Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

23580429 .. 23601204

Gene Structure 20776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG206800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTTAAACGTTTTGGCCACCGGCCAAAATATGAGTTACAGATTCTTCTTCCCTAGGCTTCTTGTTTATTCTATCTTGCTGGTTATCCTTGCAAGCTTTGCTCTCGGAGCTACTCGATTATCAGAACATGAAGTACAAGCTTTAAAGATCATTGGAAAGACATTGGGGAAGGACCGGAATTTCATTGCAGATCCTTGTAGCAGCGAAGCATCTAGATGGATTGATACTACCTCAACAGACACCGAAGCTACGAATAACGTCACCTGCGGCAATTGTACTGCTGCTGGCGATGATCAGATCTGCCATGTTACAAGCATATCTCTGAAAGTTCAGGATTTGGTAGGAACACTCCCACCAGAGTTGGCGAGGCTTCCCTATCTACAAAATATTGATCTCACCCGCAACTATTTGAATGGCACCATCCCTCGAGAATGGGGCTCCCTGCCGCTAGTTAACATTTCCCTTGTTGGAAACCGTTTGACAGGTTCTATCCCCATTGAGATCGGAAACATTAGCACCCTGCAAAGTTTGGACATCACTTCCAATAATTTTTCAGGACCTCTTCACCTGGAGCTTGGGAATTTAATCAGCATAAAGAGAATGCTTCTTTCCTCAAACAATTTTACTGGGAAGTTGCCCGAAACATTTGCAAGGCTTACCACATTAACGGACTTTCGGGTTGATGACAATCACTTTTCTGGGAAGATACCTAATTTCATTCAGAAGTGGACAAATCTTACAAAACTAGTTATTCAGGCTAGTGGTTTGACAGGGCCAATTCCACCCAACCTCCCTCTTTTGAAGGAATTAAGTGACCTGAGAATTACTAACTTGGATGGACCTGAAGCACCTTTTCCTCGACTTGATAATATGACAAAACTGAAAACACTGATGTTGAGGAATTGCAATCTTATTGGAGAGCTACCTACGCTTGTGAAACTGGAAAAGTTGGACAACTTGTTAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

322

Amino Acids

35.49

Weight (kDa)

6.9

Isoelectric Point (pI)

