Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

23465998 .. 23476313

Gene Structure 10316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG210700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAATTACACGTTCTTCTTCTCTCGGCTTCTTGTTGGTTCTCTCTTGCTAGTTTTATCTGCGAGCTTTGCTTTCGGAGCTAATCGATTATCTCCAGATGAAAGACAAGCTTTAATGGACATCGGAAAGACACTCGGTAAGAAATGGGATTTCAGCGTAGATCCATGCAGCGGAGAACTTGGATGGATTAGTCCTTCGGATGACCAATACATGAATCAGGTCATCTGCGACAACTGTAGTACTACCTCCAGTACTATGGCCGATCAGATCTGCCATGTCACAAACATATCTTTGAAAGCTCAGAATTTGGCAGGAACACTCCCACCAGAGTTGAAGAGGCTCACCTATCTACAAACAATAGATCTCACCCGCAACTATTTGAGTGGCACCATCCCTCGAGAATGGGGCTCCCTGCCGCTAGCTACCATTTCCCTTGTTGGAAACCGTTTGACAGGTTCTATCCCCATTGAGATCGGAAACATTAGCACCCTGCAAAGTTTGGACATCACTTCCAATAATTTTTCAGGACTTCCTCCGGAGCTTGGGAATTTAACCAGCATAAAGAAAATGTACGACATCTGGCCTATTGGAAATTTCGCCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

201

Amino Acids

22.09

Weight (kDa)

