Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004963.1

Orthogroup ID

OG0001458

Physical Location & Seq

Genomic Coordinates Reverse (-)

4405 .. 7722

Gene Structure 3318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004963.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atggattctccaccaggtttctctttgaagcggaaacgtgaacatcgacgtaagcatgataagtcagaacatgaagagaatgcaaccacaaagcctggacccgacatcttgaagtcaaataaacagagtacgagtacaagcaaggttgaggtaggtccagcgtttaatggtgttgtggaagaatattttgttggcggggttcgaatgaaggtgaaggtaggagatactgagatgaagggtgttgcattttatcccgtccctccgccaaatgttgttccccctggtattaagatggtgacaagaaaggaccttgctataccagccgtgcactcttctttacttcatcgctcagcacaaggtaagaggcaacgtgctgagcagctgagaattgcgactccagtttctctggagggctttgtttgggttccagacaatgaacaagttgctacctttgcgagtggtatcggcggctgcgacgacgacggcgttggagtagtcaggcggaggttggattctcctgctgtcaaactttctccaaattatccagaaccacctgccaaccctacagaggatgcagcaaattttgctgaacaacccaagctcatgagtgcagctctggttcaagctgcaaagcagtttgatgcattagttgcagcactgccattagccgacggaggtgaagaagcacagctcaaaaggattgcagaactgcaggctgaaaatgatactgttggccaagaactccagagacaactggaagcagcagaggaggaactaaagcaggtccgcgagttgttcagccaagctgcagataattgtttgaatttgaagaaaccagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043076 GO:0043078 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0098542 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med21

Protein Analysis

280

Amino Acids

30.47

Weight (kDa)

6.04

Isoelectric Point (pI)

