Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001458

Physical Location & Seq

Genomic Coordinates Reverse (-)

11619589 .. 11622025

Gene Structure 2437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCTCGCATTCGTCTCTGCTACGACGGCTCTTGAATTTCGAGTGGTATCGGCGTTCCGACGACGACGACGTTTTGGGTTACAAGAAGGACGTTTCACGATGGACATAATCTCTCAGTTACAGGAACAAACCAATAAAATTGCTGCTATTACCTTCAATACCTTCGGAACATTACAAAGGGATTCTCCTGCAGTCAAACTTTCTCCAGATTATCCAGAACCACCTGCTAACCTTACAGAGGATGCGACCAATTTTGCTGAACAACCCAAGCTCATGAGTGAAGCTTTGGTTCAAGCTGCGAAGCAGTTTGATGCATTAGTTGCTGCACTACCATTAGTTGATGGAGGTGAAGAAGCACAGCTCAAAAGGATTGCAGAACTGCAGGCGGAAAATGATGCCATCGGCCAAGAACTTCAGCGACAACTGGAAGCAGCAGAGGAGGAACTGAAGCAGGTCCGTGAACTGTTCAGCCAAGCTACAGATAATTGCTTGAATTTGAAGAAACCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043076 GO:0043078 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0098542 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med21

Protein Analysis

171

Amino Acids

18.95

Weight (kDa)

4.8

Isoelectric Point (pI)

