Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000292

Physical Location & Seq

Genomic Coordinates Forward (+)

38448927 .. 38450720

Gene Structure 1794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1268500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGATTGCTGACATTTTTTGTACCCTGAATTACTATATCCGGAGAATTATTTCATGTTTCAAAACTTCAGAGTGTCCAAAATATTTGTACTACTCTCTCCATATAAATTGTGGTGGGAAACAATTTACGGTCCCTGGAGGAAAAGATACAGTATATGGTGATGACACATTTTCTGCTGGACCTTCATCATTTTACAAGAGCACAACAAATTGGGCATTAAGCAGCACCGGTTACTTCCCTGATGATGACCGCCCTTATGACACCTTTACATGGACTAATGAAACTAGACTCTCTATGGCCAATCCTCAACTGTACATGAACGCACGCCTTTCTCCCATATCTCTAACTTATTTTGGGTTTTGTCTGGGAAATGGAAACTACACCGTAAACCTCCATTTTGCAGAGATAATGTTTAGAAATGGCAAAACATATAAAAGCTTGGGAAGGCGCATATTTGATATTTACATTCAGGGAAAACTAGTGAAGAAGGACTTCAATATCATGGATGAGGCTGGTGTGTTTGGTGATGTAGTCATACAGAACTTTACTGCTCCTGTAACTAATAATACATTGGAGATTCGTTTCTTTTGGGCTGGGAAAGGGACGACGGCCATCCCTTATAGAGGAGTCTATGGTCCACTTATTTCAGCTATTTCAGTAGACCCAAACTTTGATCCCCCGCAACCTGGTGGAAGTGGCATGCCTGTACGTGCCGTGGTTGGAATTGTGGTTGGAGGAGTCTTCATTATACTACTGATATTTGGTATTCTTTGGAAGAGAGGCCTCCTAGGACAACAAAAGACATTGGAGGATGGTATTAATTTGCAGTTTCTTCTGTTATACTGGTTTTTCCTTTTTGTTTCTCCATTACTTTTTCTCTTTGAGCTTTTTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

299

Amino Acids

33.62

Weight (kDa)

