Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000292

Physical Location & Seq

Genomic Coordinates Reverse (-)

24608148 .. 24624501

Gene Structure 16354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G018980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3069 bp

ATGAACAACTACATGCTGTTGATCCATCGGCTTCTGGTTCATTCTCTCCTGCTACTTTGCTTTGCAACCTTGGCTTTCGGAGCTAATCGATTATCAGCCGATGAAGTACAAGCTTTGAAGGACATAGCAAAAACACTGGGGAAGACAAACTGGAATTTTAGTGCTGATCCATGCAGCGGAGAATATGGATGGATTACTCAAGCCGACAAATATTTTGCGAATAACGTCACCTGCGGCAATTGTTCGACTTCCGATGCGGCCAATGACACCAGAACTGATCAGATCTGCCATGTTGTTAGCATACTTCTGAAAGCTCAGAATTTGCCAGGAACACTTCCGTCAGAGTTGGCAAGGCTTCCCTATCTCCAACAAATTGACCTGGCCCGTAACTATCTGAATGGAACCATCCCTCCTCAATGGGGCTCCCTGCCACTAGTTAACATTTCTCTTGTTGGAAACCGCTTGACAGGTTCTATCCCCGTTGAGCTTGCAAATATTACCACACTGAAAAGTTTGACCATGGATTTCAATTATTTCTCTGGAGGTCTTCCTTGGCAACTTGGAAATTTTCCCAGCATAGAAACACTCATTCTTAGCTCGAACAATTTTACTGGGGAGTTGCCGGGTACATTTGAAAAGCTTACCAAATTAAAAGAGTTTCGGATTATGGACAATTCCTTTTCTGGGAAGATACCAAATTATATTCAAAACTGGACAAATCTTAGGAAACTAGGGATTCAGGCTAGTGGTTTGACGGGACCAATACCTTCTGGAATTTCTCTATTGACGAATTTAACTGATCTGAGAATTACTGACTTGAATGGACCTGAATCATCCTTTCCTGTACTTGAGAATTTGAAAAAATTGAAGACACTGATGTTGAGGAGTTGCAATATTAATGGACAGCTACCAGAATATTTCTCGGACATGACAGATTTGACAACTTTAGACCTCAGCTTCAACAAGCTAACTGGAAAAGTCCCAAGCAGCTTATTTGTTGCTCCAAATAATTTGGATTACATATTCTTAACTGGAAATTTGCTGAATGGATCCAAGCCTCTGTGGATTCAGGGAGACAATGCTGATCTTTCATATAACAATTTCACCCCAGAGCCTGTAGATTGTAAGCAAGCTGGCAGGAACTTGTTTGCAAGCTCTTCAAAGGGCAACAATTCAGCTGTTTCGTGTTTGAGCAATAAAACTACAACATGTTCAAAAAGTTGGTACTCTCTCAATATAAATTGTGGAGGAAGTGGAGTAACAGTTGATGGAAGAGCATATGATGAGGATACAGATGCAAGTGGACCTTCATTATATTACGAGAGCAGCACAAATTGGGTGTCAAGCAGCACTGGTTACTTCACTGATGATGACAGTTCTACAGACCACTTTACTTGGTCTAATTCATCTAGACTCTTGATTGCCAATGCTCAACTATACATGACTGCACGCCTTTCTCCCATCTCTCTAACTTATTATGGATTTTGTCTGGGAAATGGAAACTACACAGTACACCTCCATTTTGCAGAGATAATGTTTACAAATGGTCCAACATATAGCAGCTTAGGAAGGCGCATATTTGATGTTTACATTCAGGGCAAACGAGTGCTGCAGGATTTCAATATTGCTGATGAGGCAGGTGGGGTTGGTAAGGCAGTCATAAAAAACTATACTATTGCTGTAACTACTAATACCTTGGAGATCCGTTTCTTTTGGGCTGGGAAAGGAACCACAGGTATCCCTGTAAGAGGAGTTTATGGTCCTCTTATCTCCGCCATATCTGTATTTCCAGACTTTGAACCCCCACCAGAAACCCTGTCAGGACCAACAACATCATGGAGTTTCTCTATAGGTGCAGTGGTTGGATTTATGGCTGTAGGGGGAGTATTCTTTGTATTGCTGATTTTGGGTTATCTTTGGTGGAGAGGCTATCTAAGACGAGAAAGGACTTTGGAGCAAGATTTAAAAGGTGTTGACCTGCAAACGGGTAGATTTAGCTTGAGACAAATCAAAGATGCCACAGAAAACTTTGACATAGCCAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGCCAACTATCAGATGGCACCATAATTGCTGTTAAGCAGCTTTCTGCCAAATCACAGCAAGGAAATCGTGAGTTTGTGAATGAGATTGGCATGATTTCCGCTCTGCAACACCCTCATCTTGTCAAGCTCTATGGATGCTCCATTGAAGGAAATCAGTTGTTGCTTGTCTATGAGTACATGGAAAACAACAGTGTTGGACGCACTTTGTTTGGTGCAAAAGAAAGTCAGTTGAAGTTAGATTGGCCAACAAGGCACAGGATTTGTGTTGGTGTTGCAAAAGGTTTGGCTTACCTTCATGAAGAATCACGGTTGAAGATCGTTCATAGAGACATCAAAGCTACTAATGTGCTGCTTGATAAAAATCTTTGCCCGAAGATATCTGACTTTGGCCTAGCCAAGCTTGGTGAAGATGATAGTACCCATATAAGCACTAGGATTGCTGGAACTTATGGATATATGGCACCTGAATATGCAATGCGGGGTTATCTAACTGATAAAGCGGATGTGTATAGTTTTGGAATTCTTGTATTGGAAATGGTCAGTGGAAGGCGCAACACAACTTACCATTCCAAGGGAGAGTGCTTCTACATTCTTGATTGGGCACTTCTTCTGAAAGAGAAAGGAAGTTTGCTAGACCTAGTCGATCCAAGGTTGGGATCAGATTTTAACAAAGAAGACGTGATGATTACCATCAAGGTGGCTCTCCTTTGCTGTTATGTCTCTGCAGCACTTAGGCCTGCCATGTCTTCAGTGGTAAGCATGCTTGAAGGCAGGGCTCGTGTTGAGGAGTTAGTCTTTGATTCAAGTGCCTCATTTCATGAGATCAGTGAAATGAGGAAACATTTTGAATCTAATTACTCATTGGAGACCATCGATGAGAGTACTCAGAGACAAACAATGTCAATCGAAGGGGCGTGCACTTCATCTAAATCTGTTCAAGATCTCTATCCAATCAATCCTGATTCAGATTACTGGGAGAACAGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

1022

Amino Acids

113.02

Weight (kDa)

5.8

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	163 - 271	5.2e-06	Leucine-rich repeat region
LRR_8	PF13855	288 - 348	8.3e-08	Leucine rich repeat
Malectin	PF11721	410 - 593	7.8e-44	Malectin domain
PK_Tyr_Ser-Thr	PF07714	679 - 877	1e-45	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	679 - 878	1.7e-44	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53420 AT3G14840
fragaria_vesca	FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica	MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica	Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis	pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis	RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata	RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora	Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa	Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha	Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana	Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	239, 1628
