Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Forward (+)

38401010 .. 38410624

Gene Structure 9615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1268200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGATGAATATGTTCTTCCCTCGACTTCTTCCTCATTCTCTTTTCTTTGTAGCTTGCTTTGTAACTTTTGCCTTTGGAGCTGCTCGATTGCCAAATGATGAAGTGCAAATTTTGAAAGACATAGCAAAGACACTGGGGAAGACGGACTGGGATTTCAGTGGAGATGCAGATCCATGCAGCGGCCAACTTCCATGGGCTGATCCAAGCGCACCCAAAGGATTAGAGAATGCCATCAGCTGTAATTGCTCCTACGAAAACTCCACCGTCTGCTATATTACCAGCATAATTCTAAAATCCCAAGATTTGCAAGGAACACTCCCACCAGAGCTGGTACATCTCACCTATCTTCAAGAAATCGACCTCACCCGCAACTACCTGAGTGGTACCATCCCTCCAGAATGGAGCTCTCTTCCACTAGTGAACATATCCCTTCTTGGAAATCGTTTGACGGGTTCTATCCCCAAAGAGCTTGGAGACATCACCACCCTGAAGAGTTTGGACATCAGTTTCAATAATTTTTCTGGACCTCTCCCTCAGGAGCTTGGATCTTGGGCCAACATAGAAAGAATGCTGCTTTCCTCAAACAACTTTAGTGGGGAGTTGCCAGAAACATTTGCAATGCTTACCAAAATAAAGGACTTTCGGGTTAGTGACAGTCACTTTTCCGAGCGGATACCTGATTTTATTGAGAACTGGATAAATCTTGAAAAACTAGTGATTCAAGCTAGCGGTTTGACAGGGCCAATTCCTTCTGGCATTTCTCTTTTGACAAGCTTAACTGACTTGAGAATCACTGACTTGAGTGGACCTGAATCACCAATTCCTTCACTTAATAAGATGAAAAACATGAGGACACTGATGTTGAGGAGTTGCAACCTTATTGGAAAGCTACCTCCATATCTTGCACAAATGAACAAATTGAAAACTTTAGACCTCAGCTTTAACAAGCTGACCGGAGAAATTCCAAGCAGCTTCGGTAGTCTAGCAGATGTGGTTTATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

335

Amino Acids

36.9

Weight (kDa)

