Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

23551723 .. 23558668

Gene Structure 6946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30915

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCTGTTGATCAATCGGCTTCTGGTTCATTTTCTACTGCTATTTATCTTTGCAACCTTGGCTTTCGCAGCTAATCGATTAATAGCCGATGAAGTACAAGCTTTGAAGGACATAGCAAAGACACTGGGGAAGACAGACTGGAATTTTAGTGCTGATCCATGTAGCGGAGAATATGGATGGATTAATGATCAAGCCGACAAATATTTTGCGAATAAAGTCACCTGCGGCAATTGTACGATTTCCGATGAGGCCAATGCCACCAGTACTGATCAGATATGCCATGTTGTTAGCATAGTTCTGAAAGCTCAGAATTTGTCAGGAACACTTCCGTCAGAGTTGGTGAGGCTTCCCTATCTCCAACAAATTGAGCTTGTTCGTAACTATCTGCATGGAACCATCCCTCCACAATGGGGCTCCCTGCCACTAGTTAACATTTCTCTTGTTGGAAACCGCTTGACAGGTTCTATCCCTGTTGAGCTTGCAAATATTACCACCCTGCAAAGTTTGACCATGGATTTCAATTATTTCTCTGGAGGTCTTCCTTGGCAACTTGGAAATTTGCCCAGCATAGAAACACTCATTCTTAGCTCGAACAATTTTACTGGGGAGTTGCCGGGTACATTTGAAAAGCTTACCAAATTAAAAGAGTTTCGGATTATGGACAATTCCTTTTCTGGGAAGATACCAAATTATATTCAAAACTGGACAAATCTTAGGAAACTAGGGATTCAGGCTAGTGGTTTGACGGGACCAATACCTTCTGGAATTTCTCTATTGACGAATTTAACTGATCTGATGTTGAGGAGTTGCAATATTAATGGACAGCTACCAGAATATTTCTCGGACATGACAGATTTGACAACTTTAGACCTCAGCTTCAACAAGCTAACTGGAAAAGTCCCAAGCAGCTTATTTGTTGCTCCAAATAATTTGGATTACATATTCTTAACTGGAAATTTGCTGAATGGATCCGAGCCTCTGTGGATTCAGGGAGACAATGTTGATCTTTCATATAACAATTTCACCCCAGAGCCTGTAGATTGTAAGCAAGCTGGCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

353

Amino Acids

38.95

Weight (kDa)