Acc36I	ACCTGC	3 cut(s)	239, 1628, 1986
AccB1I	GGYRCC	2 cut(s)	2096, 2539
AccBSI	CCGCTC	1 cut(s)	2180
AciI	CCGC	8 cut(s)	177, 234, 257, 460, 1773, 2178, 2557, 2579
AclWI	GGATC	7 cut(s)	16, 161, 1044, 1057, 1696, 2717, 2743
AcoI	YGGCCR	2 cut(s)	258, 2321
AcsI	RAATTY	8 cut(s)	154, 319, 565, 774, 790, 853, 1036, 2598
AcuI	CTGAAG	1 cut(s)	2811
AfaI	GTAC	8 cut(s)	108, 628, 846, 1226, 1512, 2255, 2497, 2962
AfiI	CCNNNNNNNGG	7 cut(s)	176, 419, 684, 1748, 1984, 2650, 2732
AflIII	ACRYGT	1 cut(s)	1208
AhlI	ACTAGT	1 cut(s)	433
AjiI	CACGTC	1 cut(s)	2758
AjnI	CCWGG	2 cut(s)	325, 378
AjuI	GAANNNNNNNTTGG	2 cut(s)	2046, 2078
AloI	GAACNNNNNNTCC	2 cut(s)	394, 426
Alw21I	GWGCWC	1 cut(s)	2999
Alw26I	GTCTC	6 cut(s)	1068, 1996, 2400, 2803, 2939, 2962
Alw44I	GTGCAC	1 cut(s)	2995
AlwI	GGATC	7 cut(s)	16, 161, 1044, 1057, 1696, 2717, 2743
AlwNI	CAGNNNCTG	1 cut(s)	1115
AoxI	GGCC	6 cut(s)	258, 381, 2080, 2321, 2467, 2813
ApaLI	GTGCAC	1 cut(s)	2995
ApeKI	GCWGC	9 cut(s)	174, 987, 1326, 1347, 1560, 1609, 2116, 2428, 2804
ApoI	RAATTY	8 cut(s)	154, 319, 565, 774, 790, 853, 1036, 2598
ArsI	GACNNNNNNTTYG	4 cut(s)	197, 229, 1325, 1357
AseI	ATTAAT	1 cut(s)	897
AspLEI	GCGC	2 cut(s)	1575, 2631
AspS9I	GGNCC	9 cut(s)	382, 758, 824, 1304, 1547, 1760, 1823, 2066, 2080
AsuC2I	CCSGG	1 cut(s)	624
AsuHPI	GGTGA	3 cut(s)	220, 1096, 2495
AvaII	GGWCC	7 cut(s)	758, 824, 1304, 1547, 1760, 1823, 2066
BaeGI	GKGCMC	2 cut(s)	2683, 2999
BalI	TGGCCA	1 cut(s)	2323
BamHI	GGATCC	1 cut(s)	1049
BanI	GGYRCC	2 cut(s)	2096, 2539
BanII	GRGCYC	2 cut(s)	425, 2857
BauI	CACGAG	1 cut(s)	2856
BbsI	GAAGAC	5 cut(s)	149, 539, 875, 2760, 2817
Bbv12I	GWGCWC	1 cut(s)	2999
BbvCI	CCTCAGC	1 cut(s)	953
BbvI	GCAGC	9 cut(s)	186, 999, 1338, 1359, 1572, 1596, 2128, 2415, 2816
BccI	CCATC	8 cut(s)	33, 183, 413, 1262, 1469, 2087, 2777, 2957
BcgI	CGANNNNNNTGC	2 cut(s)	2126, 2160
BciT130I	CCWGG	2 cut(s)	327, 380
BciVI	GTATCC	2 cut(s)	1282, 1748
BclI	TGATCA	1 cut(s)	277
BcnI	CCSGG	1 cut(s)	624
BcoDI	GTCTC	6 cut(s)	1068, 1996, 2400, 2803, 2939, 2962
BcuI	ACTAGT	1 cut(s)	433
BfaI	CTAG	8 cut(s)	434, 731, 744, 1410, 2471, 2511, 2711, 2717
BfmI	CTRYAG	6 cut(s)	1116, 1380, 1610, 1848, 1875, 2802
