Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Forward (+)

70531584 .. 70534357

Gene Structure 2774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAAGCGCAGACTTTTGAAATCTCAGAATTTGCCGGGAAAACTCCCGCCAGAGTTGATCAGGCTCCCCTATCTCCAAGAAATCGACCTCACCCGCAACTACCTGAGTGGCAATATCCCTCCAAAATGGGGCTCCCTGCCACTAGTTCACATTGGTCTTGGTGCAAACCGTTTGACAGGTTCTATCCCTGTTGAGCTAGGAAACATCACCACGCTCGAAAGTCTGAGCATCGATTTCAATAGTTTCTCTGGAGTTCTTCCTGCGGAGCTTGGAAATTTGTCTAGCATAAAAAAAATGTCTCTTACCTCGAACAATTTTACCGGGGAGTTGCCAGAGACATTTGCAAAGCTTACCGACTTAACTGACTTTTGGATTAGTGACAGTTCCTTTTCTGGGAAGATACCTGATTTTATTAAGAGATGGACAAATCTTGAGACACTAGTGATTCAGGCTAGTGGTTTTACAGGGCCAATTCCTTCCGGCATTTCTCTCCTGACAAGATTAAAAGACCTGAGAATTACTGACTTGAATGGATCTGAATCATCCTTTCCTGTACTTGATAATATGACAAACCTGGAGACATTGGTGTTGCGGAACTGCAATATTAGTGGGCGGCTACCTGAATATCTTGGGAACTTGGCGACTTTGAATATTTTAGACCTTAGTTTCAATAAGCTAACTGGAGATATCCCAAACAGCTTTGCTGGTCTAGGTCTGAAGAACATGTTCTTAACTGGAAACATGCTGACCGGAACTGTGCCAGCTGATTGGATGACAGCTGATTGGATTGATCTTTCATATAACAAATTCACCATGGACTCAAGTGATGAGGAGTGTGAACCACAAGAGGGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

285

Amino Acids

31.36

Weight (kDa)

