Rmu_sc0001608.1_g000040

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001608.1
OG0000292
Physical Location & Seq
Reverse (-)
193821 .. 194620
800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001608.1_g000040.1.cds

Sequence Viewer

Length: 507 bp
atgatggttgatatcacaatttgcagtggttttatggcacctgaatatgcaatgcggggttatctgactgataaagcagatgtttatagtttcggaattcttgtattggaaatggcacttcttctaaaagagagagcaagtttgttggacctggtggatccaaggttggactcagagtttaacaaagcagagatgattaatacgatcaatattgctctcctttgtgctaatgcttcttcagcagttaggcccgctatgtcttcagtggtgagcatgcttgaaggtagagcttctgttcaggaggtggtctttgatccaaacgcctcaattaatgaaatcaatgcgatgaggagacattttcaatccaatattgaagaaaacaatggtgaccctgagagtcagagacgaactatgtcaattgaagggtcgtggaccgcttcaactacatctgctcaagacctctatccagtccgccctgattcatattattgggaaaatagaaattag

Protein Analysis

168

Amino Acids

18.82

Weight (kDa)

4.57

Isoelectric Point (pI)

55.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AciI CCGC 4 cut(s) 55, 252, 435, 472
AclWI GGATC 3 cut(s) 152, 165, 308
AcsI RAATTY 1 cut(s) 96
AcuI CTGAAG 2 cut(s) 222, 246
AgsI TTSAA 5 cut(s) 281, 362, 374, 422, 441
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
Alw26I GTCTC 2 cut(s) 346, 397
AlwI GGATC 3 cut(s) 152, 165, 308
AoxI GGCC 1 cut(s) 248
ApoI RAATTY 1 cut(s) 96
AseI ATTAAT 2 cut(s) 198, 330
AspS9I GGNCC 3 cut(s) 148, 249, 432
AsuHPI GGTGA 2 cut(s) 280, 398
AvaII GGWCC 2 cut(s) 148, 432
BamHI GGATCC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 252
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 346, 397
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 2 cut(s) 148, 432
BmgT120I GGNCC 3 cut(s) 148, 249, 432
BmiI GGNNCC 2 cut(s) 39, 159
BmrFI CCNGG 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 467
Bse3DI GCAATG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 2 cut(s) 186, 384
BseNI ACTGG 1 cut(s) 467
BseRI GAGGAG 1 cut(s) 364
BshFI GGCC 1 cut(s) 250
BshNI GGYRCC 1 cut(s) 37
BsmAI GTCTC 2 cut(s) 346, 397
BsmBI CGTCTC 1 cut(s) 397
BsnI GGCC 1 cut(s) 250
Bsp143I GATC 3 cut(s) 157, 204, 313
BspACI CCGC 4 cut(s) 55, 252, 435, 472
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 2 cut(s) 185, 385
BspLI GGNNCC 2 cut(s) 39, 159
BspPI GGATC 3 cut(s) 152, 165, 308
BspT107I GGYRCC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 57
BsrI ACTGG 1 cut(s) 467
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 3 cut(s) 157, 204, 313
BssT1I CCWWGG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 252, 275
BstDEI CTNAG 2 cut(s) 172, 393
BstEII GGTNACC 1 cut(s) 386
BstKTI GATC 3 cut(s) 160, 207, 316
BstMAI GTCTC 2 cut(s) 346, 397
BstMBI GATC 3 cut(s) 157, 204, 313
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 277
BstPI GGTNACC 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 1 cut(s) 250
BtgZI GCGATG 1 cut(s) 359
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 2 cut(s) 31, 270
Cac8I GCNNGC 2 cut(s) 252, 275
Cfr13I GGNCC 3 cut(s) 148, 249, 432
CsiI ACCWGGT 1 cut(s) 150
CviAII CATG 1 cut(s) 274
CviJI RGCY 2 cut(s) 250, 290
