Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

23287591 .. 23289950

Gene Structure 2360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30905

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTTTGAGTCGTGCAAAGCAAGCAAAAGAGCACTTTTTGTCATATTGTATGTTTTGTTCCAAATTTCTAGTATCTACAACCACGACTCATTTTTCTTTCTTATTTTCTTCTTTAGTGACCTCTCCCGCAACTATCTGAGTGGTACCATCCCTCGAGAATGGGGCTCCCTGCCACTGGTTAACATTTCCCTTGCGGGAAACCGTTTAACAGGTTCTATCCCCATTGAGCTCGGAAACATTAGCACCCTGCAAAGTTTGGACATCACTTCCAATTATTTTACAGGACTTCCTCTGGAGCTTGGGAATTTAACCAGCATAGACAAAATGTTTCTTGCCTCGAACAATTTTACTGGGAAGTTGCCCGAAACATTTGCAAGGCTTACCACATTAACGGACTTAGTAATTCAGGCTAGTGGTTTGACTGGGCCAATTCCATCCAACATCTCTCTTTTGAAGGAATTAACTAACCTGAGAATTACTGACTTGGATGGACCTGAAGCACCTTTTCCTCCACTTGATAATATGACAAAACTGAAAGCACTGATGTTGAGGAATTGCAATCTGACTGGAGAGCTACCTACGTATCTTGCGAAACTGACAGAGTTGGACAAATTGTTAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

207

Amino Acids

22.95

Weight (kDa)

