RLG00000017380

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000292
Physical Location & Seq
Forward (+)
15886658 .. 15889797
3140 bp
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UTR
Exon/CDS
Intron
RLM00000017380

Sequence Viewer

Length: 501 bp
ATGCTTCACTCTTCGCGCAAATCCCTCAGAAATACCAATTGTCGACCACCTTTAAGGCCATCAGAACAAGGGCTCCATCTTGACGCCGCCAAACGAGCAAACACCGCTGCACCTCTATCGCCACTTGGAAACAGCCCCGCCCAAAGCCGTCCCGTGACAAAAGGAGACTATGGTCCTCTTATATCAGCTATCTCTATAGATTCTGACTTTCCACCCCTCAAGAAACCCAGCCAGGAGGTGGAAGCAGCGGGCCTTCTATCAAATGACACTGCAATTGCTGTTAAGAAGCTTTCTGCCAAATCAAAGCAAGGGAATCGTGAATTTGTGAATGAGATTGGCATGATTTCTGCTCTGCAACACCCTTACCTTGTCAAGCTTTATGGATGTTGTATTGAAGGAAATGACTTGTTGCTTGTCTATGAGTACTTGGAAAATAATAGCATTGCTCGTGCTCTGTTTGAGGATATATGGCACCTGAATATGCAATGCGAGGTTATCTGA

Protein Analysis

167

Amino Acids

18.21

Weight (kDa)