58.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04780
fragaria_vesca	FvH4_3g18180 FvH4_3g18181 FvH4_4g21200
malus_domestica	MD10G1319700.v1.1
prunus_persica	Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1
pyrus_communis	pycom10g27060 pycom16g12330
rosa_chinensis	RchiOBHm_Chr4g0426811 RchiOBHm_Chr5g0030661 RchiOBHm_Chr5g0030681
rosa_laevigata	RLG00000007276 RLG00000033237 RLG00000033242 RLG00000033244
rosa_multiflora	Rmu_sc0000953.1_g000011 Rmu_sc0004341.1_g000003 Rmu_sc0004963.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049620 Rroxscaffold_1G00049630 Rroxscaffold_1G00049640 Rroxscaffold_5G00368780
rosa_rugosa	Rorug04G0215000 Rorug05G0120100 Rorug05G0120100
rosa_samantha	Rh4AG270000 Rh4BG276300 Rh4CG291000 Rh4DG273500 Rh5AG211500 Rh5AG211700 Rh5BG210400 Rh5BG210600 Rh5CG234200 Rh5DG215500 Rh5DG215600 Rh5DG215800 Rh5DG215900
rosa_wichuraiana	Rw4G023430 Rw5G019370 Rw5G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	562
Acc36I	ACCTGC	2 cut(s)	562, 772
AccII	CGCG	1 cut(s)	789
AciI	CCGC	6 cut(s)	31, 195, 263, 468, 502, 787
AcoI	YGGCCR	1 cut(s)	733
AcsI	RAATTY	2 cut(s)	580, 823
AfaI	GTAC	2 cut(s)	130, 136
AfiI	CCNNNNNNNGG	1 cut(s)	568
AgsI	TTSAA	5 cut(s)	28, 112, 623, 823, 829
AjnI	CCWGG	3 cut(s)	13, 94, 280
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	6 cut(s)	382, 601, 614, 626, 691, 806
AluI	AGCT	6 cut(s)	382, 601, 614, 626, 691, 806
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	742
Alw44I	GTGCAC	1 cut(s)	326
AoxI	GGCC	1 cut(s)	733
ApaLI	GTGCAC	1 cut(s)	326
ApeKI	GCWGC	8 cut(s)	379, 471, 575, 611, 626, 653, 761, 806
ApoI	RAATTY	2 cut(s)	580, 823
AspS9I	GGNCC	4 cut(s)	98, 155, 307, 784
AsuHPI	GGTGA	3 cut(s)	223, 307, 689
AsuII	TTCGAA	1 cut(s)	202
AvaII	GGWCC	4 cut(s)	98, 155, 307, 784
BaeGI	GKGCMC	1 cut(s)	330
BalI	TGGCCA	1 cut(s)	735
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	8 cut(s)	391, 458, 587, 613, 623, 665, 773, 793
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	2 cut(s)	308, 499
BciT130I	CCWGG	3 cut(s)	15, 96, 282
BcoDI	GTCTC	1 cut(s)	742
BfmI	CTRYAG	3 cut(s)	564, 710, 807
BfuAI	ACCTGC	2 cut(s)	562, 772
BisI	GCNGC	9 cut(s)	380, 469, 472, 576, 612, 627, 654, 762, 807
BlpI	GCTNAGC	2 cut(s)	349, 375
BlsI	GCNGC	9 cut(s)	381, 470, 473, 577, 613, 628, 655, 763, 808
Bme1390I	CCNGG	3 cut(s)	15, 96, 282
Bme18I	GGWCC	4 cut(s)	98, 155, 307, 784
BmgT120I	GGNCC	4 cut(s)	98, 155, 307, 784
BmiI	GGNNCC	2 cut(s)	100, 426
BmrFI	CCNGG	3 cut(s)	15, 96, 282
BmsI	GCATC	2 cut(s)	562, 631
BplI	GAGNNNNNCTC	2 cut(s)	598, 630
BpmI	CTGGAG	3 cut(s)	381, 428, 728
Bpu1102I	GCTNAGC	2 cut(s)	349, 375
Bpu14I	TTCGAA	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	1 cut(s)	568
Bse1I	ACTGG	2 cut(s)	398, 759
BseBI	CCWGG	3 cut(s)	15, 96, 282
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	577
BseLI	CCNNNNNNNGG	1 cut(s)	568
BseMII	CTCAG	4 cut(s)	219, 363, 366, 374
BseNI	ACTGG	2 cut(s)	398, 759
BseRI	GAGGAG	1 cut(s)	782