8.48

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	32 - 218	5.8e-42	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53420 AT3G14840
fragaria_vesca	FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica	MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica	Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis	pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis	RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata	RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora	Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa	Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha	Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana	Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	660
AccIII	TCCGGA	1 cut(s)	39
AciI	CCGC	2 cut(s)	250, 680
AclWI	GGATC	1 cut(s)	668
AcoI	YGGCCR	2 cut(s)	297, 609
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	4 cut(s)	22, 89, 314, 708
AfiI	CCNNNNNNNGG	3 cut(s)	270, 623, 686
AgeI	ACCGGT	1 cut(s)	227
AgsI	TTSAA	2 cut(s)	61, 496
AhlI	ACTAGT	1 cut(s)	478
AjnI	CCWGG	2 cut(s)	133, 685
AluBI	AGCT	3 cut(s)	438, 650, 886
AluI	AGCT	3 cut(s)	438, 650, 886
Alw21I	GWGCWC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	668
Aor13HI	TCCGGA	1 cut(s)	39
AoxI	GGCC	3 cut(s)	297, 609, 781
ApeKI	GCWGC	1 cut(s)	222
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
AseI	ATTAAT	1 cut(s)	819
AsiGI	ACCGGT	1 cut(s)	227
Asp700I	GAANNNNTTC	2 cut(s)	49, 491
AspA2I	CCTAGG	1 cut(s)	787
AspLEI	GCGC	1 cut(s)	450
AspS9I	GGNCC	3 cut(s)	130, 179, 635
AsuHPI	GGTGA	2 cut(s)	170, 536
AvaII	GGWCC	3 cut(s)	130, 179, 635
AvrII	CCTAGG	1 cut(s)	787
BalI	TGGCCA	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	733
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	2 cut(s)	620, 806
BceAI	ACGGC	2 cut(s)	624, 698
BciT130I	CCWGG	2 cut(s)	135, 687
BcuI	ACTAGT	1 cut(s)	478
BfaI	CTAG	3 cut(s)	285, 479, 788
BisI	GCNGC	1 cut(s)	223
BlnI	CCTAGG	1 cut(s)	787
BlsI	GCNGC	1 cut(s)	224
Bme1390I	CCNGG	2 cut(s)	135, 687
Bme18I	GGWCC	3 cut(s)	130, 179, 635
BmgT120I	GGNCC	3 cut(s)	130, 179, 635
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	2 cut(s)	135, 687
BpiI	GAAGAC	1 cut(s)	733
BpmI	CTGGAG	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	710
BsaJI	CCNNGG	3 cut(s)	133, 714, 787
BsaWI	WCCGGW	2 cut(s)	39, 227
Bsc4I	CCNNNNNNNGG	3 cut(s)	270, 623, 686
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	848
BseAI	TCCGGA	1 cut(s)	39
BseBI	CCWGG	2 cut(s)	135, 687
BseDI	CCNNGG	3 cut(s)	133, 714, 787
BseGI	GGATG	3 cut(s)	511, 612, 817
BseLI	CCNNNNNNNGG	3 cut(s)	270, 623, 686
BseNI	ACTGG	1 cut(s)	848
BseRI	GAGGAG	2 cut(s)	639, 750
BseXI	GCAGC	1 cut(s)	234
BseYI	CCCAGC	1 cut(s)	593
BshFI	GGCC	3 cut(s)	299, 611, 783
BshTI	ACCGGT	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	40, 228
BslFI	GGGAC	2 cut(s)	116, 616
BslI	CCNNNNNNNGG	3 cut(s)	270, 623, 686
BsmFI	GGGAC	2 cut(s)	116, 616
BsnI	GGCC	3 cut(s)	299, 611, 783
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp13I	TCCGGA	1 cut(s)	39
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	673
BspACI	CCGC	2 cut(s)	250, 680
BspANI	GGCC	3 cut(s)	299, 611, 783
BspEI	TCCGGA	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	668
BsrFI	RCCGGY	1 cut(s)	227
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	848
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	3 cut(s)	133, 714, 787
BssMI	GATC	1 cut(s)	673
BssT1I	CCWWGG	1 cut(s)	787
Bst2UI	CCWGG	2 cut(s)	135, 687
Bst4CI	ACNGT	4 cut(s)	130, 151, 312, 385
Bst6I	CTCTTC	1 cut(s)	770
BstAUI	TGTACA	1 cut(s)	312
BstBAI	YACGTR	1 cut(s)	710
BstC8I	GCNNGC	2 cut(s)	325, 701
BstDSI	CCRYGG	1 cut(s)	714
BstENI	CCTNNNNNAGG	1 cut(s)	621
BstF5I	GGATG	3 cut(s)	511, 612, 817
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	1 cut(s)	676
BstMBI	GATC	1 cut(s)	673
BstNI	CCWGG	2 cut(s)	135, 687
BstNSI	RCATGY	1 cut(s)	703
BstSCI	CCNGG	2 cut(s)	133, 685
BstV1I	GCAGC	1 cut(s)	234
BstV2I	GAAGAC	1 cut(s)	733
BsuRI	GGCC	3 cut(s)	299, 611, 783
BtgI	CCRYGG	1 cut(s)	714
BtsCI	GGATG	3 cut(s)	511, 612, 817
Cac8I	GCNNGC	2 cut(s)	325, 701
CfoI	GCGC	1 cut(s)	450
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	3 cut(s)	130, 179, 635
CsiI	ACCWGGT	1 cut(s)	685
Csp6I	GTAC	4 cut(s)	21, 88, 313, 707
CspAI	ACCGGT	1 cut(s)	227
CviAII	CATG	5 cut(s)	54, 270, 316, 502, 700
CviJI	RGCY	8 cut(s)	299, 438, 512, 593, 611, 650, 783, 886
CviKI_1	RGCY	8 cut(s)	299, 438, 512, 593, 611, 650, 783, 886
