Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000292

Physical Location & Seq

Genomic Coordinates Forward (+)

38388645 .. 38390003

Gene Structure 1359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1268100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGATTTCTGCTCTGCAACACCCTCATCTTGTCAAGCTCCACATATGTTGTATTGAAAGAAATCAATTATTGCTTGTCTATAAGTACCTGGAAAATTATAGCATCGCTCATGCTTATCTTCAGCACAAGATTTGTATTGTTACAGCAAGAGGTTTGGCTTATCTTCATGAGGAATCAAGATTGAAGGTCGTTCATAGAGACATCAAGGCTACTAATGTTCTGCTTGATAAAAATCTTAACCAGAAAATATCTAACTTTGGATTGGCCAAGCTTGATAAAGAGGATAATACACACATTAGCACCCGTATTGCTAGAACTTATGGATACATGGCGCCCGAATATGCAATACGGGGTTATCTGACTGATAAAGCATATGTCTATAGTTTTGGTACTCTCGTATTGGAAATTGTTAGCGGGAGAAACAACACAACTTACTGGAAAAAGGAAGAAAGCTTTTATCTTCTTGATTGGGCACGACTTCTAAAAGAGCAAGGGAATTTGATGGACCTAGTTGATCCAAGGTTGGAATCAGACTTTAACAAAGACGAGATGACTGTTGCAATCAATGTGGCTCTCCTTTGTTGCAATGTTACTTCGACAGCTAGGCCTACCATGTCTTTGATTGTGAGCATGCTCGAAGGAAAGGCTGTTGTTCAGGAGTTGGTCTCGGATCCAAATGCTGAGAGTATTGAGATCGATGCAATGAGGAAACATTTTCAATCTAGTTTTGGAAGGGGCATGGGCGAGAAACAGATAGAAACAGAGTCAATTGAAGGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

261

Amino Acids

29.66

Weight (kDa)