68.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med21	PF11221	34 - 159	2.2e-25	Subunit 21 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04780
fragaria_vesca	FvH4_3g18180 FvH4_3g18181 FvH4_4g21200
malus_domestica	MD10G1319700.v1.1
prunus_persica	Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1
pyrus_communis	pycom10g27060 pycom16g12330
rosa_chinensis	RchiOBHm_Chr4g0426811 RchiOBHm_Chr5g0030661 RchiOBHm_Chr5g0030681
rosa_laevigata	RLG00000007276 RLG00000033237 RLG00000033242 RLG00000033244
rosa_multiflora	Rmu_sc0000953.1_g000011 Rmu_sc0004341.1_g000003 Rmu_sc0004963.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049620 Rroxscaffold_1G00049630 Rroxscaffold_1G00049640 Rroxscaffold_5G00368780
rosa_rugosa	Rorug04G0215000 Rorug05G0120100 Rorug05G0120100
rosa_samantha	Rh4AG270000 Rh4BG276300 Rh4CG291000 Rh4DG273500 Rh5AG211500 Rh5AG211700 Rh5BG210400 Rh5BG210600 Rh5CG234200 Rh5DG215500 Rh5DG215600 Rh5DG215800 Rh5DG215900
rosa_wichuraiana	Rw4G023430 Rw5G019370 Rw5G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	232
Acc36I	ACCTGC	2 cut(s)	232, 442
AciI	CCGC	1 cut(s)	386
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	35, 493
AcuI	CTGAAG	2 cut(s)	398, 467
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	5 cut(s)	35, 157, 293, 493, 499
AluBI	AGCT	5 cut(s)	271, 284, 296, 361, 476
AluI	AGCT	5 cut(s)	271, 284, 296, 361, 476
Alw26I	GTCTC	1 cut(s)	19
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	4 cut(s)	143, 296, 323, 431
ApoI	RAATTY	2 cut(s)	35, 493
AspS9I	GGNCC	1 cut(s)	454
AsuHPI	GGTGA	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	454
BbvI	GCAGC	4 cut(s)	130, 283, 310, 443
BccI	CCATC	3 cut(s)	94, 335, 407
BceAI	ACGGC	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	19
BfmI	CTRYAG	3 cut(s)	189, 380, 477
BfuAI	ACCTGC	2 cut(s)	232, 442
BisI	GCNGC	4 cut(s)	144, 297, 324, 432
BlsI	GCNGC	4 cut(s)	145, 298, 325, 433
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	454
BmsI	GCATC	3 cut(s)	232, 301, 385
BpmI	CTGGAG	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	429
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	429
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	4 cut(s)	130, 283, 310, 443
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	405
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	19
BsmBI	CGTCTC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	8
BsnI	GGCC	1 cut(s)	405
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	1 cut(s)	127
BspHI	TCATGA	1 cut(s)	273
BspMAI	CTGCAG	2 cut(s)	193, 384
BspMI	ACCTGC	2 cut(s)	232, 442
BsrI	ACTGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	465
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	6, 384
BstDEI	CTNAG	1 cut(s)	114
BstENI	CCTNNNNNAGG	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	247
BstMAI	GTCTC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 320
BstSFI	CTRYAG	3 cut(s)	189, 380, 477
BstV1I	GCAGC	4 cut(s)	130, 283, 310, 443
BsuRI	GGCC	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	247
BveI	ACCTGC	2 cut(s)	232, 442
Cac8I	GCNNGC	2 cut(s)	6, 384
CciI	TCATGA	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	454
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	8 cut(s)	29, 271, 284, 296, 361, 405, 471, 476
CviKI_1	RGCY	8 cut(s)	29, 271, 284, 296, 361, 405, 471, 476
DdeI	CTNAG	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	403
EciI	GGCGGA	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	454
Eco57I	CTGAAG	2 cut(s)	398, 467
EcoNI	CCTNNNNNAGG	1 cut(s)	236
EcoT22I	ATGCAT	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	1 cut(s)	277
FaiI	YATR	2 cut(s)	107, 275
FatI	CATG	1 cut(s)	273
Fnu4HI	GCNGC	4 cut(s)	144, 297, 324, 432
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	4 cut(s)	144, 297, 324, 432
GluI	GCNGC	4 cut(s)	144, 297, 324, 432
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	405
Hin1II	CATG	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	1 cut(s)	182
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	2 cut(s)	59, 167
Hpy188III	TCNNGA	5 cut(s)	32, 97, 206, 215, 274
Hpy8I	GTNNAC	1 cut(s)	461
Hpy99I	CGWCG	5 cut(s)	28, 63, 66, 69, 72
HpyAV	CCTTC	3 cut(s)	80, 163, 172
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4IV	ACGT	2 cut(s)	70, 91
HpyCH4V	TGCA	5 cut(s)	191, 314, 326, 374, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 320
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	2 cut(s)	70, 91
Hsp92II	CATG	1 cut(s)	277
LpnPI	CCDG	8 cut(s)	107, 201, 219, 228, 237, 368, 410, 437
Lsp1109I	GCAGC	4 cut(s)	130, 283, 310, 443
LweI	GCATC	3 cut(s)	232, 301, 385
MaeII	ACGT	2 cut(s)	70, 91
MaeIII	GTNAC	2 cut(s)	78, 117
MboII	GAAGA	2 cut(s)	362, 511
MluCI	AATT	5 cut(s)	35, 138, 250, 484, 493
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	4 cut(s)	232, 338, 430, 433
Mph1103I	ATGCAT	1 cut(s)	316
Mva1269I	GAATGC	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	26, 320
NlaIII	CATG	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	316
PagI	TCATGA	1 cut(s)	273
PaqCI	CACCTGC	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	67
PctI	GAATGC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	4 cut(s)	145, 298, 325, 433
PspPI	GGNCC	1 cut(s)	454
PstI	CTGCAG	2 cut(s)	193, 384
SatI	GCNGC	4 cut(s)	144, 297, 324, 432
Sau96I	GGNCC	1 cut(s)	454
SfaNI	GCATC	3 cut(s)	232, 301, 385
SfcI	CTRYAG	3 cut(s)	189, 380, 477
SinI	GGWCC	1 cut(s)	454
Sse9I	AATT	5 cut(s)	35, 138, 250, 484, 493
SsiI	CCGC	1 cut(s)	386
TaaI	ACNGT	1 cut(s)	465
TaiI	ACGT	2 cut(s)	73, 94
TaqI	TCGA	1 cut(s)	40
TasI	AATT	5 cut(s)	35, 138, 250, 484, 493
TfiI	GAWTC	1 cut(s)	182
TseI	GCWGC	4 cut(s)	143, 296, 323, 431
TspGWI	ACGGA	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	454
XagI	CCTNNNNNAGG	1 cut(s)	236
XapI	RAATTY	2 cut(s)	35, 493
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.