Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Forward (+)

26549659 .. 26550446

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g23570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGATGAATATGTTCTTCCCTCGACTTCTTCCTCATTCTCTTTTCTTTGTAGCTTGCTTTGTAACTTTTGCCTTTGGAGCTACTCGATTGCCAAATGATGAAGTGCAAACTTTGGAAGCCATAGCAAAGACATTGGGGAAGAAGGACTGGGATTTCAGTGGAAATTGGACCATGATCCATGCAGCGGCCAACTTCCATGGACTAATTCAAGCGCAGCCGAAGGATTTGAGAATGCCATCAACTGTACTTGCTCCGACAAAAACTCCACTGTCTGCCATATTACCAGCATGTAAACCTCTCTCTCTCTCTCTCAAAAACAAACATTTAATATATTATTATATTAAAAAAAAAATTCGTTTTATTTATTTATTTATGACCCCACGTCTATTTGCTATAAGTATCAATCAAATTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

139

Amino Acids

15.8

Weight (kDa)

9.96

Isoelectric Point (pI)

28.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	1 cut(s)	169
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	2 cut(s)	351, 408
AfaI	GTAC	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	209
AhdI	GACNNNNNGTC	1 cut(s)	381
AjiI	CACGTC	1 cut(s)	383
AluBI	AGCT	2 cut(s)	53, 80
AluI	AGCT	2 cut(s)	53, 80
AlwI	GGATC	1 cut(s)	169
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	182, 214
ApoI	RAATTY	2 cut(s)	351, 408
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	194, 226
BccI	CCATC	1 cut(s)	244
BisI	GCNGC	3 cut(s)	183, 186, 215
BlsI	GCNGC	3 cut(s)	184, 187, 216
Bme18I	GGWCC	1 cut(s)	168
BmeRI	GACNNNNNGTC	1 cut(s)	381
BmgBI	CACGTC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	168
BmrI	ACTGGG	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	194, 226
BshFI	GGCC	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	174
Bsp19I	CCATGG	1 cut(s)	196
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	196
Bst4CI	ACNGT	2 cut(s)	244, 270
BstC8I	GCNNGC	1 cut(s)	55
BstDSI	CCRYGG	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	194, 226
BsuRI	GGCC	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	196
BtrI	CACGTC	1 cut(s)	383
BtsIMutI	CAGTG	2 cut(s)	163, 266
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	4 cut(s)	172, 179, 197, 288
CviJI	RGCY	5 cut(s)	53, 80, 119, 188, 217
CviKI_1	RGCY	5 cut(s)	53, 80, 119, 188, 217
CviQI	GTAC	1 cut(s)	245
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
DriI	GACNNNNNGTC	1 cut(s)	381
EaeI	YGGCCR	1 cut(s)	186
Eam1105I	GACNNNNNGTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	196
FaeI	CATG	4 cut(s)	175, 182, 200, 291
FatI	CATG	4 cut(s)	171, 178, 196, 287
Fnu4HI	GCNGC	3 cut(s)	183, 186, 215
Fsp4HI	GCNGC	3 cut(s)	183, 186, 215
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	3 cut(s)	183, 186, 215
HaeIII	GGCC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	4 cut(s)	175, 182, 200, 291
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	1 cut(s)	255
Hpy8I	GTNNAC	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	136, 214
HpyCH4III	ACNGT	2 cut(s)	244, 270
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	2 cut(s)	106, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	4 cut(s)	175, 182, 200, 291
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	2 cut(s)	77, 256
LpnPI	CCDG	2 cut(s)	133, 297
Lsp1109I	GCAGC	2 cut(s)	194, 226
MaeII	ACGT	1 cut(s)	382
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	3 cut(s)	7, 20, 151
MluCI	AATT	4 cut(s)	163, 204, 351, 408
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	3 cut(s)	30, 42, 306
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	2 cut(s)	326, 342
MspA1I	CMGCKG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	77
NcoI	CCATGG	1 cut(s)	196
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	4 cut(s)	175, 182, 200, 291
NspI	RCATGY	1 cut(s)	291
PctI	GAATGC	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	11
PkrI	GCNGC	3 cut(s)	184, 187, 216
PspPI	GGNCC	1 cut(s)	168
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	326, 342
SatI	GCNGC	3 cut(s)	183, 186, 215
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	168
SetI	ASST	4 cut(s)	55, 82, 298, 385
SinI	GGWCC	1 cut(s)	168
Sse9I	AATT	4 cut(s)	163, 204, 351, 408
SsiI	CCGC	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	2 cut(s)	244, 270
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	2 cut(s)	22, 85
TasI	AATT	4 cut(s)	163, 204, 351, 408
TatI	WGTACW	1 cut(s)	244
TauI	GCSGC	1 cut(s)	188
Tru1I	TTAA	2 cut(s)	326, 342
Tru9I	TTAA	2 cut(s)	326, 342
TscAI	CASTG	2 cut(s)	163, 273
TseI	GCWGC	2 cut(s)	182, 214
TspDTI	ATGAA	2 cut(s)	20, 114
TspRI	CASTG	2 cut(s)	163, 273
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	2 cut(s)	351, 408
XceI	RCATGY	1 cut(s)	291
XmnI	GAANNNNTTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.