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	8 cut(s)	391, 458, 587, 613, 623, 665, 773, 793
BsgI	GTGCAG	1 cut(s)	630
Bsh1236I	CGCG	1 cut(s)	789
BshFI	GGCC	1 cut(s)	735
BsiHKAI	GWGCWC	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	568
BsmAI	GTCTC	1 cut(s)	742
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	735
Bsp119I	TTCGAA	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp1720I	GCTNAGC	2 cut(s)	349, 375
BspACI	CCGC	6 cut(s)	31, 195, 263, 468, 502, 787
BspANI	GGCC	1 cut(s)	735
BspCNI	CTCAG	4 cut(s)	220, 362, 367, 375
BspFNI	CGCG	1 cut(s)	789
BspHI	TCATGA	1 cut(s)	603
BspLI	GGNNCC	2 cut(s)	100, 426
BspMAI	CTGCAG	2 cut(s)	714, 811
BspMI	ACCTGC	2 cut(s)	562, 772
BspT104I	TTCGAA	1 cut(s)	202
BsrI	ACTGG	2 cut(s)	398, 759
BssECI	CCNNGG	1 cut(s)	280
Bst2UI	CCWGG	3 cut(s)	15, 96, 282
Bst4CI	ACNGT	1 cut(s)	730
Bst6I	CTCTTC	2 cut(s)	69, 337
BstAPI	GCANNNNNTGC	2 cut(s)	584, 650
BstBI	TTCGAA	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	4 cut(s)	228, 349, 375, 383
BstF5I	GGATG	1 cut(s)	577
BstFNI	CGCG	1 cut(s)	789
BstMAI	GTCTC	1 cut(s)	742
BstMWI	GCNNNNNNNGC	4 cut(s)	320, 452, 584, 650
BstNI	CCWGG	3 cut(s)	15, 96, 282
BstSCI	CCNGG	3 cut(s)	13, 94, 280
BstSFI	CTRYAG	3 cut(s)	564, 710, 807
BstSLI	GKGCMC	1 cut(s)	330
BstUI	CGCG	1 cut(s)	789
BstV1I	GCAGC	8 cut(s)	391, 458, 587, 613, 623, 665, 773, 793
BsuRI	GGCC	1 cut(s)	735
BtgZI	GCGATG	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	577
BtsI	GCAGTG	1 cut(s)	656
BtsIMutI	CAGTG	1 cut(s)	656
BveI	ACCTGC	2 cut(s)	562, 772
Cac8I	GCNNGC	1 cut(s)	714
CciI	TCATGA	1 cut(s)	603
Cfr13I	GGNCC	4 cut(s)	98, 155, 307, 784
CsiI	ACCWGGT	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	129, 135
CviAII	CATG	3 cut(s)	56, 71, 604
CviQI	GTAC	2 cut(s)	129, 135
DdeI	CTNAG	4 cut(s)	228, 349, 375, 383
EaeI	YGGCCR	1 cut(s)	733
Eam1104I	CTCTTC	2 cut(s)	69, 337
EarI	CTCTTC	2 cut(s)	69, 337
EciI	GGCGGA	2 cut(s)	252, 517
Eco47I	GGWCC	4 cut(s)	98, 155, 307, 784
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	3 cut(s)	13, 94, 280
EcoT22I	ATGCAT	1 cut(s)	646
FaeI	CATG	3 cut(s)	59, 74, 607
FaiI	YATR	4 cut(s)	57, 72, 317, 605
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	3 cut(s)	55, 70, 603
FauI	CCCGC	1 cut(s)	188
Fnu4HI	GCNGC	9 cut(s)	380, 469, 472, 576, 612, 627, 654, 762, 807
FokI	GGATG	1 cut(s)	584
Fsp4HI	GCNGC	9 cut(s)	380, 469, 472, 576, 612, 627, 654, 762, 807
GluI	GCNGC	9 cut(s)	380, 469, 472, 576, 612, 627, 654, 762, 807
GsuI	CTGGAG	3 cut(s)	381, 428, 728
HaeIII	GGCC	1 cut(s)	735
Hin1II	CATG	3 cut(s)	59, 74, 607
HinfI	GANTC	3 cut(s)	5, 394, 512
HphI	GGTGA	3 cut(s)	223, 307, 689
Hpy166II	GTNNAC	2 cut(s)	41, 328
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	6 cut(s)	109, 407, 428, 545, 604, 745
Hpy8I	GTNNAC	2 cut(s)	41, 328
Hpy99I	CGWCG	5 cut(s)	51, 479, 482, 485, 674
HpyAV	CCTTC	3 cut(s)	202, 208, 229
HpyCH4III	ACNGT	1 cut(s)	730
HpyCH4IV	ACGT	3 cut(s)	37, 49, 370
HpyF10VI	GCNNNNNNNGC	4 cut(s)	320, 452, 584, 650