23.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	416
AciI	CCGC	3 cut(s)	267, 400, 446
AclI	AACGTT	1 cut(s)	9
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	2 cut(s)	15, 22
AcsI	RAATTY	2 cut(s)	178, 580
AcuI	CTGAAG	1 cut(s)	864
AfaI	GTAC	2 cut(s)	135, 277
AgsI	TTSAA	2 cut(s)	412, 802
AhlI	ACTAGT	1 cut(s)	745
AjnI	CCWGG	1 cut(s)	567
AluBI	AGCT	6 cut(s)	96, 110, 140, 248, 574, 922
AluI	AGCT	6 cut(s)	96, 110, 140, 248, 574, 922
AlwI	GGATC	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	426
AoxI	GGCC	3 cut(s)	15, 22, 773
ApeKI	GCWGC	2 cut(s)	201, 281
ApoI	RAATTY	2 cut(s)	178, 580
AspA2I	CCTAGG	1 cut(s)	53
AspS9I	GGNCC	4 cut(s)	172, 557, 773, 839
AsuHPI	GGTGA	3 cut(s)	253, 388, 557
AvaI	CYCGRG	1 cut(s)	426
AvaII	GGWCC	3 cut(s)	172, 557, 839
AvrII	CCTAGG	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	440
BbvI	GCAGC	2 cut(s)	213, 268
BccI	CCATC	3 cut(s)	210, 428, 830
BcgI	CGANNNNNNTGC	2 cut(s)	629, 663
BciT130I	CCWGG	1 cut(s)	569
BclI	TGATCA	1 cut(s)	292
BcuI	ACTAGT	1 cut(s)	745
BfaI	CTAG	5 cut(s)	54, 213, 449, 746, 759
BfuAI	ACCTGC	1 cut(s)	272
BglII	AGATCT	1 cut(s)	297
BisI	GCNGC	4 cut(s)	202, 268, 282, 446
BlnI	CCTAGG	1 cut(s)	53
BlsI	GCNGC	4 cut(s)	203, 269, 283, 447
Bme1390I	CCNGG	1 cut(s)	569
Bme18I	GGWCC	3 cut(s)	172, 557, 839
BmeT110I	CYCGRG	1 cut(s)	426
BmgT120I	GGNCC	4 cut(s)	172, 557, 773, 839
BmiI	GGNNCC	2 cut(s)	418, 439
BmrFI	CCNGG	1 cut(s)	569
BmrI	ACTGGG	1 cut(s)	636
BmsI	GCATC	1 cut(s)	218
BmuI	ACTGGG	1 cut(s)	636
BpmI	CTGGAG	1 cut(s)	590
BsaBI	GATNNNNATC	1 cut(s)	687
BsaJI	CCNNGG	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	774, 804
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	2 cut(s)	631, 945
Bse3DI	GCAATG	1 cut(s)	183
Bse8I	GATNNNNATC	1 cut(s)	687
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	2 cut(s)	420, 841
BseJI	GATNNNNATC	1 cut(s)	687
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	809
BseNI	ACTGG	2 cut(s)	631, 945
BseXI	GCAGC	2 cut(s)	213, 268
BshFI	GGCC	3 cut(s)	17, 24, 775
BshNI	GGYRCC	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	426
BsiSI	CCGG	2 cut(s)	21, 175
BsmI	GAATGC	1 cut(s)	606
BsnI	GGCC	3 cut(s)	17, 24, 775
BsoBI	CYCGRG	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp143I	GATC	6 cut(s)	147, 190, 292, 297, 391, 501
BspACI	CCGC	3 cut(s)	267, 400, 446
BspANI	GGCC	3 cut(s)	17, 24, 775
BspCNI	CTCAG	1 cut(s)	810
BspLI	GGNNCC	2 cut(s)	418, 439
BspMI	ACCTGC	1 cut(s)	272
BspPI	GGATC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	2 cut(s)	631, 945
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	6 cut(s)	147, 190, 292, 297, 391, 501
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	1 cut(s)	476
Bst6I	CTCTTC	1 cut(s)	567
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	94, 286
BstDEI	CTNAG	1 cut(s)	818
BstF5I	GGATG	2 cut(s)	420, 841
BstKTI	GATC	6 cut(s)	150, 193, 295, 300, 394, 504
BstMBI	GATC	6 cut(s)	147, 190, 292, 297, 391, 501
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 107, 928
BstNI	CCWGG	1 cut(s)	569
BstSCI	CCNGG	1 cut(s)	567
BstV1I	GCAGC	2 cut(s)	213, 268
BstX2I	RGATCY	2 cut(s)	190, 297
BstYI	RGATCY	2 cut(s)	190, 297
BsuRI	GGCC	3 cut(s)	17, 24, 775
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	2 cut(s)	420, 841
BtsIMutI	CAGTG	1 cut(s)	887
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	2 cut(s)	94, 286
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	4 cut(s)	172, 557, 773, 839
Csp6I	GTAC	2 cut(s)	134, 276
CspCI	CAANNNNNGTGG	2 cut(s)	342, 377
CviAII	CATG	2 cut(s)	128, 305
CviQI	GTAC	2 cut(s)	134, 276
DdeI	CTNAG	1 cut(s)	818
DpnI	GATC	6 cut(s)	149, 192, 294, 299, 393, 503
DpnII	GATC	6 cut(s)	147, 190, 292, 297, 391, 501
DraI	TTTAAA	1 cut(s)	144
EaeI	YGGCCR	2 cut(s)	15, 22
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	440
Eco47I	GGWCC	3 cut(s)	172, 557, 839
Eco57I	CTGAAG	1 cut(s)	864
Eco88I	CYCGRG	1 cut(s)	426
EcoO109I	RGGNCCY	1 cut(s)	557
EcoRII	CCWGG	1 cut(s)	567
EcoT14I	CCWWGG	1 cut(s)	53
EcoT38I	GRGCYC	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	2 cut(s)	131, 308
FaiI	YATR	7 cut(s)	32, 129, 306, 317, 593, 872, 967
FatI	CATG	2 cut(s)	127, 304