6.51

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 209	4.3e-25	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 209	6.5e-24	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53420 AT3G14840
fragaria_vesca	FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica	MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica	Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis	pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis	RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata	RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora	Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa	Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha	Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana	Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	331
AciI	CCGC	1 cut(s)	414
AclWI	GGATC	3 cut(s)	509, 665, 678
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	496
AcuI	CTGAAG	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	2 cut(s)	86, 391
AgsI	TTSAA	4 cut(s)	56, 184, 719, 773
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	4 cut(s)	37, 271, 453, 602
AluI	AGCT	4 cut(s)	37, 271, 453, 602
Alw26I	GTCTC	2 cut(s)	192, 670
AlwI	GGATC	3 cut(s)	509, 665, 678
AoxI	GGCC	3 cut(s)	264, 605, 776
ApoI	RAATTY	1 cut(s)	496
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	2 cut(s)	505, 776
AvaII	GGWCC	1 cut(s)	505
BaeGI	GKGCMC	1 cut(s)	475
BaeI	ACNNNNGTAYC	2 cut(s)	381, 414
BalI	TGGCCA	1 cut(s)	266
BamHI	GGATCC	1 cut(s)	670
BanI	GGYRCC	1 cut(s)	331
BccI	CCATC	1 cut(s)	496
BciT130I	CCWGG	1 cut(s)	89
BciVI	GTATCC	1 cut(s)	317
BcoDI	GTCTC	2 cut(s)	192, 670
BfaI	CTAG	4 cut(s)	312, 509, 603, 723
BfmI	CTRYAG	1 cut(s)	379
BfoI	RGCGCY	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	317
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	2 cut(s)	505, 776
BmiI	GGNNCC	2 cut(s)	333, 672
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	111, 688
BplI	GAGNNNNNCTC	2 cut(s)	650, 682
Bsa29I	ATCGAT	1 cut(s)	696
BsaBI	GATNNNNATC	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	670
BsaJI	CCNNGG	1 cut(s)	518
Bse1I	ACTGG	1 cut(s)	440
Bse3DI	GCAATG	2 cut(s)	592, 708
Bse8I	GATNNNNATC	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	89
BseCI	ATCGAT	1 cut(s)	696
BseDI	CCNNGG	1 cut(s)	518
BseJI	GATNNNNATC	1 cut(s)	231
BseMI	GCAATG	2 cut(s)	592, 708
BseMII	CTCAG	1 cut(s)	672
BseNI	ACTGG	1 cut(s)	440
BseSI	GKGCMC	1 cut(s)	475
BshFI	GGCC	3 cut(s)	266, 607, 778
BshNI	GGYRCC	1 cut(s)	331
BshVI	ATCGAT	1 cut(s)	696
BsmAI	GTCTC	2 cut(s)	192, 670
BsnI	GGCC	3 cut(s)	266, 607, 778
Bso31I	GGTCTC	1 cut(s)	670
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	3 cut(s)	514, 670, 693
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	3 cut(s)	266, 607, 778
BspCNI	CTCAG	1 cut(s)	673
BspDI	ATCGAT	1 cut(s)	696
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	333, 672
BspPI	GGATC	3 cut(s)	509, 665, 678
BspT107I	GGYRCC	1 cut(s)	331
BspTNI	GGTCTC	1 cut(s)	670
BsrDI	GCAATG	2 cut(s)	592, 708
BsrI	ACTGG	1 cut(s)	440
BssECI	CCNNGG	1 cut(s)	518
BssMI	GATC	3 cut(s)	514, 670, 693
BssNI	GRCGYC	1 cut(s)	332
BssT1I	CCWWGG	1 cut(s)	518
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	556
BstACI	GRCGYC	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	632
BstDEI	CTNAG	1 cut(s)	681
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	3 cut(s)	517, 673, 696
BstMAI	GTCTC	2 cut(s)	192, 670
BstMBI	GATC	3 cut(s)	514, 670, 693
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	379
BstSLI	GKGCMC	1 cut(s)	475
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
Bsu15I	ATCGAT	1 cut(s)	696
BsuI	GTATCC	1 cut(s)	317
BsuRI	GGCC	3 cut(s)	266, 607, 778
BsuTUI	ATCGAT	1 cut(s)	696
BtgZI	GCGATG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	632
CciI	TCATGA	1 cut(s)	166
CfoI	GCGC	1 cut(s)	334
Cfr13I	GGNCC	2 cut(s)	505, 776
ClaI	ATCGAT	1 cut(s)	696
Csp6I	GTAC	2 cut(s)	85, 390
CspCI	CAANNNNNGTGG	4 cut(s)	29, 64, 549, 584
