Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002057

Physical Location & Seq

Genomic Coordinates Reverse (-)

23908527 .. 23953540

Gene Structure 45014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG207600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCCATCAAGTCTCAGATCTATGACGTGTCTCAAAGGTATTCTGCTGATCTATCTTCTACCTTCAAACCTGTTCCATGCTCCCATGACCGTAGAGAAAATCAATATCATTTTTATGGCGTAAAAGTAACGGCGCGGGCATCTCTACCGGGGGCACATTACTATATACCAACTCAAGTATGGGATGTAAAGCGTCGTGGTGTTGAAGCTTTGAAGGACATAGCAAAGACGCTGGGGAAGACGGACTGGAATTTCAGCGCTGATCCCTGTGGCAACGATTACGGGTGGGCTAATCTGAACCCGGTAAAAGGATCCGAAGATGCCGTCACCTGCAATTGTACCTTAGTTCCCAATTCCACTGTCTGCCACGTCACCAGCATGAGAAATGGGCAGTACGAAACTAGGAAAGCCACACATTTGCGGTGCAGAGCAAACATTTATGCTGGTTCATTTGTAATTCCTCTGTTCCAGTGGATTGTCTTGCTCAAGAGAAATGCTGACATAGAAAAAAGAAATCTAGCCAGACAGCAATTTGCTCAACACATTGAATTGTCTGATCTCTTACTAAGACGAAAGATGATTGAGTCGGCTCTGACTGGGGATGAAGGAACAAAGAATGTTGTGCCGCCACCGTCGTTGTCGGTGGTGTGTGATGGAGTGCACAGGGTGAATCTGTTTGCAGGGTTCAACCTGTCGAACTTTTTGGAGAGTTGGAATGCCCGGTTGCCAACCCAGCTGGTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.98

Weight (kDa)

