Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Forward (+)

70813628 .. 70814084

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAATTACACGTTCTTCTTCTCTCGGCTTCTTGTTGGTTCTCTCTTGCTAGTTTTCTCTGCGAGCTTTGCTTTCGGAGCTAATCGATTATCTCCGATGAAAGTACAAGCTTTAACGGATATCGGAAAGACACTCGGTAAGAACTGGAATTTCAGCGTAGATCCATGCAGCGGAGAACTTGGATGGAGTAGTAGTGCTTTGGATGACCGAAACATGAATAAAGTCACCTGCGGCAATCGTAGTACTAGTTCCACTACTACGGCCGATCGTATCCGCCATGTCACACACATGTACGTAAAACTCTCTCTCTCTCGTATCGTTCAAAAGATGACTATTCTCTTTAACGAAGAAAGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

119

Amino Acids

13.32

Weight (kDa)

9.83

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	236
AciI	CCGC	3 cut(s)	171, 231, 274
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	148
AfaI	GTAC	3 cut(s)	105, 244, 293
AfiI	CCNNNNNNNGG	1 cut(s)	170
AflIII	ACRYGT	2 cut(s)	9, 288
AgsI	TTSAA	1 cut(s)	323
AhlI	ACTAGT	1 cut(s)	245
AluBI	AGCT	3 cut(s)	66, 80, 110
AluI	AGCT	3 cut(s)	66, 80, 110
AlwI	GGATC	1 cut(s)	155
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	168
ApoI	RAATTY	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	1 cut(s)	177
BceAI	ACGGC	1 cut(s)	276
BciVI	GTATCC	1 cut(s)	281
BcuI	ACTAGT	1 cut(s)	245
BfaI	CTAG	2 cut(s)	50, 246
BfuAI	ACCTGC	1 cut(s)	236
BfuI	GTATCC	1 cut(s)	281
BisI	GCNGC	2 cut(s)	169, 232
BlsI	GCNGC	2 cut(s)	170, 233
BmcAI	AGTACT	1 cut(s)	244
Bsa29I	ATCGAT	1 cut(s)	85
BsaAI	YACGTR	1 cut(s)	295
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	149
BseCI	ATCGAT	1 cut(s)	85
BseGI	GGATG	2 cut(s)	188, 208
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	149
BseX3I	CGGCCG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	180
Bsh1285I	CGRYCG	2 cut(s)	264, 268
BshFI	GGCC	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	85
BsiEI	CGRYCG	2 cut(s)	264, 268
BslI	CCNNNNNNNGG	1 cut(s)	170
BsnI	GGCC	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	160, 265
BspACI	CCGC	3 cut(s)	171, 231, 274
BspANI	GGCC	1 cut(s)	263
BspDI	ATCGAT	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	149
BssMI	GATC	2 cut(s)	160, 265
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	64
BstF5I	GGATG	2 cut(s)	188, 208
BstKTI	GATC	2 cut(s)	163, 268
BstMBI	GATC	2 cut(s)	160, 265
BstMCI	CGRYCG	2 cut(s)	264, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 77
BstNSI	RCATGY	1 cut(s)	292
BstSNI	TACGTA	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BstZI	CGGCCG	1 cut(s)	261
Bsu15I	ATCGAT	1 cut(s)	85
BsuI	GTATCC	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	263
BsuTUI	ATCGAT	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	188, 208
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	1 cut(s)	64
ClaI	ATCGAT	1 cut(s)	85
Csp6I	GTAC	3 cut(s)	104, 243, 292
CviAII	CATG	4 cut(s)	165, 214, 278, 289
CviJI	RGCY	5 cut(s)	28, 66, 80, 110, 263