BfuAI	ACCTGC	3 cut(s)	239, 1628, 1986
BfuI	GTATCC	2 cut(s)	1282, 1748
BglI	GCCNNNNNGGC	1 cut(s)	2329
BglII	AGATCT	2 cut(s)	282, 3019
BmcAI	AGTACT	1 cut(s)	2962
Bme1390I	CCNGG	3 cut(s)	327, 380, 624
Bme18I	GGWCC	7 cut(s)	758, 824, 1304, 1547, 1760, 1823, 2066
BmgBI	CACGTC	1 cut(s)	2758
BmgT120I	GGNCC	9 cut(s)	382, 758, 824, 1304, 1547, 1760, 1823, 2066, 2080
BmiI	GGNNCC	7 cut(s)	403, 424, 759, 1051, 1729, 2098, 2541
BmrFI	CCNGG	3 cut(s)	327, 380, 624
BmrI	ACTGGG	3 cut(s)	146, 621, 3061
BmsI	GCATC	4 cut(s)	244, 1285, 2005, 2204
BmuI	ACTGGG	3 cut(s)	146, 621, 3061
BpiI	GAAGAC	5 cut(s)	149, 539, 875, 2760, 2817
BpmI	CTGGAG	1 cut(s)	561
Bpu10I	CCTNAGC	2 cut(s)	953, 1564
BpuEI	CTTGAG	3 cut(s)	183, 869, 2020
BpuMI	CCSGG	1 cut(s)	624
Bsa29I	ATCGAT	2 cut(s)	88, 2952
BsaBI	GATNNNNATC	3 cut(s)	2439, 2768, 3024
BsaI	GGTCTC	1 cut(s)	2939
BsaJI	CCNNGG	6 cut(s)	69, 519, 551, 1695, 2649, 2726
BsaXI	ACNNNNNCTCC	4 cut(s)	394, 424, 1248, 1278
Bsc4I	CCNNNNNNNGG	7 cut(s)	176, 419, 684, 1748, 1984, 2650, 2732
Bse1I	ACTGG	8 cut(s)	141, 155, 616, 716, 976, 1036, 1357, 3056
Bse3DI	GCAATG	1 cut(s)	2559
Bse8I	GATNNNNATC	3 cut(s)	2439, 2768, 3024
BseBI	CCWGG	2 cut(s)	327, 380
BseCI	ATCGAT	2 cut(s)	88, 2952
BseDI	CCNNGG	6 cut(s)	69, 519, 551, 1695, 2649, 2726
BseGI	GGATG	5 cut(s)	194, 405, 833, 2219, 2587
BseJI	GATNNNNATC	3 cut(s)	2439, 2768, 3024
BseLI	CCNNNNNNNGG	7 cut(s)	176, 419, 684, 1748, 1984, 2650, 2732
BseMI	GCAATG	1 cut(s)	2559
BseMII	CTCAG	4 cut(s)	329, 794, 967, 2978
BseNI	ACTGG	8 cut(s)	141, 155, 616, 716, 976, 1036, 1357, 3056
BseRI	GAGGAG	4 cut(s)	402, 898, 1764, 2879
BseSI	GKGCMC	2 cut(s)	2683, 2999
BseXI	GCAGC	9 cut(s)	186, 999, 1338, 1359, 1572, 1596, 2128, 2415, 2816
BseYI	CCCAGC	2 cut(s)	572, 1718
BsgI	GTGCAG	2 cut(s)	1431, 1875
BshFI	GGCC	6 cut(s)	260, 383, 2082, 2323, 2469, 2815
BshNI	GGYRCC	2 cut(s)	2096, 2539
BshVI	ATCGAT	2 cut(s)	88, 2952
BsiHKAI	GWGCWC	1 cut(s)	2999
BsiSI	CCGG	1 cut(s)	623
BslFI	GGGAC	2 cut(s)	771, 965
BslI	CCNNNNNNNGG	7 cut(s)	176, 419, 684, 1748, 1984, 2650, 2732
BsmAI	GTCTC	6 cut(s)	1068, 1996, 2400, 2803, 2939, 2962
BsmFI	GGGAC	2 cut(s)	771, 965
BsnI	GGCC	6 cut(s)	260, 383, 2082, 2323, 2469, 2815
Bso31I	GGTCTC	1 cut(s)	2939
