Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00210

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Forward (+)

19790 .. 20549

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G005360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAATTACACATTCTTCTTCCCTAGGCTTCTTGTTCATTCTATCTTGCTGGTTATCTATGCAAGCTTTGCTTTCGGAGCTACTCGATTATCAGAAGATGAAGAACAAGCTTTAAAGATCATTGGAAAGACACTGGGAAATATGGACTGGGATTTCACTGCAGATCCTTGTAGCGGAGCATCTGGATGGATTGATACTACCTCAACAGATAGTGCAGCTGCGAACAACGTCACCTGCGGCAATTGTAGTACTGCTGGCGCTGATCAGATCTGCCATGTTACAATCATACTTTTCAAGCACGTGAACGCTGGAAGGCTAAGAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

108

Amino Acids

11.68

Weight (kDa)

5.39

Isoelectric Point (pI)

19.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	242
AciI	CCGC	2 cut(s)	174, 237
AclWI	GGATC	1 cut(s)	158
AcvI	CACGTG	1 cut(s)	301
AfaI	GTAC	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	295
AluBI	AGCT	4 cut(s)	66, 80, 110, 218
AluI	AGCT	4 cut(s)	66, 80, 110, 218
AlwI	GGATC	1 cut(s)	158
ApeKI	GCWGC	2 cut(s)	215, 218
AspA2I	CCTAGG	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	223
AvrII	CCTAGG	1 cut(s)	23
BbrPI	CACGTG	1 cut(s)	301
BbvI	GCAGC	2 cut(s)	205, 227
BccI	CCATC	1 cut(s)	180
BclI	TGATCA	1 cut(s)	262
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	159
BfoI	RGCGCY	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	242
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	3 cut(s)	216, 219, 238
BlnI	CCTAGG	1 cut(s)	23
BlsI	GCNGC	3 cut(s)	217, 220, 239
BmcAI	AGTACT	1 cut(s)	250
BmrI	ACTGGG	2 cut(s)	143, 157
BmsI	GCATC	1 cut(s)	188
BmuI	ACTGGG	2 cut(s)	143, 157
BsaAI	YACGTR	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	138, 152
BseDI	CCNNGG	1 cut(s)	23
BseGI	GGATG	1 cut(s)	191
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseNI	ACTGG	2 cut(s)	138, 152
BseXI	GCAGC	2 cut(s)	205, 227
BsgI	GTGCAG	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	173
Bsp143I	GATC	4 cut(s)	117, 163, 262, 267
BspACI	CCGC	2 cut(s)	174, 237
BspMAI	CTGCAG	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	242
BspPI	GGATC	1 cut(s)	158
BsrI	ACTGG	2 cut(s)	138, 152
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	4 cut(s)	117, 163, 262, 267
BssT1I	CCWWGG	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstBAI	YACGTR	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	64, 256
BstDEI	CTNAG	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	191
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	4 cut(s)	120, 166, 265, 270
BstMBI	GATC	4 cut(s)	117, 163, 262, 267
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 77
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	205, 227
BstX2I	RGATCY	2 cut(s)	163, 267
BstYI	RGATCY	2 cut(s)	163, 267
BtsCI	GGATG	1 cut(s)	191
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	131, 156
BveI	ACCTGC	1 cut(s)	242
Cac8I	GCNNGC	2 cut(s)	64, 256
CfoI	GCGC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	249
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	7 cut(s)	28, 66, 80, 110, 218, 316, 323
CviKI_1	RGCY	7 cut(s)	28, 66, 80, 110, 218, 316, 323
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	4 cut(s)	119, 165, 264, 269
DpnII	GATC	4 cut(s)	117, 163, 262, 267
DraI	TTTAAA	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	23
Eco72I	CACGTG	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	1 cut(s)	278
FaiI	YATR	4 cut(s)	60, 143, 276, 287
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FatI	CATG	1 cut(s)	274
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	3 cut(s)	216, 219, 238
FokI	GGATG	1 cut(s)	198
Fsp4HI	GCNGC	3 cut(s)	216, 219, 238
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	3 cut(s)	216, 219, 238
HaeII	RGCGCY	1 cut(s)	261
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HindIII	AAGCTT	2 cut(s)	64, 108
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	3 cut(s)	77, 94, 267
Hpy188III	TCNNGA	1 cut(s)	183
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	1 cut(s)	306
HpyCH4IV	ACGT	2 cut(s)	228, 300
HpyCH4V	TGCA	3 cut(s)	62, 161, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 77
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	2 cut(s)	228, 300
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	4 cut(s)	117, 163, 262, 267
LmnI	GCTCC	2 cut(s)	77, 176
LpnPI	CCDG	7 cut(s)	35, 119, 133, 168, 240, 247, 294
Lsp1109I	GCAGC	2 cut(s)	205, 227
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	2 cut(s)	228, 300
MaeIII	GTNAC	2 cut(s)	229, 277
MalI	GATC	4 cut(s)	119, 165, 264, 269
MboI	GATC	4 cut(s)	117, 163, 262, 267
MboII	GAAGA	4 cut(s)	7, 10, 107, 113
MfeI	CAATTG	1 cut(s)	241
MflI	RGATCY	2 cut(s)	163, 267
MluCI	AATT	2 cut(s)	4, 241
MnlI	CCTC	1 cut(s)	211
MseI	TTAA	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	184
MspA1I	CMGCKG	1 cut(s)	218
MunI	CAATTG	1 cut(s)	241
MwoI	GCNNNNNNNGC	2 cut(s)	68, 77
NdeII	GATC	4 cut(s)	117, 163, 262, 267
NlaIII	CATG	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	229
PaqCI	CACCTGC	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	217, 220, 239
PmaCI	CACGTG	1 cut(s)	301
PmlI	CACGTG	1 cut(s)	301
Ppu21I	YACGTR	1 cut(s)	301
PspCI	CACGTG	1 cut(s)	301
PstI	CTGCAG	1 cut(s)	163
PsuI	RGATCY	2 cut(s)	163, 267
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
RseI	CAYNNNNRTG	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	3 cut(s)	216, 219, 238
Sau3AI	GATC	4 cut(s)	117, 163, 262, 267
ScaI	AGTACT	1 cut(s)	250
SetI	ASST	8 cut(s)	68, 82, 112, 203, 220, 231, 236, 303
SfaNI	GCATC	1 cut(s)	188
SfcI	CTRYAG	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	184
Sse9I	AATT	2 cut(s)	4, 241
SsiI	CCGC	2 cut(s)	174, 237
SspMI	CTAG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	23
TaiI	ACGT	2 cut(s)	231, 303
TaqI	TCGA	1 cut(s)	85
TasI	AATT	2 cut(s)	4, 241
TatI	WGTACW	1 cut(s)	248
TauI	GCSGC	1 cut(s)	240
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	2 cut(s)	138, 163
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	2 cut(s)	215, 218
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	3 cut(s)	17, 26, 114
TspRI	CASTG	2 cut(s)	138, 163
XmaJI	CCTAGG	1 cut(s)	23
XspI	CTAG	1 cut(s)	24
ZrmI	AGTACT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.