Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

24678064 .. 24686221

Gene Structure 8158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG209000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAAGGCGCCGCTTGGTGACCTCTCCTGCAACTATCTGAGTGGTGCCATCCCTCGAAAATGGGGCTCCCTGCCGCTAGTTAACATTTCCCTTGCTGGAAACCGTTTAACAGGTTCTATCCCCATTGAGATCGGAAACATTAGCACCCTGCAAAGTTTGGAGATCACTTCCAATAATTTTTCAGGACTTCCTCTGGAGCTTGGGAATTTAACTAGCACAGACAGAATGCTTCTTTCCTCAAATAATTTTACTGGGAAGTTGCCTGAAACATTTGCAAGGCTTACCACATTAACGGAATTCATGTTGAGGAATTGCAATCTTATTGGAGAGCTACCTACGTATCTTGCGAATCTGACAGAGTTGGACAAATTATTCTTAACCGGAAACTTGCTGAATGGACCAGTACCCGAATCGCTGAAAGGAAATAGCATGGAAAGAAAAAACAAAAACCATTATCATGTTCTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

156

Amino Acids

17.06

Weight (kDa)

7.79

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	43 - 124	3.7e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	7, 44
AciI	CCGC	2 cut(s)	11, 74
AcsI	RAATTY	2 cut(s)	205, 296
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	1 cut(s)	405
AluBI	AGCT	2 cut(s)	199, 331
AluI	AGCT	2 cut(s)	199, 331
ApoI	RAATTY	2 cut(s)	205, 296
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	398
BaeI	ACNNNNGTAYC	2 cut(s)	323, 356
BanI	GGYRCC	2 cut(s)	7, 44
BanII	GRGCYC	1 cut(s)	68
BccI	CCATC	1 cut(s)	56
BfaI	CTAG	2 cut(s)	77, 213
BfoI	RGCGCY	1 cut(s)	11
BisI	GCNGC	2 cut(s)	11, 74
BlsI	GCNGC	2 cut(s)	12, 75
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	3 cut(s)	9, 46, 67
BmrI	ACTGGG	1 cut(s)	261
BmuI	ACTGGG	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	8
BsaWI	WCCGGW	1 cut(s)	380
Bse1I	ACTGG	2 cut(s)	256, 401
BseGI	GGATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	2 cut(s)	256, 401
BshNI	GGYRCC	2 cut(s)	7, 44
BsiSI	CCGG	1 cut(s)	381
BsmI	GAATGC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	129, 162
BspACI	CCGC	2 cut(s)	11, 74
BspCNI	CTCAG	1 cut(s)	30
BspLI	GGNNCC	3 cut(s)	9, 46, 67
BspT107I	GGYRCC	2 cut(s)	7, 44
BsrI	ACTGG	2 cut(s)	256, 401
BssMI	GATC	2 cut(s)	129, 162
BssNI	GRCGYC	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	8
BstBAI	YACGTR	1 cut(s)	339
BstDEI	CTNAG	1 cut(s)	38
BstEII	GGTNACC	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	132, 165
BstMBI	GATC	2 cut(s)	129, 162
BstPI	GGTNACC	1 cut(s)	17
BstSNI	TACGTA	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	48
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	398
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	3 cut(s)	301, 430, 458
CviJI	RGCY	4 cut(s)	66, 199, 280, 331
CviKI_1	RGCY	4 cut(s)	66, 199, 280, 331
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	1 cut(s)	38
DinI	GGCGCC	1 cut(s)	9
DpnI	GATC	2 cut(s)	131, 164
DpnII	GATC	2 cut(s)	129, 162
Eco105I	TACGTA	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	398
Eco91I	GGTNACC	1 cut(s)	17
EcoO65I	GGTNACC	1 cut(s)	17
EcoRI	GAATTC	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	68
EgeI	GGCGCC	1 cut(s)	9
EheI	GGCGCC	1 cut(s)	9
FaeI	CATG	3 cut(s)	304, 433, 461
FaiI	YATR	3 cut(s)	302, 431, 459
FatI	CATG	3 cut(s)	300, 429, 457
Fnu4HI	GCNGC	2 cut(s)	11, 74
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	2 cut(s)	11, 74
FspBI	CTAG	2 cut(s)	77, 213
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	2 cut(s)	11, 74
GsuI	CTGGAG	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	11
HapII	CCGG	1 cut(s)	381
HhaI	GCGC	1 cut(s)	10
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	3 cut(s)	304, 433, 461
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	2 cut(s)	349, 410
HpaI	GTTAAC	1 cut(s)	82
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	3 cut(s)	39, 134, 354
Hpy188III	TCNNGA	2 cut(s)	183, 194
Hpy8I	GTNNAC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	4 cut(s)	30, 151, 275, 315
HpyF3I	CTNAG	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	338
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	3 cut(s)	304, 433, 461
HspAI	GCGC	1 cut(s)	8
KasI	GGCGCC	1 cut(s)	7
KspAI	GTTAAC	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	129, 162
LmnI	GCTCC	2 cut(s)	71, 196
MaeI	CTAG	2 cut(s)	77, 213
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	2 cut(s)	131, 164
MboI	GATC	2 cut(s)	129, 162
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	6 cut(s)	175, 205, 244, 296, 310, 368
Mly113I	GGCGCC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	5 cut(s)	32, 63, 201, 247, 300
MseI	TTAA	5 cut(s)	81, 107, 209, 290, 377
MslI	CAYNNNNRTG	1 cut(s)	456
MspI	CCGG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	231
NarI	GGCGCC	1 cut(s)	8
NdeII	GATC	2 cut(s)	129, 162
NlaIII	CATG	3 cut(s)	304, 433, 461
NlaIV	GGNNCC	3 cut(s)	9, 46, 67
NmuCI	GTSAC	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	344
PctI	GAATGC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	349, 410
PkrI	GCNGC	2 cut(s)	12, 75
PluTI	GGCGCC	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	339
PspEI	GGTNACC	1 cut(s)	17
PspN4I	GGNNCC	3 cut(s)	9, 46, 67
PspPI	GGNCC	1 cut(s)	398
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
RseI	CAYNNNNRTG	1 cut(s)	456
SaqAI	TTAA	5 cut(s)	81, 107, 209, 290, 377
SatI	GCNGC	2 cut(s)	11, 74
Sau3AI	GATC	2 cut(s)	129, 162
Sau96I	GGNCC	1 cut(s)	398
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	6 cut(s)	24, 115, 201, 333, 337, 341
SfoI	GGCGCC	1 cut(s)	9
SinI	GGWCC	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	456
SnaBI	TACGTA	1 cut(s)	339
Sse9I	AATT	6 cut(s)	175, 205, 244, 296, 310, 368
SsiI	CCGC	2 cut(s)	11, 74
SspDI	GGCGCC	1 cut(s)	7
SspMI	CTAG	2 cut(s)	77, 213
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	1 cut(s)	55
TasI	AATT	6 cut(s)	175, 205, 244, 296, 310, 368
TauI	GCSGC	2 cut(s)	13, 76
TfiI	GAWTC	2 cut(s)	349, 410
Tru1I	TTAA	5 cut(s)	81, 107, 209, 290, 377
Tru9I	TTAA	5 cut(s)	81, 107, 209, 290, 377
TseFI	GTSAC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	17, 289
TspGWI	ACGGA	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	2 cut(s)	205, 296
XspI	CTAG	2 cut(s)	77, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.