9.17

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14840
malus_domestica	MD03G1246400.v1.1 MD11G1267600.v1.1 MD11G1268200.v1.1 MD11G1268400.v1.1
pyrus_communis	pycom11g23560 pycom11g23570
rosa_chinensis	RchiOBHm_Chr0c40g0503401 RchiOBHm_Chr5g0029681 RchiOBHm_Chr5g0029791 RchiOBHm_Chr5g0029861
rosa_multiflora	Rmu_sc0003368.1_g000039 Rmu_sc0003368.1_g000049 Rmu_sc0003368.1_g000050 Rmu_sc0023717.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050130 Rroxscaffold_1G00050140 Rroxscaffold_1G00050160 Rroxscaffold_1G00050210 Rroxscaffold_1G00050250
rosa_samantha	Rh2AG480600 Rh2CG466900 Rh5AG207900 Rh5AG208100 Rh5AG208700 Rh5AG209000 Rh5BG206800 Rh5BG207200 Rh5BG207500 Rh5BG207600 Rh5CG229300 Rh5CG230800 Rh5DG210300 Rh5DG210400 Rh5DG210600 Rh5DG210700 Rh5DG210800 Rh5DG210900 Rh5DG211100 Rh5DG211500 Rh5DG211700 Rh5DG212200 Rh7CG365100
rosa_wichuraiana	Rw0G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	338
AccII	CGCG	1 cut(s)	136
AciI	CCGC	3 cut(s)	136, 421, 626
AclWI	GGATC	3 cut(s)	257, 306, 319
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	250
AdeI	CACNNNGTG	1 cut(s)	667
AfaI	GTAC	2 cut(s)	340, 395
AfeI	AGCGCT	1 cut(s)	259
AfiI	CCNNNNNNNGG	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	5 cut(s)	67, 206, 214, 548, 688
AjiI	CACGTC	2 cut(s)	28, 370
AluBI	AGCT	2 cut(s)	209, 736
AluI	AGCT	2 cut(s)	209, 736
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	2 cut(s)	18, 36
Alw44I	GTGCAC	1 cut(s)	659
AlwI	GGATC	3 cut(s)	257, 306, 319
Aor51HI	AGCGCT	1 cut(s)	259
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	659
ApoI	RAATTY	1 cut(s)	250
ArsI	GACNNNNNNTTYG	2 cut(s)	309, 341
AspLEI	GCGC	2 cut(s)	136, 260
AsuC2I	CCSGG	3 cut(s)	150, 302, 721
AsuHPI	GGTGA	3 cut(s)	319, 364, 679
BaeGI	GKGCMC	2 cut(s)	157, 663
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	663
BccI	CCATC	2 cut(s)	14, 647
BceAI	ACGGC	2 cut(s)	147, 308
BcnI	CCSGG	3 cut(s)	150, 302, 721
BcoDI	GTCTC	2 cut(s)	18, 36
BfaI	CTAG	2 cut(s)	402, 518
BfoI	RGCGCY	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	338
BglII	AGATCT	1 cut(s)	18
BisI	GCNGC	1 cut(s)	626
BlsI	GCNGC	1 cut(s)	627
Bme1390I	CCNGG	3 cut(s)	150, 302, 721
BmgBI	CACGTC	2 cut(s)	28, 370
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	3 cut(s)	150, 302, 721
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	2 cut(s)	149, 310
BmuI	ACTGGG	1 cut(s)	606
BpiI	GAAGAC	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	159, 470
BpuMI	CCSGG	3 cut(s)	150, 302, 721
BsaJI	CCNNGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	3 cut(s)	251, 469, 601
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	2 cut(s)	190, 607
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	3 cut(s)	251, 469, 601
BseSI	GKGCMC	2 cut(s)	157, 663
BseYI	CCCAGC	2 cut(s)	232, 732
BsgI	GTGCAG	1 cut(s)	445
Bsh1236I	CGCG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	663
BsiSI	CCGG	3 cut(s)	149, 302, 721
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	2 cut(s)	18, 36
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	157, 663
Bsp143I	GATC	5 cut(s)	18, 49, 262, 311, 556
BspACI	CCGC	3 cut(s)	136, 421, 626
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	338
BspPI	GGATC	3 cut(s)	257, 306, 319
BsrI	ACTGG	3 cut(s)	251, 469, 601
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	5 cut(s)	18, 49, 262, 311, 556
Bst4CI	ACNGT	3 cut(s)	92, 361, 633
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	3 cut(s)	15, 343, 566
BstF5I	GGATG	2 cut(s)	190, 607
BstFNI	CGCG	1 cut(s)	136
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	136, 260
BstKTI	GATC	5 cut(s)	21, 52, 265, 314, 559
BstMAI	GTCTC	2 cut(s)	18, 36
BstMBI	GATC	5 cut(s)	18, 49, 262, 311, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	733
BstSCI	CCNGG	3 cut(s)	148, 300, 719
BstSLI	GKGCMC	2 cut(s)	157, 663
BstUI	CGCG	1 cut(s)	136
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	2 cut(s)	18, 311
BstYI	RGATCY	2 cut(s)	18, 311
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	2 cut(s)	28, 370
BtsCI	GGATG	2 cut(s)	190, 607
BtsIMutI	CAGTG	2 cut(s)	357, 476
BveI	ACCTGC	1 cut(s)	338