CviQI	GTAC	4 cut(s)	21, 88, 313, 707
DpnI	GATC	1 cut(s)	675
DpnII	GATC	1 cut(s)	673
EaeI	YGGCCR	2 cut(s)	297, 609
Eam1104I	CTCTTC	1 cut(s)	770
EarI	CTCTTC	1 cut(s)	770
Eco130I	CCWWGG	1 cut(s)	787
Eco147I	AGGCCT	1 cut(s)	783
Eco47I	GGWCC	3 cut(s)	130, 179, 635
Eco57I	CTGAAG	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	621
EcoRII	CCWGG	2 cut(s)	133, 685
EcoT14I	CCWWGG	1 cut(s)	787
ErhI	CCWWGG	1 cut(s)	787
FaeI	CATG	5 cut(s)	57, 273, 319, 505, 703
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FaqI	GGGAC	2 cut(s)	116, 616
FatI	CATG	5 cut(s)	53, 269, 315, 501, 699
FauI	CCCGC	1 cut(s)	687
FblI	GTMKAC	1 cut(s)	660
Fnu4HI	GCNGC	1 cut(s)	223
FokI	GGATG	3 cut(s)	518, 599, 824
Fsp4HI	GCNGC	1 cut(s)	223
FspBI	CTAG	3 cut(s)	285, 479, 788
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	1 cut(s)	223
GsaI	CCCAGC	1 cut(s)	597
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	3 cut(s)	299, 611, 783
HapII	CCGG	2 cut(s)	40, 228
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	5 cut(s)	57, 273, 319, 505, 703
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	436
HinfI	GANTC	4 cut(s)	288, 577, 627, 738
HpaII	CCGG	2 cut(s)	40, 228
HphI	GGTGA	2 cut(s)	170, 536
Hpy166II	GTNNAC	3 cut(s)	388, 638, 661
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	3 cut(s)	388, 638, 661
Hpy99I	CGWCG	1 cut(s)	610
HpyAV	CCTTC	3 cut(s)	192, 438, 481
HpyCH4III	ACNGT	4 cut(s)	130, 151, 312, 385
HpyCH4IV	ACGT	1 cut(s)	709
HpyCH4V	TGCA	2 cut(s)	401, 826
HpySE526I	ACGT	1 cut(s)	709
Hsp92II	CATG	5 cut(s)	57, 273, 319, 505, 703
HspAI	GCGC	1 cut(s)	448
Kpn2I	TCCGGA	1 cut(s)	39
Kzo9I	GATC	1 cut(s)	673
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	1 cut(s)	234
MabI	ACCWGGT	1 cut(s)	685
MaeI	CTAG	3 cut(s)	285, 479, 788
MaeII	ACGT	1 cut(s)	709
MaeIII	GTNAC	2 cut(s)	230, 556
MalI	GATC	1 cut(s)	675
MboI	GATC	1 cut(s)	673
MboII	GAAGA	4 cut(s)	496, 733, 787, 824
MhlI	GDGCHC	1 cut(s)	203
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	7 cut(s)	28, 45, 106, 122, 208, 723, 820
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	3 cut(s)	282, 636, 747
MmeI	TCCRAC	2 cut(s)	700, 712
MnlI	CCTC	9 cut(s)	131, 315, 401, 502, 617, 728, 773, 794, 802
Mox20I	TGGCCA	1 cut(s)	299
MroI	TCCGGA	1 cut(s)	39
MroXI	GAANNNNTTC	2 cut(s)	49, 491
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	2 cut(s)	218, 819
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	2 cut(s)	40, 228
MspR9I	CCNGG	2 cut(s)	135, 687
MvaI	CCWGG	2 cut(s)	135, 687
NdeII	GATC	1 cut(s)	673
NlaIII	CATG	5 cut(s)	57, 273, 319, 505, 703
NlaIV	GGNNCC	1 cut(s)	132
NspI	RCATGY	1 cut(s)	703
PaeI	GCATGC	1 cut(s)	703
PceI	AGGCCT	1 cut(s)	783
PdmI	GAANNNNTTC	2 cut(s)	49, 491
PfeI	GAWTC	1 cut(s)	577
PinAI	ACCGGT	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	224
PleI	GAGTC	3 cut(s)	282, 635, 746
PpsI	GAGTC	3 cut(s)	282, 635, 746
Ppu21I	YACGTR	1 cut(s)	710
PshBI	ATTAAT	1 cut(s)	819
Psp6I	CCWGG	2 cut(s)	133, 685
PspFI	CCCAGC	1 cut(s)	593
PspGI	CCWGG	2 cut(s)	133, 685
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	3 cut(s)	130, 179, 635
RsaI	GTAC	4 cut(s)	22, 89, 314, 708
RsaNI	GTAC	4 cut(s)	21, 88, 313, 707
SaqAI	TTAA	2 cut(s)	218, 819
SatI	GCNGC	1 cut(s)	223
Sau3AI	GATC	1 cut(s)	673
Sau96I	GGNCC	3 cut(s)	130, 179, 635
SchI	GAGTC	3 cut(s)	282, 636, 747
ScrFI	CCNGG	2 cut(s)	135, 687
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	8 cut(s)	184, 266, 393, 440, 652, 688, 712, 888
SexAI	ACCWGGT	1 cut(s)	685
SinI	GGWCC	3 cut(s)	130, 179, 635
SpeI	ACTAGT	1 cut(s)	478
SphI	GCATGC	1 cut(s)	703
Sse9I	AATT	7 cut(s)	28, 45, 106, 122, 208, 723, 820
SseBI	AGGCCT	1 cut(s)	783
SsiI	CCGC	2 cut(s)	250, 680
SspI	AATATT	1 cut(s)	83
SspMI	CTAG	3 cut(s)	285, 479, 788
StuI	AGGCCT	1 cut(s)	783
StyD4I	CCNGG	2 cut(s)	133, 685
StyI	CCWWGG	1 cut(s)	787
TaaI	ACNGT	4 cut(s)	130, 151, 312, 385
TaiI	ACGT	1 cut(s)	712
TasI	AATT	7 cut(s)	28, 45, 106, 122, 208, 723, 820
TatI	WGTACW	2 cut(s)	87, 312
TfiI	GAWTC	1 cut(s)	577
Tru1I	TTAA	2 cut(s)	218, 819
Tru9I	TTAA	2 cut(s)	218, 819
TseI	GCWGC	1 cut(s)	222
TspDTI	ATGAA	5 cut(s)	42, 174, 294, 332, 733
VpaK11BI	GGWCC	3 cut(s)	130, 179, 635
VspI	ATTAAT	1 cut(s)	819
XagI	CCTNNNNNAGG	1 cut(s)	621
XceI	RCATGY	1 cut(s)	703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XmaJI	CCTAGG	1 cut(s)	787
XmiI	GTMKAC	1 cut(s)	660
XmnI	GAANNNNTTC	2 cut(s)	49, 491
XspI	CTAG	3 cut(s)	285, 479, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.