4.94

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	180 - 330	9.5e-09	Leucine-rich repeat region
LRR_8	PF13855	260 - 321	2.5e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	230
Acc36I	ACCTGC	2 cut(s)	230, 1047
AciI	CCGC	3 cut(s)	165, 225, 451
AclWI	GGATC	3 cut(s)	149, 963, 976
AcsI	RAATTY	6 cut(s)	142, 310, 556, 765, 781, 955
AfaI	GTAC	4 cut(s)	96, 235, 265, 619
AfiI	CCNNNNNNNGG	3 cut(s)	164, 410, 675
AgsI	TTSAA	5 cut(s)	106, 520, 626, 698, 880
AhlI	ACTAGT	1 cut(s)	424
AloI	GAACNNNNNNTCC	2 cut(s)	385, 417
Alw26I	GTCTC	1 cut(s)	987
AlwI	GGATC	3 cut(s)	149, 963, 976
AlwNI	CAGNNNCTG	1 cut(s)	1034
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	2 cut(s)	68, 906
ApoI	RAATTY	6 cut(s)	142, 310, 556, 765, 781, 955
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AseI	ATTAAT	3 cut(s)	80, 183, 816
AspS9I	GGNCC	1 cut(s)	749
AsuC2I	CCSGG	1 cut(s)	615
AsuHPI	GGTGA	3 cut(s)	211, 352, 1015
AvaII	GGWCC	1 cut(s)	749
BamHI	GGATCC	1 cut(s)	968
BanII	GRGCYC	1 cut(s)	416
BbsI	GAAGAC	2 cut(s)	137, 530
BbvCI	CCTCAGC	1 cut(s)	872
BbvI	GCAGC	2 cut(s)	80, 918
BccI	CCATC	2 cut(s)	171, 404
BclI	TGATCA	3 cut(s)	9, 187, 268
BcnI	CCSGG	1 cut(s)	615
BcoDI	GTCTC	1 cut(s)	987
BcuI	ACTAGT	1 cut(s)	424
BfaI	CTAG	3 cut(s)	425, 722, 735
BfmI	CTRYAG	1 cut(s)	1035
BfuAI	ACCTGC	2 cut(s)	230, 1047
BisI	GCNGC	3 cut(s)	69, 226, 907
BlsI	GCNGC	3 cut(s)	70, 227, 908
BmcAI	AGTACT	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	615
Bme18I	GGWCC	1 cut(s)	749
BmgT120I	GGNCC	1 cut(s)	749
BmiI	GGNNCC	4 cut(s)	394, 415, 750, 970
BmrFI	CCNGG	1 cut(s)	615
BmrI	ACTGGG	2 cut(s)	134, 612
BmuI	ACTGGG	2 cut(s)	134, 612
BpiI	GAAGAC	2 cut(s)	137, 530
BpmI	CTGGAG	1 cut(s)	552
Bpu10I	CCTNAGC	1 cut(s)	872
BpuMI	CCSGG	1 cut(s)	615
Bsa29I	ATCGAT	1 cut(s)	76
BsaJI	CCNNGG	3 cut(s)	57, 510, 542
BsaXI	ACNNNNNCTCC	4 cut(s)	385, 415, 984, 1014
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 410, 675
Bse1I	ACTGG	7 cut(s)	129, 143, 261, 607, 707, 895, 955
BseCI	ATCGAT	1 cut(s)	76
BseDI	CCNNGG	3 cut(s)	57, 510, 542
BseGI	GGATG	2 cut(s)	182, 396
BseLI	CCNNNNNNNGG	3 cut(s)	164, 410, 675
BseMII	CTCAG	2 cut(s)	320, 886
BseNI	ACTGG	7 cut(s)	129, 143, 261, 607, 707, 895, 955
BseRI	GAGGAG	1 cut(s)	817
BseXI	GCAGC	2 cut(s)	80, 918
BseYI	CCCAGC	1 cut(s)	563
BshFI	GGCC	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	614
BslFI	GGGAC	2 cut(s)	762, 884
BslI	CCNNNNNNNGG	3 cut(s)	164, 410, 675
BsmAI	GTCTC	1 cut(s)	987
BsmFI	GGGAC	2 cut(s)	762, 884
BsnI	GGCC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	7 cut(s)	9, 154, 187, 268, 790, 968, 1003
Bsp19I	CCATGG	1 cut(s)	510
BspACI	CCGC	3 cut(s)	165, 225, 451
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	2 cut(s)	319, 885
BspDI	ATCGAT	1 cut(s)	76
BspLI	GGNNCC	4 cut(s)	394, 415, 750, 970
BspMI	ACCTGC	2 cut(s)	230, 1047
BspPI	GGATC	3 cut(s)	149, 963, 976
BsrI	ACTGG	7 cut(s)	129, 143, 261, 607, 707, 895, 955
BssECI	CCNNGG	3 cut(s)	57, 510, 542
BssMI	GATC	7 cut(s)	9, 154, 187, 268, 790, 968, 1003
BssT1I	CCWWGG	3 cut(s)	57, 510, 542
BstC8I	GCNNGC	3 cut(s)	480, 1050, 1054
BstDEI	CTNAG	4 cut(s)	306, 584, 713, 872
BstDSI	CCRYGG	1 cut(s)	510
BstF5I	GGATG	2 cut(s)	182, 396
BstKTI	GATC	7 cut(s)	12, 157, 190, 271, 793, 971, 1006
BstMAI	GTCTC	1 cut(s)	987
BstMBI	GATC	7 cut(s)	9, 154, 187, 268, 790, 968, 1003
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 68
BstSCI	CCNGG	1 cut(s)	613
BstSFI	CTRYAG	1 cut(s)	1035
BstV1I	GCAGC	2 cut(s)	80, 918
BstV2I	GAAGAC	2 cut(s)	137, 530
BstX2I	RGATCY	1 cut(s)	968
BstYI	RGATCY	1 cut(s)	968
Bsu15I	ATCGAT	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	251
BsuTUI	ATCGAT	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	510
BtsCI	GGATG	2 cut(s)	182, 396
BtsIMutI	CAGTG	1 cut(s)	122
BveI	ACCTGC	2 cut(s)	230, 1047
Cac8I	GCNNGC	3 cut(s)	480, 1050, 1054
CaiI	CAGNNNCTG	1 cut(s)	1034
Cfr13I	GGNCC	1 cut(s)	749
ClaI	ATCGAT	1 cut(s)	76
Csp6I	GTAC	4 cut(s)	95, 234, 264, 618