Bsp1286I	GDGCHC	4 cut(s)	425, 2683, 2857, 2999
Bsp19I	CCATGG	1 cut(s)	519
BspACI	CCGC	8 cut(s)	177, 234, 257, 460, 1773, 2178, 2557, 2579
BspANI	GGCC	6 cut(s)	260, 383, 2082, 2323, 2469, 2815
BspCNI	CTCAG	4 cut(s)	328, 795, 966, 2977
BspDI	ATCGAT	2 cut(s)	88, 2952
BspHI	TCATGA	2 cut(s)	2374, 2896
BspLI	GGNNCC	7 cut(s)	403, 424, 759, 1051, 1729, 2098, 2541
BspMAI	CTGCAG	2 cut(s)	1614, 2806
BspMI	ACCTGC	3 cut(s)	239, 1628, 1986
BspPI	GGATC	7 cut(s)	16, 161, 1044, 1057, 1696, 2717, 2743
BspQI	GCTCTTC	2 cut(s)	1162, 1267
BspT107I	GGYRCC	2 cut(s)	2096, 2539
BspTNI	GGTCTC	1 cut(s)	2939
BsrBI	CCGCTC	1 cut(s)	2180
BsrDI	GCAATG	1 cut(s)	2559
BsrI	ACTGG	8 cut(s)	141, 155, 616, 716, 976, 1036, 1357, 3056
BssECI	CCNNGG	6 cut(s)	69, 519, 551, 1695, 2649, 2726
BssSI	CACGAG	1 cut(s)	2856
BssT1I	CCWWGG	6 cut(s)	69, 519, 551, 1695, 2649, 2726
Bst2BI	CACGAG	1 cut(s)	2856
Bst2UI	CCWGG	2 cut(s)	327, 380
Bst4CI	ACNGT	5 cut(s)	1264, 1376, 1510, 2270, 2388
Bst6I	CTCTTC	2 cut(s)	1162, 1267
BstC8I	GCNNGC	8 cut(s)	489, 1131, 1135, 1153, 1450, 2817, 2840, 2995
BstDEI	CTNAG	9 cut(s)	315, 593, 722, 803, 953, 1564, 1934, 2810, 2964
BstDSI	CCRYGG	1 cut(s)	519
BstENI	CCTNNNNNAGG	1 cut(s)	1746
BstF5I	GGATG	5 cut(s)	194, 405, 833, 2219, 2587
BstHHI	GCGC	2 cut(s)	1575, 2631
BstMAI	GTCTC	6 cut(s)	1068, 1996, 2400, 2803, 2939, 2962
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 80, 1634, 2329
BstNI	CCWGG	2 cut(s)	327, 380
BstNSI	RCATGY	3 cut(s)	16, 1212, 2842
BstSCI	CCNGG	3 cut(s)	325, 378, 622
BstSFI	CTRYAG	6 cut(s)	1116, 1380, 1610, 1848, 1875, 2802
BstSLI	GKGCMC	2 cut(s)	2683, 2999
BstV1I	GCAGC	9 cut(s)	186, 999, 1338, 1359, 1572, 1596, 2128, 2415, 2816
BstV2I	GAAGAC	5 cut(s)	149, 539, 875, 2760, 2817
BstX2I	RGATCY	4 cut(s)	282, 1049, 1701, 3019
BstXI	CCANNNNNNTGG	1 cut(s)	2776
BstYI	RGATCY	4 cut(s)	282, 1049, 1701, 3019
Bsu15I	ATCGAT	2 cut(s)	88, 2952
BsuI	GTATCC	2 cut(s)	1282, 1748
BsuRI	GGCC	6 cut(s)	260, 383, 2082, 2323, 2469, 2815
BsuTUI	ATCGAT	2 cut(s)	88, 2952
BtgI	CCRYGG	1 cut(s)	519
BtrI	CACGTC	1 cut(s)	2758
BtsCI	GGATG	5 cut(s)	194, 405, 833, 2219, 2587
BtsI	GCAGTG	1 cut(s)	1863
BveI	ACCTGC	3 cut(s)	239, 1628, 1986
Cac8I	GCNNGC	8 cut(s)	489, 1131, 1135, 1153, 1450, 2817, 2840, 2995
