut(s)	174, 231, 373, 542
SspMI	CTAG	6 cut(s)	53, 422, 476, 561, 719, 773
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	5 cut(s)	239, 449, 662, 823, 1011
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	510, 587
TaqII	GACCGA	1 cut(s)	278
TasI	AATT	8 cut(s)	4, 89, 151, 360, 553, 592, 872, 898
TatI	WGTACW	1 cut(s)	191
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	5 cut(s)	116, 630, 638, 732, 797
Tru9I	TTAA	5 cut(s)	116, 630, 638, 732, 797
TseFI	GTSAC	2 cut(s)	280, 656
TseI	GCWGC	1 cut(s)	171
Tsp45I	GTSAC	2 cut(s)	280, 656
TspDTI	ATGAA	7 cut(s)	17, 117, 230, 852, 854, 945, 954
Van91I	CCANNNNNTGG	1 cut(s)	914
XapI	RAATTY	3 cut(s)	151, 553, 872
XceI	RCATGY	1 cut(s)	811
XspI	CTAG	6 cut(s)	53, 422, 476, 561, 719, 773
ZrmI	AGTACT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.