CviAII	CATG	7 cut(s)	110, 167, 328, 613, 631, 739, 780
CviQI	GTAC	2 cut(s)	85, 390
DdeI	CTNAG	1 cut(s)	681
DinI	GGCGCC	1 cut(s)	333
DpnI	GATC	3 cut(s)	516, 672, 695
DpnII	GATC	3 cut(s)	514, 670, 693
EaeI	YGGCCR	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	518
Eco147I	AGGCCT	1 cut(s)	607
Eco31I	GGTCTC	1 cut(s)	670
Eco47I	GGWCC	1 cut(s)	505
Eco57I	CTGAAG	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	518
EgeI	GGCGCC	1 cut(s)	333
EheI	GGCGCC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	518
FaeI	CATG	7 cut(s)	113, 170, 331, 616, 634, 742, 783
FatI	CATG	7 cut(s)	109, 166, 327, 612, 630, 738, 779
FauI	CCCGC	1 cut(s)	407
FauNDI	CATATG	2 cut(s)	44, 373
FspBI	CTAG	4 cut(s)	312, 509, 603, 723
GlaI	GCGC	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	3 cut(s)	266, 607, 778
HhaI	GCGC	1 cut(s)	334
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	7 cut(s)	113, 170, 331, 616, 634, 742, 783
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HindIII	AAGCTT	2 cut(s)	269, 451
HinfI	GANTC	3 cut(s)	173, 527, 764
Hpy188I	TCNGA	3 cut(s)	360, 532, 670
Hpy188III	TCNNGA	4 cut(s)	167, 177, 464, 656
HpyAV	CCTTC	4 cut(s)	178, 632, 726, 767
HpyCH4III	ACNGT	1 cut(s)	556
HpyCH4V	TGCA	5 cut(s)	16, 344, 560, 585, 701
HpyF3I	CTNAG	1 cut(s)	681
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	7 cut(s)	113, 170, 331, 616, 634, 742, 783
HspAI	GCGC	1 cut(s)	332
KasI	GGCGCC	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	514, 670, 693
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	5 cut(s)	74, 101, 254, 421, 641
LweI	GCATC	2 cut(s)	111, 688
MaeI	CTAG	4 cut(s)	312, 509, 603, 723
MaeIII	GTNAC	2 cut(s)	139, 589
MalI	GATC	3 cut(s)	516, 672, 695
MboI	GATC	3 cut(s)	514, 670, 693
MboII	GAAGA	4 cut(s)	110, 155, 452, 458
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	1 cut(s)	670
MhlI	GDGCHC	1 cut(s)	475
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	5 cut(s)	65, 94, 405, 496, 768
MluNI	TGGCCA	1 cut(s)	266
Mly113I	GGCGCC	1 cut(s)	332
MlyI	GAGTC	1 cut(s)	773
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	5 cut(s)	33, 143, 163, 274, 699
Mox20I	TGGCCA	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	2 cut(s)	237, 537
Msp20I	TGGCCA	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	89
MunI	CAATTG	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	89
NarI	GGCGCC	1 cut(s)	332
NdeI	CATATG	2 cut(s)	44, 373
NdeII	GATC	3 cut(s)	514, 670, 693
NlaIII	CATG	7 cut(s)	113, 170, 331, 616, 634, 742, 783
NlaIV	GGNNCC	2 cut(s)	333, 672
NspI	RCATGY	1 cut(s)	634
PaeI	GCATGC	1 cut(s)	634
PagI	TCATGA	1 cut(s)	166
PceI	AGGCCT	1 cut(s)	607
PfeI	GAWTC	2 cut(s)	173, 527
PleI	GAGTC	1 cut(s)	772
PluTI	GGCGCC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	772
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	2 cut(s)	333, 672
PspPI	GGNCC	2 cut(s)	505, 776
PsuI	RGATCY	1 cut(s)	670
RsaI	GTAC	2 cut(s)	86, 391
RsaNI	GTAC	2 cut(s)	85, 390
SaqAI	TTAA	2 cut(s)	237, 537
Sau3AI	GATC	3 cut(s)	514, 670, 693
Sau96I	GGNCC	2 cut(s)	505, 776
SchI	GAGTC	1 cut(s)	773
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	475
SetI	ASST	9 cut(s)	39, 90, 154, 189, 273, 455, 510, 524, 604
SfaNI	GCATC	2 cut(s)	111, 688
SfcI	CTRYAG	1 cut(s)	379
SfoI	GGCGCC	1 cut(s)	333
SinI	GGWCC	1 cut(s)	505
SphI	GCATGC	1 cut(s)	634
Sse9I	AATT	5 cut(s)	65, 94, 405, 496, 768
SseBI	AGGCCT	1 cut(s)	607
SsiI	CCGC	1 cut(s)	414
SspDI	GGCGCC	1 cut(s)	331
SspMI	CTAG	4 cut(s)	312, 509, 603, 723
StuI	AGGCCT	1 cut(s)	607
StyD4I	CCNGG	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	518
TaaI	ACNGT	1 cut(s)	556
TaqI	TCGA	3 cut(s)	596, 636, 696
TasI	AATT	5 cut(s)	65, 94, 405, 496, 768
TfiI	GAWTC	2 cut(s)	173, 527
Tru1I	TTAA	2 cut(s)	237, 537
Tru9I	TTAA	2 cut(s)	237, 537
TspDTI	ATGAA	2 cut(s)	155, 182
VpaK11BI	GGWCC	1 cut(s)	505
XapI	RAATTY	1 cut(s)	496
XceI	RCATGY	1 cut(s)	634
XspI	CTAG	4 cut(s)	312, 509, 603, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.