CaiI	CAGNNNCTG	1 cut(s)	1115
CciI	TCATGA	2 cut(s)	2374, 2896
CfoI	GCGC	2 cut(s)	1575, 2631
Cfr13I	GGNCC	9 cut(s)	382, 758, 824, 1304, 1547, 1760, 1823, 2066, 2080
ClaI	ATCGAT	2 cut(s)	88, 2952
CseI	GACGC	1 cut(s)	2286
Csp6I	GTAC	8 cut(s)	107, 627, 845, 1225, 1511, 2254, 2496, 2961
CspCI	CAANNNNNGTGG	2 cut(s)	1376, 1411
CviQI	GTAC	8 cut(s)	107, 627, 845, 1225, 1511, 2254, 2496, 2961
DdeI	CTNAG	9 cut(s)	315, 593, 722, 803, 953, 1564, 1934, 2810, 2964
DraI	TTTAAA	1 cut(s)	1965
EaeI	YGGCCR	2 cut(s)	258, 2321
Eam1104I	CTCTTC	2 cut(s)	1162, 1267
EarI	CTCTTC	2 cut(s)	1162, 1267
EciI	GGCGGA	1 cut(s)	1762
Eco130I	CCWWGG	6 cut(s)	69, 519, 551, 1695, 2649, 2726
Eco147I	AGGCCT	1 cut(s)	2815
Eco24I	GRGCYC	2 cut(s)	425, 2857
Eco31I	GGTCTC	1 cut(s)	2939
Eco32I	GATATC	1 cut(s)	2457
Eco47I	GGWCC	7 cut(s)	758, 824, 1304, 1547, 1760, 1823, 2066
Eco57I	CTGAAG	1 cut(s)	2811
EcoNI	CCTNNNNNAGG	1 cut(s)	1746
EcoRI	GAATTC	1 cut(s)	2598
EcoRII	CCWGG	2 cut(s)	325, 378
EcoRV	GATATC	1 cut(s)	2457
EcoT14I	CCWWGG	6 cut(s)	69, 519, 551, 1695, 2649, 2726
EcoT38I	GRGCYC	2 cut(s)	425, 2857
ErhI	CCWWGG	6 cut(s)	69, 519, 551, 1695, 2649, 2726
FalI	AAGNNNNNCTT	2 cut(s)	1291, 1323
FaqI	GGGAC	2 cut(s)	771, 965
FauI	CCCGC	1 cut(s)	2550
FauNDI	CATATG	1 cut(s)	1279
FbaI	TGATCA	1 cut(s)	277
FokI	GGATG	5 cut(s)	201, 392, 820, 2226, 2594
FriOI	GRGCYC	2 cut(s)	425, 2857
FspBI	CTAG	8 cut(s)	434, 731, 744, 1410, 2471, 2511, 2711, 2717
GlaI	GCGC	2 cut(s)	1574, 2630
GsaI	CCCAGC	2 cut(s)	576, 1722
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	6 cut(s)	260, 383, 2082, 2323, 2469, 2815
HapII	CCGG	1 cut(s)	623
HgaI	GACGC	1 cut(s)	2286
HhaI	GCGC	2 cut(s)	1575, 2631
Hin6I	GCGC	2 cut(s)	1573, 2629
HinP1I	GCGC	2 cut(s)	1573, 2629
HincII	GTYRAC	2 cut(s)	439, 1975
HindII	GTYRAC	2 cut(s)	439, 1975
HindIII	AAGCTT	3 cut(s)	111, 638, 2477
HinfI	GANTC	8 cut(s)	736, 830, 1066, 1413, 2381, 2879, 2927, 3041
HpaI	GTTAAC	1 cut(s)	439
HpaII	CCGG	1 cut(s)	623
HphI	GGTGA	3 cut(s)	220, 1096, 2495
Hpy166II	GTNNAC	8 cut(s)	439, 1304, 1513, 1539, 1588, 1975, 2074, 2997
Hpy8I	GTNNAC	8 cut(s)	439, 1304, 1513, 1539, 1588, 1975, 2074, 2997
HpyCH4III	ACNGT	5 cut(s)	1264, 1376, 1510, 2270, 2388
HpyCH4IV	ACGT	2 cut(s)	225, 2757
