Rw5G018940

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000292
Physical Location & Seq
Reverse (-)
24477454 .. 24478976
1523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G018940.1

Sequence Viewer

Length: 918 bp
ATGTTAGGGAGCTATATAATAAACCAACTCCTTTTGTTTTGGGGTTTATTCCTTTTAGTTGTTCTCTTTAATAGCTACAAAGCTTTCTTTGCTTTCATTCTAGACTCGTACTTTCTCCGTATAAATTGTGGTGGAAATGTTCATAAAGATATCAGCACATCCATAACATATGAAGCAGATATCAATCAAGGTGGACCTTCATCATTTTATGAAAGCAATAGCAACTGGGGGTTTAGCAGCACTGGTTACTACCCTGATGATGACAGTTCTCAAGACATCTTTATTGTGTCTAATATATCTACACTCTCTATGCCTGATCGTCAACTGTACATGACTGCACGCGTTTCACCCATCTCTCTAACTTATTTTGGGTTTTGCCTGATGAATGGAAACTACACAGTGAAGCTCCATTTTGCAGAGATAATGTTTACAAATGACAAAACATATCGTAGCTTGGGAAGGCGTATATTTGATGTTTACATTCAGGGGAAACGAGTGGAGAAGGATTTTAATATTGCGGATGTAGCAGGTGGGAATAGTAAATTAGTCATAAGAAACTATACTGCTTCTGTAACAACGCGTACCTTGGAGATTCGTTTCTTTTGGAATGGGAAAGGAACACAGGCTATCCCTAAAAGAGGAGTCTATGGTCCTCTTATATCAGCCATTTCTGTAGACCCAAATTTTACACCCCCGAAAGAACCCTCGCAAGGAGGTGGAAGTGGAATATCCGCAGGTGAAGTGGTTGGAATTGTGGCTGGAGGAGTGTTCATAATATTAGAGATTTTATGTATTCTTTGGTGGAAAGGCTTCATAGGACCAGCAAATACTTTGGAACAAGGTATTTCTAGTTGTTTCTGTTATCTTGGTTTCTTTTTTAAATTTCTTTTATATTTGTTATGTTATTTTTGTAGCTAA

Protein Analysis

305

Amino Acids

34.1

Weight (kDa)

