Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

23652076 .. 23662060

Gene Structure 9985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG211100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGATGATGCGCAGACTTCTGAGAGCTCAGAATTTGCCAGGAACACTTCCGTCAGAGTTGGCAAGGCTTCCCTATCTCCAACAAATGACCATGGATTTCAATTATTTCTCTGGAGGTCTTCCTTGGGAACTTGGATTTTTGCCGAGCATAGAAACACTGATGTTGAGGAGTTGCAATATTAATGGACAGCTACCAGAATATTTTTCGTACATGACAGAGTTGACAACTTTAGACCTAAGCTTCAACAAGCTAACTGGAAAAGTCCCAAGGAGCTTTGTTGCTCCAACGAATAATTTGGATTACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

102

Amino Acids

11.76

Weight (kDa)

6.15

Isoelectric Point (pI)

70.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	48 - 93	1.1e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	31
AfaI	GTAC	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	2 cut(s)	100, 244
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	5 cut(s)	26, 190, 240, 250, 273
AluI	AGCT	5 cut(s)	26, 190, 240, 250, 273
Alw21I	GWGCWC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	31
AseI	ATTAAT	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	12
BanII	GRGCYC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	90, 122, 266
Bse1I	ACTGG	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	3 cut(s)	90, 122, 266
BseMII	CTCAG	2 cut(s)	11, 41
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp19I	CCATGG	1 cut(s)	90
BspCNI	CTCAG	2 cut(s)	12, 40
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	3 cut(s)	90, 122, 266
BssT1I	CCWWGG	3 cut(s)	90, 122, 266
Bst2UI	CCWGG	1 cut(s)	39
BstDEI	CTNAG	3 cut(s)	20, 27, 236
BstDSI	CCRYGG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	12
BstNI	CCWGG	1 cut(s)	39
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	110
BtgI	CCRYGG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	155
CfoI	GCGC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	3 cut(s)	91, 211, 304
CviJI	RGCY	6 cut(s)	26, 67, 190, 240, 250, 273
CviKI_1	RGCY	6 cut(s)	26, 67, 190, 240, 250, 273
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	3 cut(s)	20, 27, 236
Ecl136II	GAGCTC	1 cut(s)	26
Eco130I	CCWWGG	3 cut(s)	90, 122, 266
Eco24I	GRGCYC	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	26
EcoICRI	GAGCTC	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	37
EcoT14I	CCWWGG	3 cut(s)	90, 122, 266
EcoT38I	GRGCYC	1 cut(s)	28
ErhI	CCWWGG	3 cut(s)	90, 122, 266
FaeI	CATG	3 cut(s)	94, 214, 307
FaiI	YATR	4 cut(s)	92, 149, 212, 305
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	3 cut(s)	90, 210, 303
FriOI	GRGCYC	1 cut(s)	28
FspI	TGCGCA	1 cut(s)	11
GlaI	GCGC	1 cut(s)	11
GsuI	CTGGAG	1 cut(s)	132
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	3 cut(s)	94, 214, 307
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	3 cut(s)	21, 30, 55
Hpy188III	TCNNGA	1 cut(s)	111
Hpy8I	GTNNAC	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	174
HpyF3I	CTNAG	3 cut(s)	20, 27, 236
Hsp92II	CATG	3 cut(s)	94, 214, 307
HspAI	GCGC	1 cut(s)	10
LmnI	GCTCC	2 cut(s)	270, 286
LpnPI	CCDG	5 cut(s)	24, 51, 96, 207, 240
MboII	GAAGA	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	3 cut(s)	31, 100, 292
MmeI	TCCRAC	2 cut(s)	103, 308
MnlI	CCTC	2 cut(s)	107, 159
MseI	TTAA	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	90
NlaIII	CATG	3 cut(s)	94, 214, 307
NmeAIII	GCCGAG	1 cut(s)	168
NsbI	TGCGCA	1 cut(s)	11
NspI	RCATGY	1 cut(s)	307
PciI	ACATGT	1 cut(s)	303
PscI	ACATGT	1 cut(s)	303
PshBI	ATTAAT	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SacI	GAGCTC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	180
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	28
SetI	ASST	7 cut(s)	28, 118, 192, 237, 242, 252, 275
Sse9I	AATT	3 cut(s)	31, 100, 292
SspI	AATATT	2 cut(s)	178, 200
SstI	GAGCTC	1 cut(s)	28
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	3 cut(s)	90, 122, 266
TasI	AATT	3 cut(s)	31, 100, 292
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	162
VspI	ATTAAT	1 cut(s)	180
XapI	RAATTY	1 cut(s)	31
XceI	RCATGY	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.