CviKI_1	RGCY	5 cut(s)	28, 66, 80, 110, 263
CviQI	GTAC	3 cut(s)	104, 243, 292
DpnI	GATC	2 cut(s)	162, 267
DpnII	GATC	2 cut(s)	160, 265
EaeI	YGGCCR	1 cut(s)	261
EagI	CGGCCG	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	263
EclXI	CGGCCG	1 cut(s)	261
Eco105I	TACGTA	1 cut(s)	295
Eco32I	GATATC	1 cut(s)	121
Eco52I	CGGCCG	1 cut(s)	261
EcoRV	GATATC	1 cut(s)	121
FaeI	CATG	4 cut(s)	168, 217, 281, 292
FaiI	YATR	5 cut(s)	166, 215, 279, 290, 358
FatI	CATG	4 cut(s)	164, 213, 277, 288
Fnu4HI	GCNGC	2 cut(s)	169, 232
FokI	GGATG	2 cut(s)	195, 215
Fsp4HI	GCNGC	2 cut(s)	169, 232
FspBI	CTAG	2 cut(s)	50, 246
GluI	GCNGC	2 cut(s)	169, 232
HaeIII	GGCC	1 cut(s)	263
Hin1II	CATG	4 cut(s)	168, 217, 281, 292
HindIII	AAGCTT	1 cut(s)	108
HphI	GGTGA	1 cut(s)	217
Hpy188I	TCNGA	3 cut(s)	77, 96, 125
HpyCH4IV	ACGT	2 cut(s)	11, 294
HpyCH4V	TGCA	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 77
HpySE526I	ACGT	2 cut(s)	11, 294
Hsp92II	CATG	4 cut(s)	168, 217, 281, 292
Kzo9I	GATC	2 cut(s)	160, 265
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	2 cut(s)	130, 241
Lsp1109I	GCAGC	1 cut(s)	180
MaeI	CTAG	2 cut(s)	50, 246
MaeII	ACGT	2 cut(s)	11, 294
MaeIII	GTNAC	2 cut(s)	223, 280
MalI	GATC	2 cut(s)	162, 267
MboI	GATC	2 cut(s)	160, 265
MboII	GAAGA	3 cut(s)	7, 10, 359
MflI	RGATCY	1 cut(s)	160
MluCI	AATT	2 cut(s)	4, 148
MseI	TTAA	2 cut(s)	113, 342
MslI	CAYNNNNRTG	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	68, 77
NdeII	GATC	2 cut(s)	160, 265
NlaIII	CATG	4 cut(s)	168, 217, 281, 292
NmeAIII	GCCGAG	1 cut(s)	4
NmuCI	GTSAC	2 cut(s)	223, 280
NspI	RCATGY	1 cut(s)	292
PaqCI	CACCTGC	1 cut(s)	236
PciI	ACATGT	1 cut(s)	288
PkrI	GCNGC	2 cut(s)	170, 233
Ple19I	CGATCG	1 cut(s)	268
Ppu21I	YACGTR	1 cut(s)	295
PscI	ACATGT	1 cut(s)	288
PsrI	GAACNNNNNNTAC	2 cut(s)	232, 264
PsuI	RGATCY	1 cut(s)	160
PvuI	CGATCG	1 cut(s)	268
RsaI	GTAC	3 cut(s)	105, 244, 293
RsaNI	GTAC	3 cut(s)	104, 243, 292
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	113, 342
SatI	GCNGC	2 cut(s)	169, 232
Sau3AI	GATC	2 cut(s)	160, 265
ScaI	AGTACT	1 cut(s)	244
SetI	ASST	7 cut(s)	14, 68, 82, 112, 230, 297, 356
SmiMI	CAYNNNNRTG	1 cut(s)	287
SnaBI	TACGTA	1 cut(s)	295
SpeI	ACTAGT	1 cut(s)	245
Sse9I	AATT	2 cut(s)	4, 148
SsiI	CCGC	3 cut(s)	171, 231, 274
SspMI	CTAG	2 cut(s)	50, 246
TaiI	ACGT	2 cut(s)	14, 297
TaqI	TCGA	1 cut(s)	85
TaqII	GACCGA	1 cut(s)	222
TasI	AATT	2 cut(s)	4, 148
TatI	WGTACW	2 cut(s)	103, 242
TauI	GCSGC	1 cut(s)	234
Tru1I	TTAA	2 cut(s)	113, 342
Tru9I	TTAA	2 cut(s)	113, 342
TseFI	GTSAC	2 cut(s)	223, 280
TseI	GCWGC	1 cut(s)	168
Tsp45I	GTSAC	2 cut(s)	223, 280
TspDTI	ATGAA	3 cut(s)	17, 113, 230
TspGWI	ACGGA	1 cut(s)	131
XapI	RAATTY	1 cut(s)	148
XceI	RCATGY	1 cut(s)	292
XspI	CTAG	2 cut(s)	50, 246
ZrmI	AGTACT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.