7.5

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 38 - 223 1e-44 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 518, 725
Acc36I ACCTGC 2 cut(s) 518, 725
AccI GTMKAC 1 cut(s) 675
AccII CGCG 2 cut(s) 342, 580
AciI CCGC 2 cut(s) 518, 732
AcsI RAATTY 2 cut(s) 682, 881
AfaI GTAC 3 cut(s) 110, 329, 583
AfiI CCNNNNNNNGG 2 cut(s) 638, 710
AflIII ACRYGT 2 cut(s) 340, 578
AluBI AGCT 6 cut(s) 12, 75, 83, 406, 453, 915
AluI AGCT 6 cut(s) 12, 75, 83, 406, 453, 915
ApeKI GCWGC 1 cut(s) 237
ApoI RAATTY 2 cut(s) 682, 881
Asp700I GAANNNNTTC 1 cut(s) 809
AspS9I GGNCC 3 cut(s) 194, 650, 818
AsuHPI GGTGA 2 cut(s) 339, 749
AvaII GGWCC 3 cut(s) 194, 650, 818
BbvI GCAGC 1 cut(s) 249
BccI CCATC 1 cut(s) 359
BfaI CTAG 2 cut(s) 101, 849
BfmI CTRYAG 1 cut(s) 672
BfuAI ACCTGC 2 cut(s) 518, 725
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
Bme18I GGWCC 3 cut(s) 194, 650, 818
BmgT120I GGNCC 3 cut(s) 194, 650, 818
BmrI ACTGGG 1 cut(s) 235
BmuI ACTGGG 1 cut(s) 235
BpmI CTGGAG 1 cut(s) 780
BpuEI CTTGAG 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 585
Bsc4I CCNNNNNNNGG 2 cut(s) 638, 710
Bse1I ACTGG 2 cut(s) 230, 247
Bse8I GATNNNNATC 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 585
BseGI GGATG 2 cut(s) 158, 526
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 2 cut(s) 638, 710
BseNI ACTGG 2 cut(s) 230, 247
BseRI GAGGAG 2 cut(s) 654, 777
BseXI GCAGC 1 cut(s) 249
BsgI GTGCAG 1 cut(s) 321
Bsh1236I CGCG 2 cut(s) 342, 580
BslI CCNNNNNNNGG 2 cut(s) 638, 710
Bsp1407I TGTACA 1 cut(s) 327
Bsp143I GATC 1 cut(s) 316
BspACI CCGC 2 cut(s) 518, 732
BspFNI CGCG 2 cut(s) 342, 580
BspMI ACCTGC 2 cut(s) 518, 725
BsrGI TGTACA 1 cut(s) 327
BsrI ACTGG 2 cut(s) 230, 247
BssECI CCNNGG 1 cut(s) 585
BssMI GATC 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 585
Bst4CI ACNGT 3 cut(s) 266, 327, 400
BstAUI TGTACA 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 340
BstENI CCTNNNNNAGG 1 cut(s) 636
BstF5I GGATG 2 cut(s) 158, 526
BstFNI CGCG 2 cut(s) 342, 580
BstKTI GATC 1 cut(s) 319
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 2 cut(s) 89, 524
BstSFI CTRYAG 1 cut(s) 672
BstUI CGCG 2 cut(s) 342, 580
BstV1I GCAGC 1 cut(s) 249
BtsCI GGATG 2 cut(s) 158, 526
BtsIMutI CAGTG 2 cut(s) 240, 405
BveI ACCTGC 2 cut(s) 518, 725
Cac8I GCNNGC 1 cut(s) 340
Cfr13I GGNCC 3 cut(s) 194, 650, 818
Csp6I GTAC 3 cut(s) 109, 328, 582
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 1 cut(s) 331
CviQI GTAC 3 cut(s) 109, 328, 582
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
DraI TTTAAA 1 cut(s) 880
Eco130I CCWWGG 1 cut(s) 585
Eco32I GATATC 2 cut(s) 151, 181
Eco47I GGWCC 3 cut(s) 194, 650, 818
EcoNI CCTNNNNNAGG 1 cut(s) 636
EcoRV GATATC 2 cut(s) 151, 181
EcoT14I CCWWGG 1 cut(s) 585
ErhI CCWWGG 1 cut(s) 585
FaeI CATG 1 cut(s) 334
FatI CATG 1 cut(s) 330
FauNDI CATATG 1 cut(s) 169
FblI GTMKAC 1 cut(s) 675
Fnu4HI GCNGC 1 cut(s) 238
FokI GGATG 2 cut(s) 145, 533
Fsp4HI GCNGC 1 cut(s) 238
FspBI CTAG 2 cut(s) 101, 849
GluI GCNGC 1 cut(s) 238
GsuI CTGGAG 1 cut(s) 780
Hin1II CATG 1 cut(s) 334
HincII GTYRAC 1 cut(s) 323
HindII GTYRAC 1 cut(s) 323
HindIII AAGCTT 1 cut(s) 81
HinfI GANTC 3 cut(s) 104, 592, 642
HphI GGTGA 2 cut(s) 339, 749
Hpy166II GTNNAC 5 cut(s) 194, 323, 429, 478, 676
Hpy188III TCNNGA 2 cut(s) 101, 272
Hpy8I GTNNAC 5 cut(s) 194, 323, 429, 478, 676
HpyAV CCTTC 3 cut(s) 207, 453, 496
HpyCH4III ACNGT 3 cut(s) 266, 327, 400
HpyCH4V TGCA 2 cut(s) 338, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 524
Hsp92II CATG 1 cut(s) 334
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 2 cut(s) 9, 411
Lsp1109I GCAGC 1 cut(s) 249
MaeI CTAG 2 cut(s) 101, 849
MaeIII GTNAC 2 cut(s) 245, 571
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MluCI AATT 5 cut(s) 124, 542, 682, 750, 881
MluI ACGCGT 2 cut(s) 340, 578
MlyI GAGTC 2 cut(s) 98, 651
MmeI TCCRAC 1 cut(s) 727
MnlI CCTC 5 cut(s) 632, 663, 707, 715, 755
MroXI GAANNNNTTC 1 cut(s) 809
MseI TTAA 3 cut(s) 69, 510, 879
MvnI CGCG 2 cut(s) 342, 580
MwoI GCNNNNNNNGC 2 cut(s) 89, 524
NdeI CATATG 1 cut(s) 169
NdeII GATC 1 cut(s) 316
NlaIII CATG 1 cut(s) 334
PaqCI CACCTGC 2 cut(s) 518, 725
PdmI GAANNNNTTC 1 cut(s) 809
PfeI GAWTC 1 cut(s) 592
PkrI GCNGC 1 cut(s) 239
PleI GAGTC 2 cut(s) 98, 650
PpsI GAGTC 2 cut(s) 98, 650
PspPI GGNCC 3 cut(s) 194, 650, 818
RsaI GTAC 3 cut(s) 110, 329, 583
RsaNI GTAC 3 cut(s) 109, 328, 582
SaqAI TTAA 3 cut(s) 69, 510, 879
SatI GCNGC 1 cut(s) 238
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 3 cut(s) 194, 650, 818
SchI GAGTC 2 cut(s) 98, 651
SfcI CTRYAG 1 cut(s) 672
SinI GGWCC 3 cut(s) 194, 650, 818
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse9I AATT 5 cut(s) 124, 542, 682, 750, 881
SsiI CCGC 2 cut(s) 518, 732
SspI AATATT 2 cut(s) 514, 777
SspMI CTAG 2 cut(s) 101, 849
StyI CCWWGG 1 cut(s) 585
TaaI ACNGT 3 cut(s) 266, 327, 400
TasI AATT 5 cut(s) 124, 542, 682, 750, 881
TatI WGTACW 1 cut(s) 327
TfiI GAWTC 1 cut(s) 592
Tru1I TTAA 3 cut(s) 69, 510, 879
Tru9I TTAA 3 cut(s) 69, 510, 879
TscAI CASTG 2 cut(s) 247, 405
TseI GCWGC 1 cut(s) 237
TspDTI ATGAA 8 cut(s) 85, 131, 186, 189, 225, 398, 760, 802
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 2 cut(s) 247, 405
VpaK11BI GGWCC 3 cut(s) 194, 650, 818
XagI CCTNNNNNAGG 1 cut(s) 636
XapI RAATTY 2 cut(s) 682, 881
XbaI TCTAGA 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 675
XmnI GAANNNNTTC 1 cut(s) 809
XspI CTAG 2 cut(s) 101, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.