5.01

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	383
AccBSI	CCGCTC	1 cut(s)	670
AciI	CCGC	4 cut(s)	180, 367, 670, 729
AclWI	GGATC	3 cut(s)	164, 194, 553
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	2 cut(s)	108, 960
AcuI	CTGAAG	1 cut(s)	509
AfaI	GTAC	2 cut(s)	333, 385
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	6 cut(s)	115, 350, 511, 707, 722, 922
AhlI	ACTAGT	2 cut(s)	415, 712
Alw21I	GWGCWC	1 cut(s)	407
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	3 cut(s)	164, 194, 553
AoxI	GGCC	3 cut(s)	181, 552, 740
ApeKI	GCWGC	4 cut(s)	80, 177, 571, 969
ApoI	RAATTY	2 cut(s)	108, 960
Asp700I	GAANNNNTTC	1 cut(s)	11
Asp718I	GGTACC	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	4 cut(s)	524, 552, 740, 806
AsuHPI	GGTGA	4 cut(s)	331, 355, 472, 807
AsuNHI	GCTAGC	1 cut(s)	725
AvaII	GGWCC	2 cut(s)	524, 806
AxyI	CCTNAGG	1 cut(s)	534
BanI	GGYRCC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	407
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	407
BbvCI	CCTCAGC	1 cut(s)	935
BbvI	GCAGC	4 cut(s)	67, 189, 558, 981
BccI	CCATC	2 cut(s)	239, 395
BciVI	GTATCC	1 cut(s)	666
BcoDI	GTCTC	1 cut(s)	468
BcuI	ACTAGT	2 cut(s)	415, 712
BfaI	CTAG	4 cut(s)	416, 713, 726, 983
BfuI	GTATCC	1 cut(s)	666
BisI	GCNGC	5 cut(s)	81, 178, 181, 572, 970
BlsI	GCNGC	5 cut(s)	82, 179, 182, 573, 971
Bme18I	GGWCC	2 cut(s)	524, 806
BmgT120I	GGNCC	4 cut(s)	524, 552, 740, 806
BmiI	GGNNCC	1 cut(s)	385
BmrI	ACTGGG	2 cut(s)	143, 157
BmsI	GCATC	1 cut(s)	154
BmtI	GCTAGC	1 cut(s)	729
BmuI	ACTGGG	2 cut(s)	143, 157
BpiI	GAAGAC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	935
BpuEI	CTTGAG	2 cut(s)	805, 820
BsaBI	GATNNNNATC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	953
BsaXI	ACNNNNNCTCC	4 cut(s)	242, 272, 376, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	3 cut(s)	138, 152, 698
Bse21I	CCTNAGG	1 cut(s)	534
Bse3DI	GCAATG	1 cut(s)	624
Bse8I	GATNNNNATC	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	387
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	3 cut(s)	368, 548, 949
BseNI	ACTGG	3 cut(s)	138, 152, 698
BseRI	GAGGAG	1 cut(s)	880
BseXI	GCAGC	4 cut(s)	67, 189, 558, 981
BshFI	GGCC	3 cut(s)	183, 554, 742
BshNI	GGYRCC	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	954
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	468
BsmI	GAATGC	2 cut(s)	232, 573
BsnI	GGCC	3 cut(s)	183, 554, 742
Bsp1286I	GDGCHC	1 cut(s)	407
Bsp143I	GATC	3 cut(s)	169, 199, 545
Bsp19I	CCATGG	1 cut(s)	191
BspACI	CCGC	4 cut(s)	180, 367, 670, 729
BspANI	GGCC	3 cut(s)	183, 554, 742
BspCNI	CTCAG	3 cut(s)	369, 547, 948
BspLI	GGNNCC	1 cut(s)	385
BspOI	GCTAGC	1 cut(s)	729
BspPI	GGATC	3 cut(s)	164, 194, 553
BspT107I	GGYRCC	1 cut(s)	383
BsrBI	CCGCTC	1 cut(s)	670
BsrDI	GCAATG	1 cut(s)	624
BsrI	ACTGG	3 cut(s)	138, 152, 698
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	3 cut(s)	169, 199, 545
BssT1I	CCWWGG	1 cut(s)	191
Bst4CI	ACNGT	2 cut(s)	265, 656
Bst6I	CTCTTC	2 cut(s)	414, 485
BstC8I	GCNNGC	2 cut(s)	55, 727
BstDEI	CTNAG	3 cut(s)	377, 534, 935
BstDSI	CCRYGG	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	3 cut(s)	172, 202, 548
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	3 cut(s)	169, 199, 545
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 243
BstV1I	GCAGC	4 cut(s)	67, 189, 558, 981
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	2 cut(s)	169, 545
BstYI	RGATCY	2 cut(s)	169, 545
Bsu36I	CCTNAGG	1 cut(s)	534
BsuI	GTATCC	1 cut(s)	666
BsuRI	GGCC	3 cut(s)	183, 554, 742
BtgI	CCRYGG	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	387
BtsIMutI	CAGTG	4 cut(s)	131, 163, 792, 854
Cac8I	GCNNGC	2 cut(s)	55, 727
CfoI	GCGC	1 cut(s)	209
Cfr13I	GGNCC	4 cut(s)	524, 552, 740, 806
Csp6I	GTAC	2 cut(s)	332, 384
CspCI	CAANNNNNGTGG	2 cut(s)	574, 609
CviAII	CATG	3 cut(s)	174, 192, 847
CviQI	GTAC	2 cut(s)	332, 384
DdeI	CTNAG	3 cut(s)	377, 534, 935
DpnI	GATC	3 cut(s)	171, 201, 547
DpnII	GATC	3 cut(s)	169, 199, 545
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	2 cut(s)	414, 485
