Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000292

Physical Location & Seq

Genomic Coordinates Forward (+)

44068105 .. 44082575

Gene Structure 14471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG347800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCCGTGGCCTCCGCGTCCCCGGACAGGATCCAAGTCATTCTGCAGCAATACCCCGTCATCGAGCCCTCGCTGTCCAGATTCTCCAGAATTGGAATTTGCAGTTGCTCATCAGTGCTCCCTCGAAACTTCCCATGCCAAGAAGGAATAGCACTTCTTCTGAAAGAGAAAGGAAGTTTGCTAGACCTAGTCGATCCAAGGTTGGGATCAGATTTTAACAAGGAAGACGTGATGATTACCATCAATGTGGCTCTCCTTTGCTGTAATGTCTCTGCAGCACTTAGGCCTGCCATGTCTTCAGTGGTGAGCATGCTTGAAGGCAGGGCTCCTGTTGAGGTGTTAGTCTTAGATTCATGTGACTCATCTGATGAGATCAGTGAAATGAGGAAACATTTTGAATCCATTTACTCATTGGAAACCATCGGTGAGAGTTCTCAGAGACAAGCGATGTCAATCGAAGGGGGATGCACTTCCCCAACATCTTTTCAAGATCACTGTCCAATCAATCCTCATTCAGATTACTGGGAGAACAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

179

Amino Acids

19.64

Weight (kDa)

4.74

Isoelectric Point (pI)

