pycom11g23730

leucine-rich repeat receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
26753235 .. 26754128
894 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g23730.3

Sequence Viewer

Length: 495 bp
ATGCACGGCGTTCAAGCAGATGGCACCATAATAGCTATTAAGCAGCTTTCTTCCAAATCAAAGCAAGGGAATCATGAATTTGTTAATGAGATTGGCATGATTTTTGCTCTGCAACACCCTTATCTTGTCAAGCTCCACGAATGTTGTATTGAAGGAAATCAATTATTGCTTGTCTATGAGTATCTGGAAAATAATAGCGTCGCTCATGCTTTCTTCAGGGCAGAAGAAAGTCATTTGAAGTTGGATTGGCCAACAAGGCACAAGATTTGTATTGGTACAGCAAGAGGTTTGGCTTATCTTCATGAGGAATCAAGATTGAAGGTCGTTCATAGAGACATCAAGGCTACTAATGTTTTTCTTGATAAAAATCTTAACCCGAAAATATCTGACTTTGGATTGGCCAAGCTTGATGAAGAGGATAATACTCATATTAGCACTCGTATTGCTGGAACTTATGGATACATGGCGCCCGAATATGCAATGCGGGTTATCTGA

Protein Analysis

165

Amino Acids

18.66

Weight (kDa)

6.54

Isoelectric Point (pI)

33.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 23, 466
AciI CCGC 1 cut(s) 484
AcoI YGGCCR 2 cut(s) 248, 399
AcsI RAATTY 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 199
AcyI GRCGYC 1 cut(s) 467
AfaI GTAC 1 cut(s) 277
AgsI TTSAA 4 cut(s) 14, 152, 238, 319
AluBI AGCT 4 cut(s) 35, 46, 133, 406
AluI AGCT 4 cut(s) 35, 46, 133, 406
Alw26I GTCTC 1 cut(s) 327
AoxI GGCC 2 cut(s) 248, 399
ApeKI GCWGC 1 cut(s) 43
ApoI RAATTY 1 cut(s) 77
AspLEI GCGC 1 cut(s) 469
BalI TGGCCA 2 cut(s) 250, 401
BanI GGYRCC 2 cut(s) 23, 466
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 14
BceAI ACGGC 1 cut(s) 22
BciVI GTATCC 1 cut(s) 452
BcoDI GTCTC 1 cut(s) 327
BfoI RGCGCY 1 cut(s) 470
BfuI GTATCC 1 cut(s) 452
BglI GCCNNNNNGGC 1 cut(s) 256
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
BmiI GGNNCC 2 cut(s) 25, 468
BsaBI GATNNNNATC 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 467
Bse3DI GCAATG 1 cut(s) 486
Bse8I GATNNNNATC 1 cut(s) 366
BseJI GATNNNNATC 1 cut(s) 366
BseMI GCAATG 1 cut(s) 486
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 2 cut(s) 250, 401
BshNI GGYRCC 2 cut(s) 23, 466
BsmAI GTCTC 1 cut(s) 327
BsnI GGCC 2 cut(s) 250, 401
BspACI CCGC 1 cut(s) 484
BspANI GGCC 2 cut(s) 250, 401
BspHI TCATGA 2 cut(s) 73, 301
BspLI GGNNCC 2 cut(s) 25, 468
BspT107I GGYRCC 2 cut(s) 23, 466
BsrDI GCAATG 1 cut(s) 486
BssNI GRCGYC 1 cut(s) 467
Bst6I CTCTTC 1 cut(s) 408
BstACI GRCGYC 1 cut(s) 467
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 1 cut(s) 469
BstMAI GTCTC 1 cut(s) 327
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 55
BsuI GTATCC 1 cut(s) 452
BsuRI GGCC 2 cut(s) 250, 401
CciI TCATGA 2 cut(s) 73, 301
CfoI GCGC 1 cut(s) 469
CseI GACGC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 276
CspCI CAANNNNNGTGG 2 cut(s) 125, 160
CviAII CATG 5 cut(s) 74, 97, 206, 302, 463
CviJI RGCY 8 cut(s) 35, 46, 133, 250, 293, 344, 401, 406
CviKI_1 RGCY 8 cut(s) 35, 46, 133, 250, 293, 344, 401, 406
CviQI GTAC 1 cut(s) 276
DinI GGCGCC 1 cut(s) 468
EaeI YGGCCR 2 cut(s) 248, 399
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 199
EgeI GGCGCC 1 cut(s) 468
EheI GGCGCC 1 cut(s) 468
FaeI CATG 5 cut(s) 77, 100, 209, 305, 466
FatI CATG 5 cut(s) 73, 96, 205, 301, 462
FauI CCCGC 1 cut(s) 477
Fnu4HI GCNGC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 44
GlaI GCGC 1 cut(s) 468
GluI GCNGC 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 470
HaeIII GGCC 2 cut(s) 250, 401
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 469
Hin1I GRCGYC 1 cut(s) 467
Hin1II CATG 5 cut(s) 77, 100, 209, 305, 466
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 2 cut(s) 70, 308
Hpy188I TCNGA 2 cut(s) 388, 494
Hpy188III TCNNGA 5 cut(s) 74, 185, 302, 312, 359
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 2 cut(s) 146, 313
HpyCH4V TGCA 3 cut(s) 4, 112, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
Hsp92I GRCGYC 1 cut(s) 467
Hsp92II CATG 5 cut(s) 77, 100, 209, 305, 466
HspAI GCGC 1 cut(s) 467
KasI GGCGCC 1 cut(s) 466
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 3 cut(s) 170, 202, 432
Lsp1109I GCAGC 1 cut(s) 55
MboII GAAGA 5 cut(s) 42, 205, 236, 290, 425
MlsI TGGCCA 2 cut(s) 250, 401
MluCI AATT 2 cut(s) 77, 161
MluNI TGGCCA 2 cut(s) 250, 401
Mly113I GGCGCC 1 cut(s) 467
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 3 cut(s) 278, 298, 409
Mox20I TGGCCA 2 cut(s) 250, 401
MscI TGGCCA 2 cut(s) 250, 401
MseI TTAA 3 cut(s) 39, 84, 372
Msp20I TGGCCA 2 cut(s) 250, 401
MwoI GCNNNNNNNGC 1 cut(s) 256
NarI GGCGCC 1 cut(s) 467
NlaIII CATG 5 cut(s) 77, 100, 209, 305, 466
NlaIV GGNNCC 2 cut(s) 25, 468
PagI TCATGA 2 cut(s) 73, 301
PfeI GAWTC 2 cut(s) 70, 308
PkrI GCNGC 1 cut(s) 45
PluTI GGCGCC 1 cut(s) 470
PspN4I GGNNCC 2 cut(s) 25, 468
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SaqAI TTAA 3 cut(s) 39, 84, 372
SatI GCNGC 1 cut(s) 44
SetI ASST 6 cut(s) 37, 48, 135, 289, 324, 408
SfoI GGCGCC 1 cut(s) 468
Sse9I AATT 2 cut(s) 77, 161
SsiI CCGC 1 cut(s) 484
SspDI GGCGCC 1 cut(s) 466
TasI AATT 2 cut(s) 77, 161
TfiI GAWTC 2 cut(s) 70, 308
Tru1I TTAA 3 cut(s) 39, 84, 372
Tru9I TTAA 3 cut(s) 39, 84, 372
TseI GCWGC 1 cut(s) 43
TspDTI ATGAA 4 cut(s) 90, 290, 317, 426
XapI RAATTY 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.