5.42

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	76 - 204	2.6e-09	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	2 cut(s)	127, 194
AcsI	RAATTY	2 cut(s)	63, 304
AcuI	CTGAAG	1 cut(s)	516
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	454
AluBI	AGCT	3 cut(s)	229, 298, 574
AluI	AGCT	3 cut(s)	229, 298, 574
Alw21I	GWGCWC	2 cut(s)	34, 231
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	1 cut(s)	425
ApoI	RAATTY	2 cut(s)	63, 304
Asp718I	GGTACC	1 cut(s)	143
AspS9I	GGNCC	2 cut(s)	425, 491
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	491
BaeI	ACNNNNGTAYC	2 cut(s)	566, 599
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	2 cut(s)	167, 231
Bbv12I	GWGCWC	2 cut(s)	34, 231
BccI	CCATC	3 cut(s)	155, 442, 482
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BfaI	CTAG	2 cut(s)	69, 411
Bme18I	GGWCC	1 cut(s)	491
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	2 cut(s)	425, 491
BmiI	GGNNCC	2 cut(s)	145, 166
BmrI	ACTGGG	2 cut(s)	360, 432
BmuI	ACTGGG	2 cut(s)	360, 432
BpmI	CTGGAG	2 cut(s)	314, 588
BsaAI	YACGTR	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	4 cut(s)	180, 355, 427, 571
BseGI	GGATG	3 cut(s)	147, 434, 493
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	2 cut(s)	128, 461
BseNI	ACTGG	4 cut(s)	180, 355, 427, 571
BshFI	GGCC	1 cut(s)	427
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	2 cut(s)	34, 231
BsiHKCI	CYCGRG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	175
BsnI	GGCC	1 cut(s)	427
BsoBI	CYCGRG	1 cut(s)	153
Bsp1286I	GDGCHC	3 cut(s)	34, 167, 231
BspACI	CCGC	2 cut(s)	127, 194
BspANI	GGCC	1 cut(s)	427
BspCNI	CTCAG	2 cut(s)	129, 462
BspLI	GGNNCC	2 cut(s)	145, 166
BspT107I	GGYRCC	1 cut(s)	143
BsrI	ACTGG	4 cut(s)	180, 355, 427, 571
Bst4CI	ACNGT	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	582
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	3 cut(s)	137, 397, 470
BstF5I	GGATG	3 cut(s)	147, 434, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstSNI	TACGTA	1 cut(s)	582
BsuRI	GGCC	1 cut(s)	427
BtsCI	GGATG	3 cut(s)	147, 434, 493
BtsIMutI	CAGTG	2 cut(s)	173, 539
Cac8I	GCNNGC	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	425, 491
Csp6I	GTAC	1 cut(s)	144
CviJI	RGCY	7 cut(s)	165, 229, 298, 379, 410, 427, 574
CviKI_1	RGCY	7 cut(s)	165, 229, 298, 379, 410, 427, 574
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	3 cut(s)	137, 397, 470
Ecl136II	GAGCTC	1 cut(s)	229
Eco105I	TACGTA	1 cut(s)	582
Eco24I	GRGCYC	2 cut(s)	167, 231
Eco47I	GGWCC	1 cut(s)	491
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	153
EcoICRI	GAGCTC	1 cut(s)	229
EcoT38I	GRGCYC	2 cut(s)	167, 231
FaiI	YATR	5 cut(s)	44, 51, 317, 524, 622
FauI	CCCGC	2 cut(s)	134, 187
FokI	GGATG	3 cut(s)	134, 421, 500
FriOI	GRGCYC	2 cut(s)	167, 231
FspBI	CTAG	2 cut(s)	69, 411
GsuI	CTGGAG	2 cut(s)	314, 588
HaeIII	GGCC	1 cut(s)	427
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	2 cut(s)	8, 86
HpaI	GTTAAC	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	3 cut(s)	138, 233, 564
Hpy188III	TCNNGA	2 cut(s)	155, 293
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	581
HpyCH4V	TGCA	4 cut(s)	15, 250, 374, 558
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpyF3I	CTNAG	3 cut(s)	137, 397, 470
HpySE526I	ACGT	1 cut(s)	581
KpnI	GGTACC	1 cut(s)	147
KspAI	GTTAAC	1 cut(s)	181
LmnI	GCTCC	2 cut(s)	170, 295
MaeI	CTAG	2 cut(s)	69, 411
MaeII	ACGT	1 cut(s)	581
MaeIII	GTNAC	1 cut(s)	116
MboII	GAAGA	1 cut(s)	100
MhlI	GDGCHC	3 cut(s)	34, 167, 231
MlyI	GAGTC	2 cut(s)	17, 80
MmeI	TCCRAC	2 cut(s)	462, 585
MnlI	CCTC	6 cut(s)	131, 162, 300, 346, 519, 543
MseI	TTAA	5 cut(s)	180, 206, 308, 389, 461
MwoI	GCNNNNNNNGC	1 cut(s)	21
NlaIV	GGNNCC	2 cut(s)	145, 166
NmuCI	GTSAC	1 cut(s)	116
PaeR7I	CTCGAG	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	587
PleI	GAGTC	2 cut(s)	16, 80
PpsI	GAGTC	2 cut(s)	16, 80
Ppu21I	YACGTR	1 cut(s)	582
Psp124BI	GAGCTC	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	145, 166
PspPI	GGNCC	2 cut(s)	425, 491
PsrI	GAACNNNNNNTAC	2 cut(s)	41, 73
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	5 cut(s)	180, 206, 308, 389, 461
Sau96I	GGNCC	2 cut(s)	425, 491
SchI	GAGTC	2 cut(s)	17, 80
SduI	GDGCHC	3 cut(s)	34, 167, 231
Sfr274I	CTCGAG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	491
SlaI	CTCGAG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
SnaBI	TACGTA	1 cut(s)	582
SsiI	CCGC	2 cut(s)	127, 194
SspMI	CTAG	2 cut(s)	69, 411
SstI	GAGCTC	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	584
TaqI	TCGA	2 cut(s)	154, 338
Tru1I	TTAA	5 cut(s)	180, 206, 308, 389, 461
Tru9I	TTAA	5 cut(s)	180, 206, 308, 389, 461
TscAI	CASTG	2 cut(s)	180, 546
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	2 cut(s)	180, 546
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	2 cut(s)	63, 304
XhoI	CTCGAG	1 cut(s)	153
XspI	CTAG	2 cut(s)	69, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.