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 80, 1634, 2329
HpyF3I	CTNAG	9 cut(s)	315, 593, 722, 803, 953, 1564, 1934, 2810, 2964
HpySE526I	ACGT	2 cut(s)	225, 2757
HspAI	GCGC	2 cut(s)	1573, 2629
Ksp22I	TGATCA	1 cut(s)	277
KspAI	GTTAAC	1 cut(s)	439
LguI	GCTCTTC	2 cut(s)	1162, 1267
LmnI	GCTCC	5 cut(s)	80, 428, 1006, 1954, 2222
Lsp1109I	GCAGC	9 cut(s)	186, 999, 1338, 1359, 1572, 1596, 2128, 2415, 2816
LweI	GCATC	4 cut(s)	244, 1285, 2005, 2204
MaeI	CTAG	8 cut(s)	434, 731, 744, 1410, 2471, 2511, 2711, 2717
MaeII	ACGT	2 cut(s)	225, 2757
MaeIII	GTNAC	5 cut(s)	226, 386, 1258, 1355, 1681
MbiI	CCGCTC	1 cut(s)	2180
MfeI	CAATTG	1 cut(s)	238
MflI	RGATCY	4 cut(s)	282, 1049, 1701, 3019
MhlI	GDGCHC	4 cut(s)	425, 2683, 2857, 2999
MlsI	TGGCCA	1 cut(s)	2323
MluNI	TGGCCA	1 cut(s)	2323
MlyI	GAGTC	1 cut(s)	1407
MmeI	TCCRAC	5 cut(s)	391, 433, 1574, 1843, 2254
Mox20I	TGGCCA	1 cut(s)	2323
MscI	TGGCCA	1 cut(s)	2323
MseI	TTAA	9 cut(s)	438, 650, 794, 897, 1028, 1964, 2112, 2745, 3067
MslI	CAYNNNNRTG	1 cut(s)	2774
Msp20I	TGGCCA	1 cut(s)	2323
MspA1I	CMGCKG	2 cut(s)	177, 1178
MspI	CCGG	1 cut(s)	623
MspR9I	CCNGG	3 cut(s)	327, 380, 624
MunI	CAATTG	1 cut(s)	238
MvaI	CCWGG	2 cut(s)	327, 380
MwoI	GCNNNNNNNGC	4 cut(s)	71, 80, 1634, 2329
NciI	CCSGG	1 cut(s)	624
NcoI	CCATGG	1 cut(s)	519
NdeI	CATATG	1 cut(s)	1279
NlaIV	GGNNCC	7 cut(s)	403, 424, 759, 1051, 1729, 2098, 2541
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	3 cut(s)	16, 1212, 2842
PaeI	GCATGC	1 cut(s)	2842
PagI	TCATGA	2 cut(s)	2374, 2896
PaqCI	CACCTGC	2 cut(s)	239, 1628
PceI	AGGCCT	1 cut(s)	2815
PciI	ACATGT	1 cut(s)	1208
PciSI	GCTCTTC	2 cut(s)	1162, 1267
PfeI	GAWTC	7 cut(s)	736, 830, 1066, 2381, 2879, 2927, 3041
PflFI	GACNNNGTC	1 cut(s)	2717
PleI	GAGTC	1 cut(s)	1407
PpsI	GAGTC	1 cut(s)	1407
PscI	ACATGT	1 cut(s)	1208
PshBI	ATTAAT	1 cut(s)	897
Psp6I	CCWGG	2 cut(s)	325, 378
PspFI	CCCAGC	2 cut(s)	572, 1718
PspGI	CCWGG	2 cut(s)	325, 378
PspN4I	GGNNCC	7 cut(s)	403, 424, 759, 1051, 1729, 2098, 2541
PspPI	GGNCC	9 cut(s)	382, 758, 824, 1304, 1547, 1760, 1823, 2066, 2080
PstI	CTGCAG	2 cut(s)	1614, 2806
PstNI	CAGNNNCTG	1 cut(s)	1115
PsuI	RGATCY	4 cut(s)	282, 1049, 1701, 3019
PsyI	GACNNNGTC	1 cut(s)	2717
