Rh5CG230800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002057
Physical Location & Seq
Reverse (-)
23947079 .. 23957211
10133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG230800.1

Sequence Viewer

Length: 330 bp
ATGAAAATGAATTACACATTCTTCTTCCCTCGGCTTCTTCTTGCTCTGTCTCTCCTGCTAGTTTGCTCTGCAACTTTTGCTTTCGGAGCCACTCGATTACCAGAAGATGAAGTTGAAGCTTTGAAGGACATAGCAAAGACGCTGGGGAAGACGAACTGGAATTTCAGCGCTGATCCCTGTGGCAACGATTACGGGTGGGCTAATCTGAACCCGGTAAAAGGATCCGAAGATGCCGTCACCTGCAATTGTACCTTAGTTCCCAATTCCACTGTCTGCCACGTCACCAGCATTGAAGGAATGTTCACAGAAGTAGGTTCTTTTATAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.86

Weight (kDa)

4.72

Isoelectric Point (pI)

27.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 248
Acc36I ACCTGC 1 cut(s) 248
AclWI GGATC 3 cut(s) 167, 216, 229
AcsI RAATTY 1 cut(s) 160
AfaI GTAC 1 cut(s) 250
AfeI AGCGCT 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 3 cut(s) 116, 124, 293
AjiI CACGTC 1 cut(s) 280
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 3 cut(s) 167, 216, 229
Aor51HI AGCGCT 1 cut(s) 169
ApoI RAATTY 1 cut(s) 160
ArsI GACNNNNNNTTYG 2 cut(s) 219, 251
AspLEI GCGC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 229, 274
BamHI GGATCC 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 218
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 1 cut(s) 59
BfoI RGCGCY 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 248
Bme1390I CCNGG 1 cut(s) 212
BmgBI CACGTC 1 cut(s) 280
BmiI GGNNCC 2 cut(s) 88, 223
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 161
BseYI CCCAGC 1 cut(s) 142
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 54
Bsp143I GATC 2 cut(s) 172, 221
BspLI GGNNCC 2 cut(s) 88, 223
BspMI ACCTGC 1 cut(s) 248
BspPI GGATC 3 cut(s) 167, 216, 229
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 2 cut(s) 172, 221
Bst4CI ACNGT 1 cut(s) 271
BstAPI GCANNNNNTGC 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 2 cut(s) 175, 224
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 2 cut(s) 172, 221
BstMWI GCNNNNNNNGC 2 cut(s) 77, 86
BstSCI CCNGG 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BtrI CACGTC 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 267
BveI ACCTGC 1 cut(s) 248
CfoI GCGC 1 cut(s) 170
CseI GACGC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 249
CviJI RGCY 4 cut(s) 34, 89, 119, 200
CviKI_1 RGCY 4 cut(s) 34, 89, 119, 200
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 1 cut(s) 253
DpnI GATC 2 cut(s) 174, 223
DpnII GATC 2 cut(s) 172, 221
Eco47III AGCGCT 1 cut(s) 169
FaiI YATR 3 cut(s) 131, 323, 328
FspBI CTAG 1 cut(s) 59
GlaI GCGC 1 cut(s) 169
GsaI CCCAGC 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 171
HapII CCGG 1 cut(s) 212
HgaI GACGC 1 cut(s) 148
HhaI GCGC 1 cut(s) 170
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HindIII AAGCTT 1 cut(s) 117
HpaII CCGG 1 cut(s) 212
HphI GGTGA 2 cut(s) 229, 274
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 3 cut(s) 86, 207, 226
Hpy8I GTNNAC 1 cut(s) 303
HpyAV CCTTC 2 cut(s) 118, 287
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 71, 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 86
HpyF3I CTNAG 1 cut(s) 253
HpySE526I ACGT 1 cut(s) 279
HspAI GCGC 1 cut(s) 168
Kzo9I GATC 2 cut(s) 172, 221
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 8 cut(s) 68, 114, 128, 142, 190, 225, 253, 298
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 59
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 2 cut(s) 235, 280
MalI GATC 2 cut(s) 174, 223
MboI GATC 2 cut(s) 172, 221
MboII GAAGA 6 cut(s) 13, 16, 29, 116, 160, 239
MfeI CAATTG 1 cut(s) 244
MflI RGATCY 1 cut(s) 221
MluCI AATT 4 cut(s) 10, 160, 244, 262
MnlI CCTC 1 cut(s) 39
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 212
MunI CAATTG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 77, 86
NciI CCSGG 1 cut(s) 212
NdeII GATC 2 cut(s) 172, 221
NlaIV GGNNCC 2 cut(s) 88, 223
NmeAIII GCCGAG 1 cut(s) 10
NmuCI GTSAC 2 cut(s) 235, 280
PaqCI CACCTGC 1 cut(s) 248
PspFI CCCAGC 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 88, 223
PsuI RGATCY 1 cut(s) 221
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
Sau3AI GATC 2 cut(s) 172, 221
ScrFI CCNGG 1 cut(s) 212
SetI ASST 5 cut(s) 121, 242, 254, 282, 316
SfaNI GCATC 1 cut(s) 220
Sse9I AATT 4 cut(s) 10, 160, 244, 262
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 94
TasI AATT 4 cut(s) 10, 160, 244, 262
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 2 cut(s) 235, 280
Tsp45I GTSAC 2 cut(s) 235, 280
TspDTI ATGAA 3 cut(s) 17, 23, 123
TspRI CASTG 1 cut(s) 274
XapI RAATTY 1 cut(s) 160
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.