7.68

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 87 - 156 1.4e-11 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 87 - 152 6.7e-09 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 471
AccB7I CCANNNNNTGG 1 cut(s) 238
AccI GTMKAC 1 cut(s) 43
AccII CGCG 1 cut(s) 16
AciI CCGC 4 cut(s) 87, 105, 138, 248
AcsI RAATTY 1 cut(s) 320
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 1 cut(s) 395
AjnI CCWGG 1 cut(s) 231
AloI GAACNNNNNNTCC 2 cut(s) 57, 89
AluBI AGCT 3 cut(s) 188, 289, 376
AluI AGCT 3 cut(s) 188, 289, 376
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 1 cut(s) 159
AoxI GGCC 2 cut(s) 56, 250
ApeKI GCWGC 2 cut(s) 107, 245
ApoI RAATTY 1 cut(s) 320
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 2 cut(s) 173, 250
AvaII GGWCC 1 cut(s) 173
BanI GGYRCC 1 cut(s) 471
BanII GRGCYC 1 cut(s) 75
BauI CACGAG 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 454
BbvI GCAGC 2 cut(s) 94, 257
BccI CCATC 2 cut(s) 67, 84
BceAI ACGGC 1 cut(s) 132
BcgI CGANNNNNNTGC 4 cut(s) 99, 133, 296, 330
BciT130I CCWGG 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 195
BisI GCNGC 3 cut(s) 87, 108, 246
BlsI GCNGC 3 cut(s) 88, 109, 247
BmcAI AGTACT 1 cut(s) 425
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 173, 250
BmiI GGNNCC 2 cut(s) 74, 473
BmrFI CCNGG 1 cut(s) 233
BoxI GACNNNNGTC 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 84
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse3DI GCAATG 2 cut(s) 441, 491
BseBI CCWGG 1 cut(s) 233
BseGI GGATG 1 cut(s) 389
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 2 cut(s) 441, 491
BseMII CTCAG 1 cut(s) 40
BseXI GCAGC 2 cut(s) 94, 257
BseYI CCCAGC 1 cut(s) 227
BsgI GTGCAG 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 16
BshFI GGCC 2 cut(s) 58, 252
BshNI GGYRCC 1 cut(s) 471
BsiHKAI GWGCWC 1 cut(s) 454
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 135
BsnI GGCC 2 cut(s) 58, 252
Bsp1286I GDGCHC 2 cut(s) 75, 454
BspACI CCGC 4 cut(s) 87, 105, 138, 248
BspANI GGCC 2 cut(s) 58, 252
BspCNI CTCAG 1 cut(s) 39
BspFNI CGCG 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 74, 473
BspT107I GGYRCC 1 cut(s) 471
BsrDI GCAATG 2 cut(s) 441, 491
BssNI GRCGYC 1 cut(s) 84
BssSI CACGAG 1 cut(s) 447
Bst2BI CACGAG 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 233
Bst6I CTCTTC 1 cut(s) 16
BstACI GRCGYC 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 389
BstFNI CGCG 1 cut(s) 16
BstHHI GCGC 1 cut(s) 18
BstMAI GTCTC 1 cut(s) 159
BstMWI GCNNNNNNNGC 2 cut(s) 95, 104
BstNI CCWGG 1 cut(s) 233
BstPAI GACNNNNGTC 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 231
BstSFI CTRYAG 1 cut(s) 195
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 2 cut(s) 94, 257
BsuRI GGCC 2 cut(s) 58, 252
BtsCI GGATG 1 cut(s) 389
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 250
CfoI GCGC 1 cut(s) 18
Cfr13I GGNCC 2 cut(s) 173, 250
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 424
CviAII CATG 1 cut(s) 340
CviJI RGCY 9 cut(s) 58, 73, 135, 147, 188, 231, 252, 289, 376
CviKI_1 RGCY 9 cut(s) 58, 73, 135, 147, 188, 231, 252, 289, 376
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 1 cut(s) 26
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 75
FaeI CATG 1 cut(s) 343
FaiI YATR 9 cut(s) 171, 182, 197, 341, 381, 420, 467, 469, 482
FaqI GGGAC 1 cut(s) 135
FatI CATG 1 cut(s) 339
FauI CCCGC 2 cut(s) 145, 241
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 3 cut(s) 87, 108, 246
FokI GGATG 1 cut(s) 396
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 3 cut(s) 87, 108, 246
GlaI GCGC 1 cut(s) 17
GluI GCNGC 3 cut(s) 87, 108, 246
GsaI CCCAGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 58, 252
HgaI GACGC 1 cut(s) 92
HhaI GCGC 1 cut(s) 18
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 1 cut(s) 343
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HincII GTYRAC 1 cut(s) 44
HindII GTYRAC 1 cut(s) 44
HindIII AAGCTT 2 cut(s) 287, 374
HinfI GANTC 2 cut(s) 200, 313
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 4 cut(s) 29, 64, 205, 500
Hpy188III TCNNGA 3 cut(s) 80, 220, 317
Hpy8I GTNNAC 1 cut(s) 44
HpyAV CCTTC 2 cut(s) 263, 389
HpyCH4V TGCA 4 cut(s) 110, 272, 355, 484
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 104
HpyF3I CTNAG 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 1 cut(s) 343
HspAI GCGC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 4 cut(s) 218, 241, 245, 488
Lsp1109I GCAGC 2 cut(s) 94, 257
MaeIII GTNAC 1 cut(s) 154
MboII GAAGA 1 cut(s) 3
MfeI CAATTG 2 cut(s) 37, 273
MhlI GDGCHC 2 cut(s) 75, 454
MluCI AATT 3 cut(s) 37, 273, 320
MnlI CCTC 7 cut(s) 35, 123, 186, 227, 229, 454, 484
MseI TTAA 2 cut(s) 53, 282
MspA1I CMGCKG 2 cut(s) 107, 248
MspR9I CCNGG 1 cut(s) 233
MunI CAATTG 2 cut(s) 37, 273
MvaI CCWGG 1 cut(s) 233
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 2 cut(s) 95, 104
NlaIII CATG 1 cut(s) 343
NlaIV GGNNCC 2 cut(s) 74, 473
NmuCI GTSAC 1 cut(s) 154
PfeI GAWTC 2 cut(s) 200, 313
PflMI CCANNNNNTGG 1 cut(s) 238
PkrI GCNGC 3 cut(s) 88, 109, 247
PshAI GACNNNNGTC 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 231
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 74, 473
PspPI GGNCC 2 cut(s) 173, 250
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
SalI GTCGAC 1 cut(s) 42
SaqAI TTAA 2 cut(s) 53, 282
SatI GCNGC 3 cut(s) 87, 108, 246
Sau96I GGNCC 2 cut(s) 173, 250
ScaI AGTACT 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 2 cut(s) 75, 454
SetI ASST 9 cut(s) 52, 115, 190, 240, 291, 369, 378, 477, 495
SfcI CTRYAG 1 cut(s) 195
SinI GGWCC 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 3 cut(s) 37, 273, 320
SsiI CCGC 4 cut(s) 87, 105, 138, 248
StyD4I CCNGG 1 cut(s) 231
TaqI TCGA 1 cut(s) 43
TasI AATT 3 cut(s) 37, 273, 320
TatI WGTACW 1 cut(s) 423
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 2 cut(s) 200, 313
Tru1I TTAA 2 cut(s) 53, 282
Tru9I TTAA 2 cut(s) 53, 282
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 107, 245
Tsp45I GTSAC 1 cut(s) 154
TspRI CASTG 1 cut(s) 274
Van91I CCANNNNNTGG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 1 cut(s) 320
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 43
ZrmI AGTACT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.