FauI	CCCGC	1 cut(s)	407
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	4 cut(s)	202, 268, 282, 446
FokI	GGATG	2 cut(s)	407, 848
FriOI	GRGCYC	1 cut(s)	440
Fsp4HI	GCNGC	4 cut(s)	202, 268, 282, 446
FspBI	CTAG	5 cut(s)	54, 213, 449, 746, 759
GluI	GCNGC	4 cut(s)	202, 268, 282, 446
GsuI	CTGGAG	1 cut(s)	590
HaeIII	GGCC	3 cut(s)	17, 24, 775
HapII	CCGG	2 cut(s)	21, 175
Hin1II	CATG	2 cut(s)	131, 308
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HindIII	AAGCTT	2 cut(s)	94, 138
HinfI	GANTC	1 cut(s)	42
HpaI	GTTAAC	1 cut(s)	454
HpaII	CCGG	2 cut(s)	21, 175
HphI	GGTGA	3 cut(s)	253, 388, 557
Hpy166II	GTNNAC	2 cut(s)	454, 729
Hpy188I	TCNGA	6 cut(s)	107, 124, 297, 324, 506, 723
Hpy188III	TCNNGA	4 cut(s)	213, 332, 428, 555
Hpy8I	GTNNAC	2 cut(s)	454, 729
HpyAV	CCTTC	2 cut(s)	163, 796
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4IV	ACGT	2 cut(s)	9, 258
HpyCH4V	TGCA	5 cut(s)	92, 188, 523, 650, 906
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 107, 928
HpyF3I	CTNAG	1 cut(s)	818
HpySE526I	ACGT	2 cut(s)	9, 258
Hsp92II	CATG	2 cut(s)	131, 308
Ksp22I	TGATCA	1 cut(s)	292
KspAI	GTTAAC	1 cut(s)	454
Kzo9I	GATC	6 cut(s)	147, 190, 292, 297, 391, 501
LmnI	GCTCC	3 cut(s)	107, 443, 571
Lsp1109I	GCAGC	2 cut(s)	213, 268
LweI	GCATC	1 cut(s)	218
MaeI	CTAG	5 cut(s)	54, 213, 449, 746, 759
MaeII	ACGT	2 cut(s)	9, 258
MaeIII	GTNAC	4 cut(s)	35, 259, 307, 812
MalI	GATC	6 cut(s)	149, 192, 294, 299, 393, 503
MboI	GATC	6 cut(s)	147, 190, 292, 297, 391, 501
MboII	GAAGA	4 cut(s)	37, 40, 554, 715
MfeI	CAATTG	1 cut(s)	271
MflI	RGATCY	2 cut(s)	190, 297
MhlI	GDGCHC	1 cut(s)	440
MlsI	TGGCCA	1 cut(s)	17
MluNI	TGGCCA	1 cut(s)	17
MmeI	TCCRAC	2 cut(s)	448, 930
MnlI	CCTC	9 cut(s)	241, 360, 435, 570, 622, 800, 804, 867, 891
Mox20I	TGGCCA	1 cut(s)	17
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	6 cut(s)	5, 143, 453, 584, 665, 809
MslI	CAYNNNNRTG	1 cut(s)	214
Msp20I	TGGCCA	1 cut(s)	17
MspI	CCGG	2 cut(s)	21, 175
MspR9I	CCNGG	1 cut(s)	569
MunI	CAATTG	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	569
MwoI	GCNNNNNNNGC	3 cut(s)	98, 107, 928
NdeII	GATC	6 cut(s)	147, 190, 292, 297, 391, 501
NlaIII	CATG	2 cut(s)	131, 308
NlaIV	GGNNCC	2 cut(s)	418, 439
NmuCI	GTSAC	2 cut(s)	259, 812
PaeR7I	CTCGAG	1 cut(s)	426
PaqCI	CACCTGC	1 cut(s)	272
PctI	GAATGC	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	42
PkrI	GCNGC	4 cut(s)	203, 269, 283, 447
PpuMI	RGGWCCY	1 cut(s)	557
Psp1406I	AACGTT	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	557
Psp6I	CCWGG	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	2 cut(s)	418, 439
PspPI	GGNCC	4 cut(s)	172, 557, 773, 839
PspPPI	RGGWCCY	1 cut(s)	557
PsrI	GAACNNNNNNTAC	2 cut(s)	117, 149
PsuI	RGATCY	2 cut(s)	190, 297
RsaI	GTAC	2 cut(s)	135, 277
RsaNI	GTAC	2 cut(s)	134, 276
RseI	CAYNNNNRTG	1 cut(s)	214
SaqAI	TTAA	6 cut(s)	5, 143, 453, 584, 665, 809
SatI	GCNGC	4 cut(s)	202, 268, 282, 446
Sau3AI	GATC	6 cut(s)	147, 190, 292, 297, 391, 501
Sau96I	GGNCC	4 cut(s)	172, 557, 773, 839
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	1 cut(s)	440
SfaNI	GCATC	1 cut(s)	218
Sfr274I	CTCGAG	1 cut(s)	426
SinI	GGWCC	3 cut(s)	172, 557, 839
SlaI	CTCGAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
SpeI	ACTAGT	1 cut(s)	745
SsiI	CCGC	3 cut(s)	267, 400, 446
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	5 cut(s)	54, 213, 449, 746, 759
StyD4I	CCNGG	1 cut(s)	567
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	476
TaiI	ACGT	2 cut(s)	12, 261
TaqI	TCGA	3 cut(s)	115, 427, 859
TatI	WGTACW	2 cut(s)	133, 275
TauI	GCSGC	2 cut(s)	270, 448
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	6 cut(s)	5, 143, 453, 584, 665, 809
Tru9I	TTAA	6 cut(s)	5, 143, 453, 584, 665, 809
TscAI	CASTG	1 cut(s)	894
TseFI	GTSAC	2 cut(s)	259, 812
TseI	GCWGC	2 cut(s)	201, 281
Tsp45I	GTSAC	2 cut(s)	259, 812
TspDTI	ATGAA	3 cut(s)	144, 172, 706
TspGWI	ACGGA	1 cut(s)	683
TspRI	CASTG	1 cut(s)	894
VpaK11BI	GGWCC	3 cut(s)	172, 557, 839
XapI	RAATTY	2 cut(s)	178, 580
XbaI	TCTAGA	1 cut(s)	212
XhoI	CTCGAG	1 cut(s)	426
XmaJI	CCTAGG	1 cut(s)	53
XspI	CTAG	5 cut(s)	54, 213, 449, 746, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.