EarI	CTCTTC	2 cut(s)	414, 485
Ecl136II	GAGCTC	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	407
Eco47I	GGWCC	2 cut(s)	524, 806
Eco53kI	GAGCTC	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	509
Eco81I	CCTNAGG	1 cut(s)	534
EcoICRI	GAGCTC	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	191
FaeI	CATG	3 cut(s)	177, 195, 850
FatI	CATG	3 cut(s)	173, 191, 846
FauI	CCCGC	1 cut(s)	374
Fnu4HI	GCNGC	5 cut(s)	81, 178, 181, 572, 970
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	1 cut(s)	407
Fsp4HI	GCNGC	5 cut(s)	81, 178, 181, 572, 970
FspBI	CTAG	4 cut(s)	416, 713, 726, 983
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	5 cut(s)	81, 178, 181, 572, 970
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	3 cut(s)	183, 554, 742
HapII	CCGG	1 cut(s)	954
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	3 cut(s)	177, 195, 850
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	772
HinfI	GANTC	3 cut(s)	718, 789, 812
HpaII	CCGG	1 cut(s)	954
HphI	GGTGA	4 cut(s)	331, 355, 472, 807
Hpy166II	GTNNAC	2 cut(s)	421, 806
Hpy188I	TCNGA	1 cut(s)	667
Hpy188III	TCNNGA	5 cut(s)	350, 395, 522, 536, 704
Hpy8I	GTNNAC	2 cut(s)	421, 806
HpyAV	CCTTC	3 cut(s)	440, 759, 834
HpyCH4III	ACNGT	2 cut(s)	265, 656
HpyCH4V	TGCA	7 cut(s)	106, 167, 177, 307, 617, 873, 905
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 243
HpyF3I	CTNAG	3 cut(s)	377, 534, 935
Hsp92II	CATG	3 cut(s)	177, 195, 850
HspAI	GCGC	1 cut(s)	207
KpnI	GGTACC	1 cut(s)	387
Kzo9I	GATC	3 cut(s)	169, 199, 545
LmnI	GCTCC	4 cut(s)	77, 251, 402, 538
Lsp1109I	GCAGC	4 cut(s)	67, 189, 558, 981
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	4 cut(s)	416, 713, 726, 983
MaeIII	GTNAC	3 cut(s)	61, 650, 656
MalI	GATC	3 cut(s)	171, 201, 547
MbiI	CCGCTC	1 cut(s)	670
MboI	GATC	3 cut(s)	169, 199, 545
MboII	GAAGA	6 cut(s)	7, 20, 151, 338, 401, 502
MflI	RGATCY	2 cut(s)	169, 545
MhlI	GDGCHC	1 cut(s)	407
MluCI	AATT	8 cut(s)	108, 241, 285, 514, 744, 819, 917, 960
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	3 cut(s)	776, 831, 942
MspA1I	CMGCKG	2 cut(s)	180, 237
MspI	CCGG	1 cut(s)	954
Mva1269I	GAATGC	2 cut(s)	232, 573
MwoI	GCNNNNNNNGC	2 cut(s)	77, 243
NcoI	CCATGG	1 cut(s)	191
NdeII	GATC	3 cut(s)	169, 199, 545
NheI	GCTAGC	1 cut(s)	725
NlaIII	CATG	3 cut(s)	177, 195, 850
NlaIV	GGNNCC	1 cut(s)	385
NmuCI	GTSAC	2 cut(s)	650, 656
PctI	GAATGC	2 cut(s)	232, 573
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	3 cut(s)	718, 789, 812
PkrI	GCNGC	5 cut(s)	82, 179, 182, 573, 971
Psp124BI	GAGCTC	1 cut(s)	407
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	4 cut(s)	524, 552, 740, 806
PsuI	RGATCY	2 cut(s)	169, 545
PvuII	CAGCTG	1 cut(s)	237
RsaI	GTAC	2 cut(s)	333, 385
RsaNI	GTAC	2 cut(s)	332, 384
SacI	GAGCTC	1 cut(s)	407
SaqAI	TTAA	3 cut(s)	776, 831, 942
SatI	GCNGC	5 cut(s)	81, 178, 181, 572, 970
Sau3AI	GATC	3 cut(s)	169, 199, 545
Sau96I	GGNCC	4 cut(s)	524, 552, 740, 806
SduI	GDGCHC	1 cut(s)	407
SfaNI	GCATC	1 cut(s)	154
SinI	GGWCC	2 cut(s)	524, 806
SmlI	CTYRAG	2 cut(s)	784, 799
SmoI	CTYRAG	2 cut(s)	784, 799
SpeI	ACTAGT	2 cut(s)	415, 712
Sse9I	AATT	8 cut(s)	108, 241, 285, 514, 744, 819, 917, 960
SsiI	CCGC	4 cut(s)	180, 367, 670, 729
SspMI	CTAG	4 cut(s)	416, 713, 726, 983
SstI	GAGCTC	1 cut(s)	407
StyI	CCWWGG	1 cut(s)	191
TaaI	ACNGT	2 cut(s)	265, 656
TaqI	TCGA	3 cut(s)	22, 85, 357
TasI	AATT	8 cut(s)	108, 241, 285, 514, 744, 819, 917, 960
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	3 cut(s)	718, 789, 812
Tru1I	TTAA	3 cut(s)	776, 831, 942
Tru9I	TTAA	3 cut(s)	776, 831, 942
TscAI	CASTG	4 cut(s)	138, 163, 799, 861
TseFI	GTSAC	2 cut(s)	650, 656
TseI	GCWGC	4 cut(s)	80, 177, 571, 969
Tsp45I	GTSAC	2 cut(s)	650, 656
TspDTI	ATGAA	4 cut(s)	20, 114, 854, 926
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	4 cut(s)	138, 163, 799, 861
VpaK11BI	GGWCC	2 cut(s)	524, 806
XapI	RAATTY	2 cut(s)	108, 960
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	4 cut(s)	416, 713, 726, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.