Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023717.1

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1348

Gene Structure 1348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023717.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 281 bp

atgaattacacgttcttcttccctaggcttcttgttcattttatcttgctggttatctatgcaagctttgctttcggagctactcgattaccagaagatgaagtacaagctttaaggagcattggaaatagactgggaaagggctgggatttcatggcagatccctgtagcggagcatctggatggattaatactacctcaggcagcgcagctgataacaacgtcacctgcggcaattgtagtactgctggcgatgatcagatctgccatgttacaatcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

93

Amino Acids

10.07

Weight (kDa)

4.95

Isoelectric Point (pI)

23.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	236
AciI	CCGC	2 cut(s)	171, 231
AclWI	GGATC	1 cut(s)	155
AfaI	GTAC	2 cut(s)	105, 244
AfiI	CCNNNNNNNGG	1 cut(s)	170
AflIII	ACRYGT	1 cut(s)	9
AluBI	AGCT	4 cut(s)	66, 80, 110, 212
AluI	AGCT	4 cut(s)	66, 80, 110, 212
AlwI	GGATC	1 cut(s)	155
ApeKI	GCWGC	2 cut(s)	204, 209
AseI	ATTAAT	1 cut(s)	189
AspA2I	CCTAGG	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	217
AvrII	CCTAGG	1 cut(s)	23
AxyI	CCTNAGG	1 cut(s)	199
BarI	GAAGNNNNNNTAC	2 cut(s)	87, 119
BbvI	GCAGC	2 cut(s)	216, 221
BccI	CCATC	1 cut(s)	177
BclI	TGATCA	1 cut(s)	256
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	166
BfuAI	ACCTGC	1 cut(s)	236
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	3 cut(s)	205, 210, 232
BlnI	CCTAGG	1 cut(s)	23
BlsI	GCNGC	3 cut(s)	206, 211, 233
BmcAI	AGTACT	1 cut(s)	244
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	185
BmuI	ACTGGG	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	138
Bse21I	CCTNAGG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	23
BseGI	GGATG	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	216, 221
BseYI	CCCAGC	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	170
Bsp143I	GATC	3 cut(s)	160, 256, 261
BspACI	CCGC	2 cut(s)	171, 231
BspCNI	CTCAG	1 cut(s)	212
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	3 cut(s)	160, 256, 261
BssT1I	CCWWGG	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	64, 250
BstDEI	CTNAG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	3 cut(s)	163, 259, 264
BstMBI	GATC	3 cut(s)	160, 256, 261
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 77
BstSFI	CTRYAG	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	216, 221
BstX2I	RGATCY	2 cut(s)	160, 261
BstYI	RGATCY	2 cut(s)	160, 261
Bsu36I	CCTNAGG	1 cut(s)	199
BtgZI	GCGATG	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	188
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	2 cut(s)	64, 250
CfoI	GCGC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	104, 243
CviAII	CATG	2 cut(s)	154, 269
CviJI	RGCY	6 cut(s)	28, 66, 80, 110, 144, 212
CviKI_1	RGCY	6 cut(s)	28, 66, 80, 110, 144, 212
CviQI	GTAC	2 cut(s)	104, 243
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	3 cut(s)	162, 258, 263
DpnII	GATC	3 cut(s)	160, 256, 261
Eco130I	CCWWGG	1 cut(s)	23
Eco81I	CCTNAGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	2 cut(s)	157, 272
FaiI	YATR	3 cut(s)	60, 155, 270
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FatI	CATG	2 cut(s)	153, 268
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	205, 210, 232
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	3 cut(s)	205, 210, 232
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	3 cut(s)	205, 210, 232
GsaI	CCCAGC	1 cut(s)	148
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	2 cut(s)	157, 272
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HindIII	AAGCTT	2 cut(s)	64, 108
HphI	GGTGA	1 cut(s)	217
Hpy188I	TCNGA	2 cut(s)	77, 261
Hpy188III	TCNNGA	1 cut(s)	180
HpyCH4IV	ACGT	2 cut(s)	11, 222
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 77
HpyF3I	CTNAG	1 cut(s)	199
HpySE526I	ACGT	2 cut(s)	11, 222
Hsp92II	CATG	2 cut(s)	157, 272
HspAI	GCGC	1 cut(s)	207
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	160, 256, 261
LmnI	GCTCC	3 cut(s)	77, 117, 173
LpnPI	CCDG	9 cut(s)	35, 105, 119, 130, 165, 178, 186, 234, 241
Lsp1109I	GCAGC	2 cut(s)	216, 221
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	2 cut(s)	11, 222
MaeIII	GTNAC	2 cut(s)	223, 271
MalI	GATC	3 cut(s)	162, 258, 263
MboI	GATC	3 cut(s)	160, 256, 261
MboII	GAAGA	3 cut(s)	7, 10, 107
MfeI	CAATTG	1 cut(s)	235
MflI	RGATCY	2 cut(s)	160, 261
MluCI	AATT	2 cut(s)	4, 235
MnlI	CCTC	1 cut(s)	208
MseI	TTAA	2 cut(s)	113, 189
MslI	CAYNNNNRTG	1 cut(s)	181
MspA1I	CMGCKG	1 cut(s)	212
MunI	CAATTG	1 cut(s)	235
MwoI	GCNNNNNNNGC	2 cut(s)	68, 77
NdeII	GATC	3 cut(s)	160, 256, 261
NlaIII	CATG	2 cut(s)	157, 272
NmuCI	GTSAC	1 cut(s)	223
PaqCI	CACCTGC	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	206, 211, 233
PshBI	ATTAAT	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	144
PsuI	RGATCY	2 cut(s)	160, 261
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	2 cut(s)	105, 244
RsaNI	GTAC	2 cut(s)	104, 243
RseI	CAYNNNNRTG	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	113, 189
SatI	GCNGC	3 cut(s)	205, 210, 232
Sau3AI	GATC	3 cut(s)	160, 256, 261
ScaI	AGTACT	1 cut(s)	244
SetI	ASST	8 cut(s)	14, 68, 82, 112, 200, 214, 225, 230
SfaNI	GCATC	1 cut(s)	185
SfcI	CTRYAG	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	181
Sse9I	AATT	2 cut(s)	4, 235
SsiI	CCGC	2 cut(s)	171, 231
SspMI	CTAG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	23
TaiI	ACGT	2 cut(s)	14, 225
TaqI	TCGA	1 cut(s)	85
TasI	AATT	2 cut(s)	4, 235
TatI	WGTACW	2 cut(s)	103, 242
TauI	GCSGC	1 cut(s)	234
Tru1I	TTAA	2 cut(s)	113, 189
Tru9I	TTAA	2 cut(s)	113, 189
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	2 cut(s)	204, 209
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	4 cut(s)	17, 26, 114, 142
VspI	ATTAAT	1 cut(s)	189
XmaJI	CCTAGG	1 cut(s)	23
XspI	CTAG	1 cut(s)	24
ZrmI	AGTACT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.