5.35

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	386
AccIII	TCCGGA	1 cut(s)	535
AciI	CCGC	3 cut(s)	171, 370, 416
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	3 cut(s)	304, 547, 592
AfaI	GTAC	3 cut(s)	241, 253, 572
AfiI	CCNNNNNNNGG	2 cut(s)	170, 542
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	2 cut(s)	295, 334
AluBI	AGCT	6 cut(s)	66, 80, 110, 299, 422, 541
AluI	AGCT	6 cut(s)	66, 80, 110, 299, 422, 541
AlwI	GGATC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	396
Aor13HI	TCCGGA	1 cut(s)	535
AoxI	GGCC	2 cut(s)	258, 581
ApeKI	GCWGC	1 cut(s)	168
ApoI	RAATTY	3 cut(s)	304, 547, 592
AsuHPI	GGTGA	2 cut(s)	334, 358
AsuNHI	GCTAGC	1 cut(s)	418
AvaI	CYCGRG	1 cut(s)	396
BanI	GGYRCC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	2 cut(s)	177, 398
BfaI	CTAG	2 cut(s)	50, 419
BfmI	CTRYAG	1 cut(s)	235
BglII	AGATCT	2 cut(s)	267, 361
BisI	GCNGC	2 cut(s)	169, 416
BlsI	GCNGC	2 cut(s)	170, 417
BmcAI	AGTACT	2 cut(s)	241, 253
BmeT110I	CYCGRG	1 cut(s)	396
BmiI	GGNNCC	2 cut(s)	388, 409
BmtI	GCTAGC	1 cut(s)	422
BpmI	CTGGAG	2 cut(s)	78, 232
Bsa29I	ATCGAT	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 542
Bse1I	ACTGG	1 cut(s)	249
BseAI	TCCGGA	1 cut(s)	535
BseCI	ATCGAT	1 cut(s)	85
BseGI	GGATG	3 cut(s)	188, 205, 390
BseLI	CCNNNNNNNGG	2 cut(s)	170, 542
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	180
BshFI	GGCC	2 cut(s)	260, 583
BshNI	GGYRCC	1 cut(s)	386
BshVI	ATCGAT	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	536
BslI	CCNNNNNNNGG	2 cut(s)	170, 542
BsnI	GGCC	2 cut(s)	260, 583
BsoBI	CYCGRG	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp13I	TCCGGA	1 cut(s)	535
Bsp143I	GATC	5 cut(s)	160, 262, 267, 361, 471
BspACI	CCGC	3 cut(s)	171, 370, 416
BspANI	GGCC	2 cut(s)	260, 583
BspCNI	CTCAG	1 cut(s)	313
BspDI	ATCGAT	1 cut(s)	85
BspEI	TCCGGA	1 cut(s)	535
BspLI	GGNNCC	2 cut(s)	388, 409
BspOI	GCTAGC	1 cut(s)	422
BspPI	GGATC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	249
BssMI	GATC	5 cut(s)	160, 262, 267, 361, 471
Bst4CI	ACNGT	2 cut(s)	236, 446
Bst6I	CTCTTC	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	64, 420
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	3 cut(s)	188, 205, 390
BstKTI	GATC	5 cut(s)	163, 265, 270, 364, 474
BstMBI	GATC	5 cut(s)	160, 262, 267, 361, 471
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 77
BstSFI	CTRYAG	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	180
BstX2I	RGATCY	3 cut(s)	160, 267, 361
BstXI	CCANNNNNNTGG	1 cut(s)	256
BstYI	RGATCY	3 cut(s)	160, 267, 361
Bsu15I	ATCGAT	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	260, 583
BsuTUI	ATCGAT	1 cut(s)	85
BtsCI	GGATG	3 cut(s)	188, 205, 390
Cac8I	GCNNGC	2 cut(s)	64, 420
ClaI	ATCGAT	1 cut(s)	85
Csp6I	GTAC	3 cut(s)	240, 252, 571
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	3 cut(s)	165, 211, 275
CviQI	GTAC	3 cut(s)	240, 252, 571
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	5 cut(s)	162, 264, 269, 363, 473
DpnII	GATC	5 cut(s)	160, 262, 267, 361, 471
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	410
Eco88I	CYCGRG	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	410
FaeI	CATG	3 cut(s)	168, 214, 278
FaiI	YATR	6 cut(s)	166, 212, 257, 276, 287, 560
FalI	AAGNNNNNCTT	2 cut(s)	94, 126
FatI	CATG	3 cut(s)	164, 210, 274
FauI	CCCGC	1 cut(s)	377
Fnu4HI	GCNGC	2 cut(s)	169, 416
FokI	GGATG	3 cut(s)	195, 212, 377
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	2 cut(s)	169, 416
FspBI	CTAG	2 cut(s)	50, 419
GluI	GCNGC	2 cut(s)	169, 416
GsuI	CTGGAG	2 cut(s)	78, 232
HaeIII	GGCC	2 cut(s)	260, 583
HapII	CCGG	1 cut(s)	536
Hin1II	CATG	3 cut(s)	168, 214, 278
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	2 cut(s)	334, 358
Hpy188I	TCNGA	6 cut(s)	77, 125, 199, 267, 303, 476
Hpy188III	TCNNGA	4 cut(s)	95, 398, 525, 536
HpyAV	CCTTC	1 cut(s)	204
HpyCH4III	ACNGT	2 cut(s)	236, 446
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	2 cut(s)	168, 493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 77
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	168, 214, 278
Kpn2I	TCCGGA	1 cut(s)	535
Kzo9I	GATC	5 cut(s)	160, 262, 267, 361, 471
LmnI	GCTCC	3 cut(s)	77, 413, 538
Lsp1109I	GCAGC	1 cut(s)	180
MaeI	CTAG	2 cut(s)	50, 419
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	5 cut(s)	162, 264, 269, 363, 473
MboI	GATC	5 cut(s)	160, 262, 267, 361, 471
MboII	GAAGA	3 cut(s)	7, 10, 346
MflI	RGATCY	3 cut(s)	160, 267, 361
MhlI	GDGCHC	1 cut(s)	410
MluCI	AATT	5 cut(s)	4, 304, 517, 547, 592
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	4 cut(s)	256, 330, 405, 543
MroI	TCCGGA	1 cut(s)	535
MseI	TTAA	2 cut(s)	113, 551
MspA1I	CMGCKG	1 cut(s)	171
MspI	CCGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	2 cut(s)	68, 77
NdeII	GATC	5 cut(s)	160, 262, 267, 361, 471
NheI	GCTAGC	1 cut(s)	418
NlaIII	CATG	3 cut(s)	168, 214, 278
NlaIV	GGNNCC	2 cut(s)	388, 409
NmeAIII	GCCGAG	1 cut(s)	4
NmuCI	GTSAC	1 cut(s)	277
PaeR7I	CTCGAG	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	214
PkrI	GCNGC	2 cut(s)	170, 417
PspN4I	GGNNCC	2 cut(s)	388, 409
PsuI	RGATCY	3 cut(s)	160, 267, 361
RsaI	GTAC	3 cut(s)	241, 253, 572
RsaNI	GTAC	3 cut(s)	240, 252, 571
SaqAI	TTAA	2 cut(s)	113, 551
SatI	GCNGC	2 cut(s)	169, 416
Sau3AI	GATC	5 cut(s)	160, 262, 267, 361, 471
ScaI	AGTACT	2 cut(s)	241, 253
SduI	GDGCHC	1 cut(s)	410
SfcI	CTRYAG	1 cut(s)	235
Sfr274I	CTCGAG	1 cut(s)	396
SlaI	CTCGAG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
Sse9I	AATT	5 cut(s)	4, 304, 517, 547, 592
SsiI	CCGC	3 cut(s)	171, 370, 416
SspMI	CTAG	2 cut(s)	50, 419
TaaI	ACNGT	2 cut(s)	236, 446
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	2 cut(s)	85, 397
TasI	AATT	5 cut(s)	4, 304, 517, 547, 592
TatI	WGTACW	2 cut(s)	239, 251
TauI	GCSGC	1 cut(s)	418
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	2 cut(s)	113, 551
Tru9I	TTAA	2 cut(s)	113, 551
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	1 cut(s)	168
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	3 cut(s)	17, 114, 227
XapI	RAATTY	3 cut(s)	304, 547, 592
XhoI	CTCGAG	1 cut(s)	396
XspI	CTAG	2 cut(s)	50, 419
ZrmI	AGTACT	2 cut(s)	241, 253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.