4.8

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	85 - 174	6.5e-06	Leucine-rich repeat region
LRR_ComC	PF24141	176 - 236	4e-06	EGF-like domain-containing protein ComC LRR domain
LRR_8	PF13855	190 - 249	6e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	47, 94, 263, 592, 613
AclWI	GGATC	1 cut(s)	541
AcsI	RAATTY	3 cut(s)	28, 274, 806
AcuI	CTGAAG	1 cut(s)	737
AfaI	GTAC	1 cut(s)	555
AfiI	CCNNNNNNNGG	3 cut(s)	128, 393, 848
AflIII	ACRYGT	1 cut(s)	723
AgsI	TTSAA	5 cut(s)	19, 238, 529, 649, 670
AhlI	ACTAGT	2 cut(s)	142, 439
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	7 cut(s)	196, 268, 349, 676, 699, 764, 779
AluI	AGCT	7 cut(s)	196, 268, 349, 676, 699, 764, 779
Alw26I	GTCTC	4 cut(s)	303, 329, 428, 572
AlwI	GGATC	1 cut(s)	541
AoxI	GGCC	1 cut(s)	467
ApoI	RAATTY	3 cut(s)	28, 274, 806
Asp700I	GAANNNNTTC	1 cut(s)	725
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	467
AsuC2I	CCSGG	2 cut(s)	36, 322
AsuHPI	GGTGA	3 cut(s)	82, 199, 802
BanII	GRGCYC	1 cut(s)	134
BccI	CCATC	1 cut(s)	414
BciT130I	CCWGG	1 cut(s)	575
BclI	TGATCA	1 cut(s)	57
BcnI	CCSGG	2 cut(s)	36, 322
BcoDI	GTCTC	4 cut(s)	303, 329, 428, 572
BcuI	ACTAGT	2 cut(s)	142, 439
BfaI	CTAG	6 cut(s)	143, 197, 282, 440, 453, 710
BisI	GCNGC	1 cut(s)	614
BlsI	GCNGC	1 cut(s)	615
Bme1390I	CCNGG	3 cut(s)	36, 322, 575
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	2 cut(s)	65, 133
BmrFI	CCNGG	3 cut(s)	36, 322, 575
BmsI	GCATC	1 cut(s)	237
BpmI	CTGGAG	3 cut(s)	270, 596, 702
BpuEI	CTTGAG	2 cut(s)	452, 805
BpuMI	CCSGG	2 cut(s)	36, 322
Bsa29I	ATCGAT	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	538
BsaJI	CCNNGG	2 cut(s)	321, 813
BsaWI	WCCGGW	1 cut(s)	749
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 393, 848
Bse1I	ACTGG	2 cut(s)	685, 739
Bse8I	GATNNNNATC	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	575
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	321, 813
BseGI	GGATG	2 cut(s)	542, 777
BseJI	GATNNNNATC	1 cut(s)	538
BseLI	CCNNNNNNNGG	3 cut(s)	128, 393, 848
BseMII	CTCAG	4 cut(s)	38, 95, 215, 503
BseNI	ACTGG	2 cut(s)	685, 739
BseRI	GAGGAG	1 cut(s)	845
BshFI	GGCC	1 cut(s)	469
BshVI	ATCGAT	1 cut(s)	231
BsiSI	CCGG	4 cut(s)	35, 321, 480, 750
BslI	CCNNNNNNNGG	3 cut(s)	128, 393, 848
BsmAI	GTCTC	4 cut(s)	303, 329, 428, 572
BsnI	GGCC	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	57, 533, 790
Bsp19I	CCATGG	1 cut(s)	813
BspACI	CCGC	5 cut(s)	47, 94, 263, 592, 613
BspANI	GGCC	1 cut(s)	469
BspCNI	CTCAG	4 cut(s)	37, 96, 216, 504
BspDI	ATCGAT	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	65, 133
BspPI	GGATC	1 cut(s)	541
BsrI	ACTGG	2 cut(s)	685, 739
BssECI	CCNNGG	2 cut(s)	321, 813
BssMI	GATC	3 cut(s)	57, 533, 790
BssT1I	CCWWGG	1 cut(s)	813
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	3 cut(s)	170, 383, 757
BstC8I	GCNNGC	1 cut(s)	762
BstDEI	CTNAG	5 cut(s)	24, 104, 224, 512, 662
BstDSI	CCRYGG	1 cut(s)	813
BstF5I	GGATG	2 cut(s)	542, 777
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	3 cut(s)	60, 536, 793
BstMAI	GTCTC	4 cut(s)	303, 329, 428, 572
BstMBI	GATC	3 cut(s)	57, 533, 790
BstNI	CCWGG	1 cut(s)	575
BstNSI	RCATGY	2 cut(s)	727, 745
BstSCI	CCNGG	3 cut(s)	34, 320, 573
BstX2I	RGATCY	1 cut(s)	533
BstXI	CCANNNNNNTGG	1 cut(s)	768
BstYI	RGATCY	1 cut(s)	533
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	469
BsuTUI	ATCGAT	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	813
BtsCI	GGATG	2 cut(s)	542, 777
Cac8I	GCNNGC	1 cut(s)	762
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	467
ClaI	ATCGAT	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	554
CspCI	CAANNNNNGTGG	2 cut(s)	589, 624
CviAII	CATG	3 cut(s)	724, 742, 814
CviQI	GTAC	1 cut(s)	554
DdeI	CTNAG	5 cut(s)	24, 104, 224, 512, 662
DpnI	GATC	3 cut(s)	59, 535, 792
DpnII	GATC	3 cut(s)	57, 533, 790