CviKI_1 RGCY 2 cut(s) 250, 290
DdeI CTNAG 2 cut(s) 172, 393
DpnI GATC 3 cut(s) 159, 206, 315
DpnII GATC 3 cut(s) 157, 204, 313
EciI GGCGGA 1 cut(s) 461
Eco130I CCWWGG 1 cut(s) 161
Eco32I GATATC 1 cut(s) 13
Eco47I GGWCC 2 cut(s) 148, 432
Eco57I CTGAAG 2 cut(s) 222, 246
Eco91I GGTNACC 1 cut(s) 386
EcoO65I GGTNACC 1 cut(s) 386
EcoRI GAATTC 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 150
EcoRV GATATC 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
Esp3I CGTCTC 1 cut(s) 397
FaeI CATG 1 cut(s) 277
FaiI YATR 7 cut(s) 35, 48, 87, 257, 275, 413, 484
FatI CATG 1 cut(s) 273
FauI CCCGC 2 cut(s) 48, 259
HaeIII GGCC 1 cut(s) 250
Hin1II CATG 1 cut(s) 277
HinfI GANTC 3 cut(s) 170, 397, 479
HphI GGTGA 2 cut(s) 280, 398
Hpy166II GTNNAC 1 cut(s) 432
Hpy188I TCNGA 4 cut(s) 66, 95, 175, 402
Hpy188III TCNNGA 2 cut(s) 299, 455
Hpy8I GTNNAC 1 cut(s) 432
HpyAV CCTTC 2 cut(s) 275, 416
HpyCH4V TGCA 2 cut(s) 24, 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 2 cut(s) 172, 393
Hsp92II CATG 1 cut(s) 277
Kzo9I GATC 3 cut(s) 157, 204, 313
LpnPI CCDG 7 cut(s) 54, 137, 164, 284, 405, 480, 489
MabI ACCWGGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 386
MalI GATC 3 cut(s) 159, 206, 315
MboI GATC 3 cut(s) 157, 204, 313
MboII GAAGA 4 cut(s) 113, 228, 252, 386
MfeI CAATTG 1 cut(s) 417
MflI RGATCY 1 cut(s) 157
MluCI AATT 5 cut(s) 18, 96, 327, 417, 502
MlyI GAGTC 2 cut(s) 164, 406
MmeI TCCRAC 2 cut(s) 126, 147
MnlI CCTC 4 cut(s) 295, 334, 342, 470
MseI TTAA 3 cut(s) 180, 198, 330
MspR9I CCNGG 1 cut(s) 152
MunI CAATTG 1 cut(s) 417
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 3 cut(s) 157, 204, 313
NlaIII CATG 1 cut(s) 277
NlaIV GGNNCC 2 cut(s) 39, 159
NmuCI GTSAC 1 cut(s) 386
NspI RCATGY 1 cut(s) 277
PaeI GCATGC 1 cut(s) 277
PfeI GAWTC 1 cut(s) 479
PleI GAGTC 2 cut(s) 164, 405
PpsI GAGTC 2 cut(s) 164, 405
PshBI ATTAAT 2 cut(s) 198, 330
Psp6I CCWGG 1 cut(s) 150
PspEI GGTNACC 1 cut(s) 386
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 39, 159
PspPI GGNCC 3 cut(s) 148, 249, 432
PsuI RGATCY 1 cut(s) 157
SaqAI TTAA 3 cut(s) 180, 198, 330
Sau3AI GATC 3 cut(s) 157, 204, 313
Sau96I GGNCC 3 cut(s) 148, 249, 432
SchI GAGTC 2 cut(s) 164, 406
ScrFI CCNGG 1 cut(s) 152
SetI ASST 7 cut(s) 43, 153, 167, 286, 292, 306, 462
SexAI ACCWGGT 1 cut(s) 150
SinI GGWCC 2 cut(s) 148, 432
SmlI CTYRAG 1 cut(s) 453
SmoI CTYRAG 1 cut(s) 453
SphI GCATGC 1 cut(s) 277
Sse9I AATT 5 cut(s) 18, 96, 327, 417, 502
SsiI CCGC 4 cut(s) 55, 252, 435, 472
SspI AATATT 2 cut(s) 211, 370
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 161
TasI AATT 5 cut(s) 18, 96, 327, 417, 502
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 3 cut(s) 180, 198, 330
Tru9I TTAA 3 cut(s) 180, 198, 330
TscAI CASTG 2 cut(s) 31, 270
TseFI GTSAC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 348, 471
TspRI CASTG 2 cut(s) 31, 270
VpaK11BI GGWCC 2 cut(s) 148, 432
VspI ATTAAT 2 cut(s) 198, 330
XapI RAATTY 1 cut(s) 96
XceI RCATGY 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.