Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Forward (+)

62987071 .. 63006180

Gene Structure 19110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG466900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCCCAGATGGGAACTGACCATTTTTCATTCCTAAGGTTGCTTCTTGCATATCTCATCTTCAGTTTCACTGCATTTTTCTTCCCTGCAAGTTTTGGACAAGCAGCCACAGCTAAGCTTCAGAGCCAGGAAGTGAATGCATTGAAAGAGATAGCAAAGAAGTTGGGGAAGAAAGACTGGGATTTTGGGAAAGATCCTTGCACAGGAGAAGGGAATTGGAGAGTTTTTGTAGATGGGATGAAAAGCTTTGAGAGCTCTGTAACTTGTGATTGCAGCTTCAACAACAATTCCTCTTGCCACGTAGTCAGCATAGCTTTGAAGGCACAGAATTTAACTGGTACACTGCCACCAGAATTCTCAAAGCTTCATTACCTCAAAGTATTAGATGTGAGTAGAAACCTCCTTACTGGTTCCATACCTTCTCAATGGGCAACCATGCAGTTGGAAGAACTAGGCCTTATGGGGAACAGATTGTCGGGTCCATTTCCAAAAGTCCTCACCAATATTACCACCCTCAGAAACTTGAGCATAGAAGGAAACCTTTTTTCAGGGCCCATTCCGTTGGAAATTGGAAAGTTGGTCAAGTTAGAAAAGCTCATTTTATCGTCAAATCTATTCACCGGAGAATTGCCACAAGCACTAGCAAAGTTGATCAATTTGCTTGACATTAGCCAGATCAAGTGGGATACTACTGTGCAACCAGTATTCTACTTAATCAATCAAGTAAATAAAAAGTGTCTTTGCTTTGTTGAAGGATTGGTTGATATATCTGTTGTCATTGATTGTGAGGTCATTGCACACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

268

Amino Acids

29.66

Weight (kDa)