HpyF3I	CTNAG	4 cut(s)	228, 349, 375, 383
HpySE526I	ACGT	3 cut(s)	37, 49, 370
Hsp92II	CATG	3 cut(s)	59, 74, 607
Lsp1109I	GCAGC	8 cut(s)	391, 458, 587, 613, 623, 665, 773, 793
LweI	GCATC	2 cut(s)	562, 631
MabI	ACCWGGT	1 cut(s)	13
MaeII	ACGT	3 cut(s)	37, 49, 370
MaeIII	GTNAC	1 cut(s)	295
MboII	GAAGA	5 cut(s)	86, 191, 324, 692, 841
MhlI	GDGCHC	1 cut(s)	330
MlsI	TGGCCA	1 cut(s)	735
MluCI	AATT	5 cut(s)	387, 538, 580, 814, 823
MluNI	TGGCCA	1 cut(s)	735
MlyI	GAGTC	1 cut(s)	388
MmeI	TCCRAC	2 cut(s)	469, 489
MnlI	CCTC	9 cut(s)	142, 270, 357, 403, 498, 562, 668, 760, 763
Mox20I	TGGCCA	1 cut(s)	735
Mph1103I	ATGCAT	1 cut(s)	646
MscI	TGGCCA	1 cut(s)	735
MseI	TTAA	3 cut(s)	165, 288, 841
Msp20I	TGGCCA	1 cut(s)	735
MspA1I	CMGCKG	1 cut(s)	382
MspR9I	CCNGG	3 cut(s)	15, 96, 282
Mva1269I	GAATGC	1 cut(s)	85
MvaI	CCWGG	3 cut(s)	15, 96, 282
MvnI	CGCG	1 cut(s)	789
MwoI	GCNNNNNNNGC	4 cut(s)	320, 452, 584, 650
NlaIII	CATG	3 cut(s)	59, 74, 607
NlaIV	GGNNCC	2 cut(s)	100, 426
NmuCI	GTSAC	1 cut(s)	295
NsiI	ATGCAT	1 cut(s)	646
NspV	TTCGAA	1 cut(s)	202
PagI	TCATGA	1 cut(s)	603
PaqCI	CACCTGC	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	3 cut(s)	43, 471, 483
PctI	GAATGC	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	5, 512
PkrI	GCNGC	9 cut(s)	381, 470, 473, 577, 613, 628, 655, 763, 808
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PpuMI	RGGWCCY	1 cut(s)	307
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	3 cut(s)	13, 94, 280
PspGI	CCWGG	3 cut(s)	13, 94, 280
PspN4I	GGNNCC	2 cut(s)	100, 426
PspPI	GGNCC	4 cut(s)	98, 155, 307, 784
PspPPI	RGGWCCY	1 cut(s)	307
PstI	CTGCAG	2 cut(s)	714, 811
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	2 cut(s)	130, 136
RsaNI	GTAC	2 cut(s)	129, 135
SaqAI	TTAA	3 cut(s)	165, 288, 841
SatI	GCNGC	9 cut(s)	380, 469, 472, 576, 612, 627, 654, 762, 807
Sau96I	GGNCC	4 cut(s)	98, 155, 307, 784
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	3 cut(s)	15, 96, 282
SduI	GDGCHC	1 cut(s)	330
SexAI	ACCWGGT	1 cut(s)	13
SfaNI	GCATC	2 cut(s)	562, 631
SfcI	CTRYAG	3 cut(s)	564, 710, 807
SfuI	TTCGAA	1 cut(s)	202
SinI	GGWCC	4 cut(s)	98, 155, 307, 784
Sse9I	AATT	5 cut(s)	387, 538, 580, 814, 823
SsiI	CCGC	6 cut(s)	31, 195, 263, 468, 502, 787
SspI	AATATT	1 cut(s)	185
StyD4I	CCNGG	3 cut(s)	13, 94, 280
TaaI	ACNGT	1 cut(s)	730
TaiI	ACGT	3 cut(s)	40, 52, 373
TaqI	TCGA	2 cut(s)	46, 202
TasI	AATT	5 cut(s)	387, 538, 580, 814, 823
TatI	WGTACW	1 cut(s)	134
TauI	GCSGC	1 cut(s)	471
TfiI	GAWTC	2 cut(s)	5, 512
Tru1I	TTAA	3 cut(s)	165, 288, 841
Tru9I	TTAA	3 cut(s)	165, 288, 841
TscAI	CASTG	1 cut(s)	663
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	8 cut(s)	379, 471, 575, 611, 626, 653, 761, 806
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	5 cut(s)	87, 221, 248, 332, 450
TspGWI	ACGGA	1 cut(s)	687
TspRI	CASTG	1 cut(s)	663
VneI	GTGCAC	1 cut(s)	326
VpaK11BI	GGWCC	4 cut(s)	98, 155, 307, 784
XapI	RAATTY	2 cut(s)	580, 823
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.