Eco130I	CCWWGG	1 cut(s)	813
Eco24I	GRGCYC	1 cut(s)	134
Eco32I	GATATC	1 cut(s)	688
Eco57I	CTGAAG	1 cut(s)	737
EcoRII	CCWGG	1 cut(s)	573
EcoRV	GATATC	1 cut(s)	688
EcoT14I	CCWWGG	1 cut(s)	813
EcoT38I	GRGCYC	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	813
FaeI	CATG	3 cut(s)	727, 745, 817
FaiI	YATR	7 cut(s)	287, 566, 725, 743, 799, 801, 815
FatI	CATG	3 cut(s)	723, 741, 813
FauI	CCCGC	2 cut(s)	54, 101
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	614
FokI	GGATG	2 cut(s)	529, 784
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	614
FspBI	CTAG	6 cut(s)	143, 197, 282, 440, 453, 710
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	1 cut(s)	614
GsuI	CTGGAG	3 cut(s)	270, 596, 702
HaeIII	GGCC	1 cut(s)	469
HapII	CCGG	4 cut(s)	35, 321, 480, 750
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	727, 745, 817
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	3 cut(s)	445, 539, 818
HpaII	CCGG	4 cut(s)	35, 321, 480, 750
HphI	GGTGA	3 cut(s)	82, 199, 802
Hpy166II	GTNNAC	2 cut(s)	148, 839
Hpy188I	TCNGA	4 cut(s)	27, 225, 538, 717
Hpy188III	TCNNGA	3 cut(s)	249, 431, 493
Hpy8I	GTNNAC	2 cut(s)	148, 839
HpyAV	CCTTC	1 cut(s)	486
HpyCH4III	ACNGT	3 cut(s)	170, 383, 757
HpyCH4V	TGCA	3 cut(s)	164, 344, 600
HpyF3I	CTNAG	5 cut(s)	24, 104, 224, 512, 662
Hsp92II	CATG	3 cut(s)	727, 745, 817
HspAI	GCGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	57, 533, 790
LmnI	GCTCC	3 cut(s)	69, 137, 265
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	6 cut(s)	143, 197, 282, 440, 453, 710
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	3 cut(s)	59, 535, 792
MboI	GATC	3 cut(s)	57, 533, 790
MboII	GAAGA	3 cut(s)	248, 409, 730
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	6 cut(s)	28, 274, 313, 471, 516, 806
MlyI	GAGTC	1 cut(s)	812
MnlI	CCTC	5 cut(s)	98, 129, 316, 823, 841
MroXI	GAANNNNTTC	1 cut(s)	725
MseI	TTAA	4 cut(s)	359, 414, 503, 731
MspA1I	CMGCKG	2 cut(s)	764, 779
MspI	CCGG	4 cut(s)	35, 321, 480, 750
MspR9I	CCNGG	3 cut(s)	36, 322, 575
MvaI	CCWGG	1 cut(s)	575
NciI	CCSGG	2 cut(s)	36, 322
NcoI	CCATGG	1 cut(s)	813
NdeII	GATC	3 cut(s)	57, 533, 790
NlaIII	CATG	3 cut(s)	727, 745, 817
NlaIV	GGNNCC	2 cut(s)	65, 133
NmuCI	GTSAC	1 cut(s)	377
NspI	RCATGY	2 cut(s)	727, 745
PciI	ACATGT	1 cut(s)	723
PdmI	GAANNNNTTC	1 cut(s)	725
PfeI	GAWTC	2 cut(s)	445, 539
PkrI	GCNGC	1 cut(s)	615
PleI	GAGTC	1 cut(s)	812
PpsI	GAGTC	1 cut(s)	812
PscI	ACATGT	1 cut(s)	723
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	2 cut(s)	65, 133
PspPI	GGNCC	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	533
PvuII	CAGCTG	2 cut(s)	764, 779
RsaI	GTAC	1 cut(s)	555
RsaNI	GTAC	1 cut(s)	554
SaqAI	TTAA	4 cut(s)	359, 414, 503, 731
SatI	GCNGC	1 cut(s)	614
Sau3AI	GATC	3 cut(s)	57, 533, 790
Sau96I	GGNCC	1 cut(s)	467
SchI	GAGTC	1 cut(s)	812
ScrFI	CCNGG	3 cut(s)	36, 322, 575
SduI	GDGCHC	1 cut(s)	134
SfaNI	GCATC	1 cut(s)	237
SmlI	CTYRAG	2 cut(s)	431, 820
SmoI	CTYRAG	2 cut(s)	431, 820
SpeI	ACTAGT	2 cut(s)	142, 439
Sse9I	AATT	6 cut(s)	28, 274, 313, 471, 516, 806
SsiI	CCGC	5 cut(s)	47, 94, 263, 592, 613
SspI	AATATT	2 cut(s)	604, 652
SspMI	CTAG	6 cut(s)	143, 197, 282, 440, 453, 710
StyD4I	CCNGG	3 cut(s)	34, 320, 573
StyI	CCWWGG	1 cut(s)	813
TaaI	ACNGT	3 cut(s)	170, 383, 757
TaqI	TCGA	4 cut(s)	84, 216, 231, 308
TasI	AATT	6 cut(s)	28, 274, 313, 471, 516, 806
TatI	WGTACW	1 cut(s)	553
TauI	GCSGC	1 cut(s)	616
TfiI	GAWTC	2 cut(s)	445, 539
Tru1I	TTAA	4 cut(s)	359, 414, 503, 731
Tru9I	TTAA	4 cut(s)	359, 414, 503, 731
TseFI	GTSAC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	2 cut(s)	17, 786
XapI	RAATTY	3 cut(s)	28, 274, 806
XceI	RCATGY	2 cut(s)	727, 745
XmnI	GAANNNNTTC	1 cut(s)	725
XspI	CTAG	6 cut(s)	143, 197, 282, 440, 453, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.