6.89

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	188
AcsI	RAATTY	2 cut(s)	328, 353
AcuI	CTGAAG	2 cut(s)	46, 104
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	4 cut(s)	145, 280, 319, 752
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	8 cut(s)	113, 118, 246, 255, 276, 314, 364, 595
AluI	AGCT	8 cut(s)	113, 118, 246, 255, 276, 314, 364, 595
Alw21I	GWGCWC	1 cut(s)	257
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	3 cut(s)	3, 454, 551
ApaI	GGGCCC	1 cut(s)	555
ApeKI	GCWGC	2 cut(s)	104, 273
ApoI	RAATTY	2 cut(s)	328, 353
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AspS9I	GGNCC	4 cut(s)	4, 479, 551, 552
AsuHPI	GGTGA	2 cut(s)	490, 610
AvaII	GGWCC	1 cut(s)	479
AxyI	CCTNAGG	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	555
BaeI	ACNNNNGTAYC	2 cut(s)	678, 711
BanII	GRGCYC	2 cut(s)	257, 555
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	116, 285
BccI	CCATC	2 cut(s)	4, 227
BciT130I	CCWGG	1 cut(s)	128
BciVI	GTATCC	1 cut(s)	679
BclI	TGATCA	1 cut(s)	651
BfaI	CTAG	2 cut(s)	452, 641
BfuI	GTATCC	1 cut(s)	679
BisI	GCNGC	2 cut(s)	105, 274
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	2 cut(s)	106, 275
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	4 cut(s)	4, 479, 551, 552
BmiI	GGNNCC	3 cut(s)	412, 480, 553
BmrFI	CCNGG	1 cut(s)	128
BmrI	ACTGGG	1 cut(s)	187
BmuI	ACTGGG	1 cut(s)	187
Bpu1102I	GCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	544
BsaAI	YACGTR	1 cut(s)	301
BsaWI	WCCGGW	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	4 cut(s)	182, 340, 412, 701
Bse21I	CCTNAGG	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	792
BseBI	CCWGG	1 cut(s)	128
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	1 cut(s)	792
BseMII	CTCAG	1 cut(s)	529
BseNI	ACTGG	4 cut(s)	182, 340, 412, 701
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	2 cut(s)	116, 285
BshFI	GGCC	3 cut(s)	5, 456, 553
BsiHKAI	GWGCWC	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	621
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	142
BsnI	GGCC	3 cut(s)	5, 456, 553
Bsp120I	GGGCCC	1 cut(s)	551
Bsp1286I	GDGCHC	2 cut(s)	257, 555
Bsp143I	GATC	3 cut(s)	193, 651, 675
Bsp1720I	GCTNAGC	1 cut(s)	114
BspANI	GGCC	3 cut(s)	5, 456, 553
BspCNI	CTCAG	1 cut(s)	528
BspLI	GGNNCC	3 cut(s)	412, 480, 553
BspPI	GGATC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	792
BsrI	ACTGG	4 cut(s)	182, 340, 412, 701
BssMI	GATC	3 cut(s)	193, 651, 675
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	694
BstBAI	YACGTR	1 cut(s)	301
BstDEI	CTNAG	3 cut(s)	35, 114, 515
BstENI	CCTNNNNNAGG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	3 cut(s)	196, 654, 678
BstMBI	GATC	3 cut(s)	193, 651, 675
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 252, 320
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	555
BstV1I	GCAGC	2 cut(s)	116, 285
BstX2I	RGATCY	1 cut(s)	193
BstXI	CCANNNNNNTGG	2 cut(s)	442, 562
BstYI	RGATCY	1 cut(s)	193
Bsu36I	CCTNAGG	1 cut(s)	35
BsuI	GTATCC	1 cut(s)	679
BsuRI	GGCC	3 cut(s)	5, 456, 553
BtsCI	GGATG	1 cut(s)	243
BtsI	GCAGTG	2 cut(s)	69, 341
BtsIMutI	CAGTG	2 cut(s)	69, 341
Cfr13I	GGNCC	4 cut(s)	4, 479, 551, 552
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	1 cut(s)	436
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	3 cut(s)	35, 114, 515
DpnI	GATC	3 cut(s)	195, 653, 677
DpnII	GATC	3 cut(s)	193, 651, 675
Ecl136II	GAGCTC	1 cut(s)	255
Eco147I	AGGCCT	1 cut(s)	456
Eco24I	GRGCYC	2 cut(s)	257, 555
Eco47I	GGWCC	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	255
Eco57I	CTGAAG	2 cut(s)	46, 104
Eco81I	CCTNAGG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	255
EcoNI	CCTNNNNNAGG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	142
EcoT38I	GRGCYC	2 cut(s)	257, 555
FaeI	CATG	1 cut(s)	439
FaiI	YATR	7 cut(s)	52, 311, 416, 437, 461, 530, 767
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FatI	CATG	1 cut(s)	435
FbaI	TGATCA	1 cut(s)	651
Fnu4HI	GCNGC	2 cut(s)	105, 274
FokI	GGATG	1 cut(s)	250
FriOI	GRGCYC	2 cut(s)	257, 555
Fsp4HI	GCNGC	2 cut(s)	105, 274
FspBI	CTAG	2 cut(s)	452, 641
GluI	GCNGC	2 cut(s)	105, 274
HaeIII	GGCC	3 cut(s)	5, 456, 553
HapII	CCGG	1 cut(s)	621
Hin1II	CATG	1 cut(s)	439
HindIII	AAGCTT	3 cut(s)	116, 244, 362
HpaII	CCGG	1 cut(s)	621
HphI	GGTGA	2 cut(s)	490, 610
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	2 cut(s)	123, 518
Hpy8I	GTNNAC	1 cut(s)	341
HpyAV	CCTTC	5 cut(s)	203, 313, 429, 527, 746
HpyCH4III	ACNGT	1 cut(s)	694
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	9 cut(s)	50, 74, 89, 140, 201, 273, 439, 697, 797
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 252, 320
HpyF3I	CTNAG	3 cut(s)	35, 114, 515
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	439
Ksp22I	TGATCA	1 cut(s)	651
Kzo9I	GATC	3 cut(s)	193, 651, 675
Lsp1109I	GCAGC	2 cut(s)	116, 285
MaeI	CTAG	2 cut(s)	452, 641
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	3 cut(s)	195, 653, 677
MboI	GATC	3 cut(s)	193, 651, 675
MboII	GAAGA	4 cut(s)	52, 73, 181, 458
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	2 cut(s)	257, 555
MluCI	AATT	7 cut(s)	214, 286, 328, 353, 567, 626, 655
MmeI	TCCRAC	2 cut(s)	423, 543
MnlI	CCTC	6 cut(s)	301, 383, 410, 506, 524, 781
Mph1103I	ATGCAT	1 cut(s)	142
MseI	TTAA	2 cut(s)	332, 713
MspI	CCGG	1 cut(s)	621
MspR9I	CCNGG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	3 cut(s)	110, 252, 320
NdeII	GATC	3 cut(s)	193, 651, 675
NlaIII	CATG	1 cut(s)	439
NlaIV	GGNNCC	3 cut(s)	412, 480, 553
NsiI	ATGCAT	1 cut(s)	142
PceI	AGGCCT	1 cut(s)	456
PctI	GAATGC	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	106, 275
Ppu21I	YACGTR	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	412, 480, 553
PspOMI	GGGCCC	1 cut(s)	551
PspPI	GGNCC	4 cut(s)	4, 479, 551, 552
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SacI	GAGCTC	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	332, 713
SatI	GCNGC	2 cut(s)	105, 274
Sau3AI	GATC	3 cut(s)	193, 651, 675
Sau96I	GGNCC	4 cut(s)	4, 479, 551, 552
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	2 cut(s)	257, 555
SinI	GGWCC	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
Sse9I	AATT	7 cut(s)	214, 286, 328, 353, 567, 626, 655
SseBI	AGGCCT	1 cut(s)	456
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	2 cut(s)	452, 641
SstI	GAGCTC	1 cut(s)	257
StuI	AGGCCT	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	694
TaiI	ACGT	1 cut(s)	303
TasI	AATT	7 cut(s)	214, 286, 328, 353, 567, 626, 655
Tru1I	TTAA	2 cut(s)	332, 713
Tru9I	TTAA	2 cut(s)	332, 713
TscAI	CASTG	2 cut(s)	76, 348
TseI	GCWGC	2 cut(s)	104, 273
TspDTI	ATGAA	3 cut(s)	18, 254, 356
TspGWI	ACGGA	1 cut(s)	549
TspRI	CASTG	2 cut(s)	76, 348
VpaK11BI	GGWCC	1 cut(s)	479
XagI	CCTNNNNNAGG	1 cut(s)	201
XapI	RAATTY	2 cut(s)	328, 353
XspI	CTAG	2 cut(s)	452, 641
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.