60.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53420 AT3G14840
fragaria_vesca	FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica	MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica	Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis	pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis	RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata	RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora	Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa	Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha	Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana	Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	1 cut(s)	15
AclWI	GGATC	4 cut(s)	25, 38, 188, 214
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	96
AcuI	CTGAAG	1 cut(s)	282
AfiI	CCNNNNNNNGG	2 cut(s)	27, 203
AgsI	TTSAA	3 cut(s)	317, 398, 488
AjiI	CACGTC	1 cut(s)	229
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	2 cut(s)	274, 433
AlwI	GGATC	4 cut(s)	25, 38, 188, 214
AoxI	GGCC	3 cut(s)	3, 9, 284
ApeKI	GCWGC	2 cut(s)	46, 275
ApoI	RAATTY	1 cut(s)	96
AsuC2I	CCSGG	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	316, 437
BamHI	GGATCC	1 cut(s)	30
BanII	GRGCYC	2 cut(s)	69, 328
BbsI	GAAGAC	2 cut(s)	231, 288
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	58, 287
BccI	CCATC	2 cut(s)	248, 428
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	2 cut(s)	274, 433
BfaI	CTAG	2 cut(s)	182, 188
BfmI	CTRYAG	2 cut(s)	44, 273
BisI	GCNGC	2 cut(s)	47, 276
BlsI	GCNGC	2 cut(s)	48, 277
Bme1390I	CCNGG	1 cut(s)	23
BmgBI	CACGTC	1 cut(s)	229
BmiI	GGNNCC	2 cut(s)	32, 327
BmrFI	CCNGG	1 cut(s)	23
BmrI	ACTGGG	1 cut(s)	532
BmsI	GCATC	1 cut(s)	455
BmuI	ACTGGG	1 cut(s)	532
BpiI	GAAGAC	2 cut(s)	231, 288
BpmI	CTGGAG	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	23
BsaBI	GATNNNNATC	2 cut(s)	239, 452
BsaJI	CCNNGG	3 cut(s)	6, 21, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 203
Bse1I	ACTGG	1 cut(s)	527
Bse8I	GATNNNNATC	2 cut(s)	239, 452
BseDI	CCNNGG	3 cut(s)	6, 21, 197
BseGI	GGATG	1 cut(s)	470
BseJI	GATNNNNATC	2 cut(s)	239, 452
BseLI	CCNNNNNNNGG	2 cut(s)	27, 203
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	527
BseXI	GCAGC	2 cut(s)	58, 287
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	3 cut(s)	5, 11, 286
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	4
BslI	CCNNNNNNNGG	2 cut(s)	27, 203
BsmAI	GTCTC	2 cut(s)	274, 433
BsmFI	GGGAC	1 cut(s)	4
BsnI	GGCC	3 cut(s)	5, 11, 286
Bsp1286I	GDGCHC	3 cut(s)	69, 120, 328
Bsp143I	GATC	5 cut(s)	30, 193, 206, 372, 490
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	3 cut(s)	5, 11, 286
BspCNI	CTCAG	1 cut(s)	448
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	2 cut(s)	32, 327
BspMAI	CTGCAG	2 cut(s)	48, 277
BspPI	GGATC	4 cut(s)	25, 38, 188, 214
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	3 cut(s)	6, 21, 197
BssMI	GATC	5 cut(s)	30, 193, 206, 372, 490
BssT1I	CCWWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	497
BstC8I	GCNNGC	2 cut(s)	288, 311
BstDEI	CTNAG	3 cut(s)	281, 346, 435
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	470
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	5 cut(s)	33, 196, 209, 375, 493
BstMAI	GTCTC	2 cut(s)	274, 433
BstMBI	GATC	5 cut(s)	30, 193, 206, 372, 490
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	2 cut(s)	44, 273
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	58, 287
BstV2I	GAAGAC	2 cut(s)	231, 288
BstX2I	RGATCY	1 cut(s)	30
BstXI	CCANNNNNNTGG	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	5, 11, 286
BtgI	CCRYGG	1 cut(s)	6
BtgZI	GCGATG	1 cut(s)	461
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	470
BtsIMutI	CAGTG	4 cut(s)	120, 306, 382, 493
Cac8I	GCNNGC	2 cut(s)	288, 311
CseI	GACGC	1 cut(s)	6
CviAII	CATG	4 cut(s)	135, 292, 310, 354
CviJI	RGCY	6 cut(s)	5, 11, 67, 251, 286, 326
CviKI_1	RGCY	6 cut(s)	5, 11, 67, 251, 286, 326
DdeI	CTNAG	3 cut(s)	281, 346, 435
DpnI	GATC	5 cut(s)	32, 195, 208, 374, 492
DpnII	GATC	5 cut(s)	30, 193, 206, 372, 490
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	197
Eco147I	AGGCCT	1 cut(s)	286
Eco24I	GRGCYC	2 cut(s)	69, 328
Eco57I	CTGAAG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	197
EcoT38I	GRGCYC	2 cut(s)	69, 328
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	4 cut(s)	138, 295, 313, 357
FaiI	YATR	4 cut(s)	136, 293, 311, 355
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	4 cut(s)	134, 291, 309, 353
Fnu4HI	GCNGC	2 cut(s)	47, 276
FokI	GGATG	1 cut(s)	477
FriOI	GRGCYC	2 cut(s)	69, 328
Fsp4HI	GCNGC	2 cut(s)	47, 276
FspBI	CTAG	2 cut(s)	182, 188
GluI	GCNGC	2 cut(s)	47, 276
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	3 cut(s)	5, 11, 286
HapII	CCGG	1 cut(s)	23
HgaI	GACGC	1 cut(s)	6
Hin1II	CATG	4 cut(s)	138, 295, 313, 357
HinfI	GANTC	4 cut(s)	81, 350, 359, 398
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	316, 437
Hpy188I	TCNGA	5 cut(s)	162, 211, 367, 438, 517
Hpy188III	TCNNGA	3 cut(s)	78, 87, 488
HpyAV	CCTTC	3 cut(s)	137, 311, 452
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	4 cut(s)	46, 102, 275, 468
HpyF3I	CTNAG	3 cut(s)	281, 346, 435
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	138, 295, 313, 357
Kzo9I	GATC	5 cut(s)	30, 193, 206, 372, 490
LmnI	GCTCC	2 cut(s)	123, 331
LpnPI	CCDG	8 cut(s)	13, 36, 91, 100, 300, 307, 342, 508
Lsp1109I	GCAGC	2 cut(s)	58, 287
LweI	GCATC	1 cut(s)	455
MaeI	CTAG	2 cut(s)	182, 188
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	5 cut(s)	32, 195, 208, 374, 492
MboI	GATC	5 cut(s)	30, 193, 206, 372, 490
MboII	GAAGA	3 cut(s)	149, 236, 288
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	3 cut(s)	69, 120, 328
MluCI	AATT	3 cut(s)	90, 96, 535
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	6 cut(s)	22, 79, 132, 328, 378, 519
MseI	TTAA	2 cut(s)	216, 538
MslI	CAYNNNNRTG	1 cut(s)	245
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	17
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	5 cut(s)	30, 193, 206, 372, 490
NlaIII	CATG	4 cut(s)	138, 295, 313, 357
NlaIV	GGNNCC	2 cut(s)	32, 327
NmuCI	GTSAC	1 cut(s)	356
NspI	RCATGY	1 cut(s)	313
PaeI	GCATGC	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	286
PfeI	GAWTC	3 cut(s)	81, 350, 398
PflFI	GACNNNGTC	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	48, 277
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	32, 327
PstI	CTGCAG	2 cut(s)	48, 277
PsuI	RGATCY	1 cut(s)	30
PsyI	GACNNNGTC	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	216, 538
SatI	GCNGC	2 cut(s)	47, 276
Sau3AI	GATC	5 cut(s)	30, 193, 206, 372, 490
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	3 cut(s)	69, 120, 328
SetI	ASST	4 cut(s)	189, 203, 231, 339
SfaNI	GCATC	1 cut(s)	455
SfcI	CTRYAG	2 cut(s)	44, 273
SmiMI	CAYNNNNRTG	1 cut(s)	245
SphI	GCATGC	1 cut(s)	313
Sse9I	AATT	3 cut(s)	90, 96, 535
SseBI	AGGCCT	1 cut(s)	286
SsiI	CCGC	1 cut(s)	15
SspMI	CTAG	2 cut(s)	182, 188
StuI	AGGCCT	1 cut(s)	286
StyD4I	CCNGG	1 cut(s)	21
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	4 cut(s)	63, 124, 192, 456
TasI	AATT	3 cut(s)	90, 96, 535
TfiI	GAWTC	3 cut(s)	81, 350, 398
Tru1I	TTAA	2 cut(s)	216, 538
Tru9I	TTAA	2 cut(s)	216, 538
TscAI	CASTG	4 cut(s)	120, 306, 382, 500
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	2 cut(s)	46, 275
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	1 cut(s)	342
TspRI	CASTG	4 cut(s)	120, 306, 382, 500
Tth111I	GACNNNGTC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	96
XceI	RCATGY	1 cut(s)	313
XcmI	CCANNNNNNNNNTGG	2 cut(s)	298, 409
XspI	CTAG	2 cut(s)	182, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.