CviAII	CATG	5 cut(s)	159, 281, 389, 511, 847
CviQI	GTAC	4 cut(s)	95, 234, 264, 618
DdeI	CTNAG	4 cut(s)	306, 584, 713, 872
DpnI	GATC	7 cut(s)	11, 156, 189, 270, 792, 970, 1005
DpnII	GATC	7 cut(s)	9, 154, 187, 268, 790, 968, 1003
Eco130I	CCWWGG	3 cut(s)	57, 510, 542
Eco24I	GRGCYC	1 cut(s)	416
Eco47I	GGWCC	1 cut(s)	749
EcoT14I	CCWWGG	3 cut(s)	57, 510, 542
EcoT38I	GRGCYC	1 cut(s)	416
ErhI	CCWWGG	3 cut(s)	57, 510, 542
FaeI	CATG	5 cut(s)	162, 284, 392, 514, 850
FaqI	GGGAC	2 cut(s)	762, 884
FatI	CATG	5 cut(s)	158, 280, 388, 510, 846
FbaI	TGATCA	3 cut(s)	9, 187, 268
Fnu4HI	GCNGC	3 cut(s)	69, 226, 907
FokI	GGATG	2 cut(s)	189, 383
FriOI	GRGCYC	1 cut(s)	416
Fsp4HI	GCNGC	3 cut(s)	69, 226, 907
FspBI	CTAG	3 cut(s)	425, 722, 735
GluI	GCNGC	3 cut(s)	69, 226, 907
GsaI	CCCAGC	1 cut(s)	567
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	1 cut(s)	614
Hin1II	CATG	5 cut(s)	162, 284, 392, 514, 850
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HindIII	AAGCTT	2 cut(s)	99, 629
HinfI	GANTC	2 cut(s)	727, 985
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	3 cut(s)	211, 352, 1015
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	9 cut(s)	244, 273, 300, 309, 334, 654, 795, 844, 973
Hpy188III	TCNNGA	3 cut(s)	318, 531, 762
Hpy8I	GTNNAC	1 cut(s)	430
HpyAV	CCTTC	2 cut(s)	100, 768
HpyCH4V	TGCA	5 cut(s)	53, 388, 482, 499, 810
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 68
HpyF3I	CTNAG	4 cut(s)	306, 584, 713, 872
Hsp92II	CATG	5 cut(s)	162, 284, 392, 514, 850
Ksp22I	TGATCA	3 cut(s)	9, 187, 268
KspAI	GTTAAC	1 cut(s)	430
Kzo9I	GATC	7 cut(s)	9, 154, 187, 268, 790, 968, 1003
LmnI	GCTCC	2 cut(s)	419, 925
Lsp1109I	GCAGC	2 cut(s)	80, 918
MaeI	CTAG	3 cut(s)	425, 722, 735
MaeIII	GTNAC	2 cut(s)	217, 377
MalI	GATC	7 cut(s)	11, 156, 189, 270, 792, 970, 1005
MboI	GATC	7 cut(s)	9, 154, 187, 268, 790, 968, 1003
MboII	GAAGA	3 cut(s)	142, 530, 691
MfeI	CAATTG	1 cut(s)	229
MflI	RGATCY	1 cut(s)	968
MhlI	GDGCHC	1 cut(s)	416
MmeI	TCCRAC	2 cut(s)	382, 424
MnlI	CCTC	7 cut(s)	241, 336, 411, 527, 795, 881, 987
MseI	TTAA	7 cut(s)	80, 183, 429, 641, 785, 816, 947
MspI	CCGG	1 cut(s)	614
MspR9I	CCNGG	1 cut(s)	615
MunI	CAATTG	1 cut(s)	229
MwoI	GCNNNNNNNGC	2 cut(s)	59, 68
NciI	CCSGG	1 cut(s)	615
NcoI	CCATGG	1 cut(s)	510
NdeII	GATC	7 cut(s)	9, 154, 187, 268, 790, 968, 1003
NlaIII	CATG	5 cut(s)	162, 284, 392, 514, 850
NlaIV	GGNNCC	4 cut(s)	394, 415, 750, 970
NmuCI	GTSAC	1 cut(s)	217
PaqCI	CACCTGC	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	727, 985
PkrI	GCNGC	3 cut(s)	70, 227, 908
PshBI	ATTAAT	3 cut(s)	80, 183, 816
PspFI	CCCAGC	1 cut(s)	563
PspN4I	GGNNCC	4 cut(s)	394, 415, 750, 970
PspPI	GGNCC	1 cut(s)	749
PstNI	CAGNNNCTG	1 cut(s)	1034
PsuI	RGATCY	1 cut(s)	968
RsaI	GTAC	4 cut(s)	96, 235, 265, 619
RsaNI	GTAC	4 cut(s)	95, 234, 264, 618
SaqAI	TTAA	7 cut(s)	80, 183, 429, 641, 785, 816, 947
SatI	GCNGC	3 cut(s)	69, 226, 907
Sau3AI	GATC	7 cut(s)	9, 154, 187, 268, 790, 968, 1003
Sau96I	GGNCC	1 cut(s)	749
ScaI	AGTACT	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	615
SduI	GDGCHC	1 cut(s)	416
SfcI	CTRYAG	1 cut(s)	1035
SinI	GGWCC	1 cut(s)	749
SpeI	ACTAGT	1 cut(s)	424
SsiI	CCGC	3 cut(s)	165, 225, 451
SspI	AATATT	4 cut(s)	203, 487, 814, 836
SspMI	CTAG	3 cut(s)	425, 722, 735
StyD4I	CCNGG	1 cut(s)	613
StyI	CCWWGG	3 cut(s)	57, 510, 542
TaqI	TCGA	2 cut(s)	76, 590
TatI	WGTACW	2 cut(s)	94, 263
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	727, 985
Tru1I	TTAA	7 cut(s)	80, 183, 429, 641, 785, 816, 947
Tru9I	TTAA	7 cut(s)	80, 183, 429, 641, 785, 816, 947
TscAI	CASTG	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	2 cut(s)	68, 906
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	3 cut(s)	17, 105, 999
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	749
VspI	ATTAAT	3 cut(s)	80, 183, 816
XapI	RAATTY	6 cut(s)	142, 310, 556, 765, 781, 955
XspI	CTAG	3 cut(s)	425, 722, 735
ZrmI	AGTACT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.