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	2 cut(s)	136, 260
CseI	GACGC	2 cut(s)	182, 238
Csp6I	GTAC	2 cut(s)	339, 394
CspCI	CAANNNNNGTGG	2 cut(s)	618, 653
CviAII	CATG	4 cut(s)	78, 86, 379, 742
CviJI	RGCY	7 cut(s)	5, 209, 290, 410, 521, 590, 736
CviKI_1	RGCY	7 cut(s)	5, 209, 290, 410, 521, 590, 736
CviQI	GTAC	2 cut(s)	339, 394
DdeI	CTNAG	3 cut(s)	15, 343, 566
DpnI	GATC	5 cut(s)	20, 51, 264, 313, 558
DpnII	GATC	5 cut(s)	18, 49, 262, 311, 556
DraIII	CACNNNGTG	1 cut(s)	667
EaeI	YGGCCR	1 cut(s)	3
Eco47III	AGCGCT	1 cut(s)	259
FaeI	CATG	4 cut(s)	81, 89, 382, 745
FatI	CATG	4 cut(s)	77, 85, 378, 741
FauI	CCCGC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	626
FokI	GGATG	2 cut(s)	197, 614
Fsp4HI	GCNGC	1 cut(s)	626
FspBI	CTAG	2 cut(s)	402, 518
GlaI	GCGC	2 cut(s)	135, 259
GluI	GCNGC	1 cut(s)	626
GsaI	CCCAGC	2 cut(s)	236, 736
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	149, 302, 721
HgaI	GACGC	2 cut(s)	182, 238
HhaI	GCGC	2 cut(s)	136, 260
Hin1II	CATG	4 cut(s)	81, 89, 382, 745
Hin6I	GCGC	2 cut(s)	134, 258
HinP1I	GCGC	2 cut(s)	134, 258
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	2 cut(s)	584, 670
HpaII	CCGG	3 cut(s)	149, 302, 721
HphI	GGTGA	3 cut(s)	319, 364, 679
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	5 cut(s)	18, 297, 316, 556, 594
Hpy188III	TCNNGA	1 cut(s)	487
Hpy8I	GTNNAC	1 cut(s)	661
Hpy99I	CGWCG	2 cut(s)	198, 637
HpyAV	CCTTC	3 cut(s)	73, 208, 599
HpyCH4III	ACNGT	3 cut(s)	92, 361, 633
HpyCH4IV	ACGT	2 cut(s)	27, 369
HpyCH4V	TGCA	4 cut(s)	333, 426, 661, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	733
HpyF3I	CTNAG	3 cut(s)	15, 343, 566
HpySE526I	ACGT	2 cut(s)	27, 369
Hsp92II	CATG	4 cut(s)	81, 89, 382, 745
HspAI	GCGC	2 cut(s)	134, 258
Kzo9I	GATC	5 cut(s)	18, 49, 262, 311, 556
LmnI	GCTCC	1 cut(s)	86
LweI	GCATC	2 cut(s)	149, 310
MaeI	CTAG	2 cut(s)	402, 518
MaeII	ACGT	2 cut(s)	27, 369
MaeIII	GTNAC	3 cut(s)	127, 325, 370
MalI	GATC	5 cut(s)	20, 51, 264, 313, 558
MboI	GATC	5 cut(s)	18, 49, 262, 311, 556
MboII	GAAGA	3 cut(s)	48, 250, 329
MfeI	CAATTG	1 cut(s)	334
MflI	RGATCY	2 cut(s)	18, 311
MhlI	GDGCHC	2 cut(s)	157, 663
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	250, 334, 352, 456, 530, 548
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	1 cut(s)	692
MnlI	CCTC	1 cut(s)	471
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	114, 377
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	736
MspI	CCGG	3 cut(s)	149, 302, 721
MspR9I	CCNGG	3 cut(s)	150, 302, 721
MunI	CAATTG	1 cut(s)	334
Mva1269I	GAATGC	1 cut(s)	721
MvnI	CGCG	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	733
NciI	CCSGG	3 cut(s)	150, 302, 721
NdeII	GATC	5 cut(s)	18, 49, 262, 311, 556
NlaIII	CATG	4 cut(s)	81, 89, 382, 745
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	2 cut(s)	325, 370
PaqCI	CACCTGC	1 cut(s)	338
PctI	GAATGC	1 cut(s)	721
PfeI	GAWTC	1 cut(s)	670
PkrI	GCNGC	1 cut(s)	627
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
PspFI	CCCAGC	2 cut(s)	232, 732
PspN4I	GGNNCC	1 cut(s)	313
PsuI	RGATCY	2 cut(s)	18, 311
PvuII	CAGCTG	1 cut(s)	736
RsaI	GTAC	2 cut(s)	340, 395
RsaNI	GTAC	2 cut(s)	339, 394
RseI	CAYNNNNRTG	2 cut(s)	114, 377
SatI	GCNGC	1 cut(s)	626
Sau3AI	GATC	5 cut(s)	18, 49, 262, 311, 556
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	3 cut(s)	150, 302, 721
SduI	GDGCHC	2 cut(s)	157, 663
SfaNI	GCATC	2 cut(s)	149, 310
SmiMI	CAYNNNNRTG	2 cut(s)	114, 377
SmlI	CTYRAG	2 cut(s)	174, 485
SmoI	CTYRAG	2 cut(s)	174, 485
Sse9I	AATT	6 cut(s)	250, 334, 352, 456, 530, 548
SsiI	CCGC	3 cut(s)	136, 421, 626
SspMI	CTAG	2 cut(s)	402, 518
StyD4I	CCNGG	3 cut(s)	148, 300, 719
TaaI	ACNGT	3 cut(s)	92, 361, 633
TaiI	ACGT	2 cut(s)	30, 372
TaqI	TCGA	1 cut(s)	695
TasI	AATT	6 cut(s)	250, 334, 352, 456, 530, 548
TauI	GCSGC	1 cut(s)	628
TfiI	GAWTC	1 cut(s)	670
TscAI	CASTG	2 cut(s)	364, 476
TseFI	GTSAC	2 cut(s)	325, 370
Tsp45I	GTSAC	2 cut(s)	325, 370
TspDTI	ATGAA	2 cut(s)	438, 618
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	2 cut(s)	364, 476
VneI	GTGCAC	1 cut(s)	659
XapI	RAATTY	1 cut(s)	250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	177
XspI	CTAG	2 cut(s)	402, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.