PvuII	CAGCTG	1 cut(s)	1178
RsaI	GTAC	8 cut(s)	108, 628, 846, 1226, 1512, 2255, 2497, 2962
RsaNI	GTAC	8 cut(s)	107, 627, 845, 1225, 1511, 2254, 2496, 2961
RseI	CAYNNNNRTG	1 cut(s)	2774
SapI	GCTCTTC	2 cut(s)	1162, 1267
SaqAI	TTAA	9 cut(s)	438, 650, 794, 897, 1028, 1964, 2112, 2745, 3067
Sau96I	GGNCC	9 cut(s)	382, 758, 824, 1304, 1547, 1760, 1823, 2066, 2080
ScaI	AGTACT	1 cut(s)	2962
SchI	GAGTC	1 cut(s)	1407
ScrFI	CCNGG	3 cut(s)	327, 380, 624
SduI	GDGCHC	4 cut(s)	425, 2683, 2857, 2999
SfaNI	GCATC	4 cut(s)	244, 1285, 2005, 2204
SfcI	CTRYAG	6 cut(s)	1116, 1380, 1610, 1848, 1875, 2802
SinI	GGWCC	7 cut(s)	758, 824, 1304, 1547, 1760, 1823, 2066
SmiMI	CAYNNNNRTG	1 cut(s)	2774
SmlI	CTYRAG	3 cut(s)	198, 848, 1999
SmoI	CTYRAG	3 cut(s)	198, 848, 1999
SpeI	ACTAGT	1 cut(s)	433
SphI	GCATGC	1 cut(s)	2842
SseBI	AGGCCT	1 cut(s)	2815
SsiI	CCGC	8 cut(s)	177, 234, 257, 460, 1773, 2178, 2557, 2579
SspI	AATATT	5 cut(s)	212, 496, 895, 917, 1624
SspMI	CTAG	8 cut(s)	434, 731, 744, 1410, 2471, 2511, 2711, 2717
StuI	AGGCCT	1 cut(s)	2815
StyD4I	CCNGG	3 cut(s)	325, 378, 622
StyI	CCWWGG	6 cut(s)	69, 519, 551, 1695, 2649, 2726
TaaI	ACNGT	5 cut(s)	1264, 1376, 1510, 2270, 2388
TaiI	ACGT	2 cut(s)	228, 2760
TaqI	TCGA	6 cut(s)	88, 245, 599, 2721, 2952, 2985
TatI	WGTACW	5 cut(s)	106, 844, 1510, 2253, 2960
TauI	GCSGC	2 cut(s)	237, 260
TfiI	GAWTC	7 cut(s)	736, 830, 1066, 2381, 2879, 2927, 3041
Tru1I	TTAA	9 cut(s)	438, 650, 794, 897, 1028, 1964, 2112, 2745, 3067
Tru9I	TTAA	9 cut(s)	438, 650, 794, 897, 1028, 1964, 2112, 2745, 3067
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	9 cut(s)	174, 987, 1326, 1347, 1560, 1609, 2116, 2428, 2804
Tsp45I	GTSAC	1 cut(s)	226
TspGWI	ACGGA	2 cut(s)	327, 1694
Tth111I	GACNNNGTC	1 cut(s)	2717
VneI	GTGCAC	1 cut(s)	2995
VpaK11BI	GGWCC	7 cut(s)	758, 824, 1304, 1547, 1760, 1823, 2066
VspI	ATTAAT	1 cut(s)	897
XagI	CCTNNNNNAGG	1 cut(s)	1746
XapI	RAATTY	8 cut(s)	154, 319, 565, 774, 790, 853, 1036, 2598
XbaI	TCTAGA	1 cut(s)	1409
XceI	RCATGY	3 cut(s)	16, 1212, 2842
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1833, 2090, 2827
XspI	CTAG	8 cut(s)	434, 731, 744, 1410, 2471, 2511, 2711, 2717
ZrmI	AGTACT	1 cut(s)	2962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.