Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001458

Physical Location & Seq

Genomic Coordinates Forward (+)

54954470 .. 54956286

Gene Structure 1817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG291000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGACGCAATCAGCCAATTACAAGAACAGGTGAACAAAATCGCGACCATTGCTTTCACCACCATCGGAACCCTACAGAGGGACGCTCCACCCGTCCGAATCTCCCCCAATTACCCCGAATCCGAGTCAGCACCGCAACCCAACCCGAACCCGAACCCGAACCCGAATCCGACTGATGATGCCACCGATTTCGCGATGCAGCCCAAGCTCATGAGCGCGGATCTAGTCAAAGCAGCCAAGCAGTTTGATGCATTGGTTTCGGCACTTCCGCTGTCGGAGGGAGGCGAGGAAGCTCAGATGAAGAGGATTGCGGAGCTTCAGGCCGAAAACAGCCTTGTAGGCCAACAACTTGAGAAGCAACTTGAAGCTGCAGAGAGAGAACTGGAAGAGGTCAGAGAGTTGTTTGGCCAAGCAGCAGATCACTGTTTGAACTTGAAGAAACCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med21

Protein Analysis

149

Amino Acids

16.29

Weight (kDa)

4.52

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med21	PF11221	1 - 139	4.3e-32	Subunit 21 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04780
fragaria_vesca	FvH4_3g18180 FvH4_3g18181 FvH4_4g21200
malus_domestica	MD10G1319700.v1.1
prunus_persica	Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1
pyrus_communis	pycom10g27060 pycom16g12330
rosa_chinensis	RchiOBHm_Chr4g0426811 RchiOBHm_Chr5g0030661 RchiOBHm_Chr5g0030681
rosa_laevigata	RLG00000007276 RLG00000033237 RLG00000033242 RLG00000033244
rosa_multiflora	Rmu_sc0000953.1_g000011 Rmu_sc0004341.1_g000003 Rmu_sc0004963.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049620 Rroxscaffold_1G00049630 Rroxscaffold_1G00049640 Rroxscaffold_5G00368780
rosa_rugosa	Rorug04G0215000 Rorug05G0120100 Rorug05G0120100
rosa_samantha	Rh4AG270000 Rh4BG276300 Rh4CG291000 Rh4DG273500 Rh5AG211500 Rh5AG211700 Rh5BG210400 Rh5BG210600 Rh5CG234200 Rh5DG215500 Rh5DG215600 Rh5DG215800 Rh5DG215900
rosa_wichuraiana	Rw4G023430 Rw5G019370 Rw5G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	44, 194, 218
AciI	CCGC	4 cut(s)	134, 218, 269, 311
AclWI	GGATC	1 cut(s)	228
AcoI	YGGCCR	1 cut(s)	406
AcuI	CTGAAG	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	78, 79
AgsI	TTSAA	3 cut(s)	365, 430, 436
AluBI	AGCT	4 cut(s)	208, 293, 316, 368
AluI	AGCT	4 cut(s)	208, 293, 316, 368
AlwI	GGATC	1 cut(s)	228
AoxI	GGCC	3 cut(s)	321, 340, 406
ApeKI	GCWGC	4 cut(s)	199, 233, 368, 413
AspLEI	GCGC	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	43, 49
BalI	TGGCCA	1 cut(s)	408
BbvI	GCAGC	4 cut(s)	211, 245, 355, 425
BccI	CCATC	1 cut(s)	71
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	2 cut(s)	74, 369
BglI	GCCNNNNNGGC	1 cut(s)	339
BisI	GCNGC	4 cut(s)	200, 234, 369, 414
BlsI	GCNGC	4 cut(s)	201, 235, 370, 415
BmiI	GGNNCC	1 cut(s)	70
BmsI	GCATC	3 cut(s)	169, 186, 238
BplI	GAGNNNNNCTC	2 cut(s)	70, 102
BpuEI	CTTGAG	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 79
Bse1I	ACTGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	78, 79
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	387
BseXI	GCAGC	4 cut(s)	211, 245, 355, 425
Bsh1236I	CGCG	3 cut(s)	44, 194, 218
BshFI	GGCC	3 cut(s)	323, 342, 408
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	78, 79
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	3 cut(s)	323, 342, 408
Bsp143I	GATC	2 cut(s)	220, 418
Bsp68I	TCGCGA	2 cut(s)	44, 194
BspACI	CCGC	4 cut(s)	134, 218, 269, 311
BspANI	GGCC	3 cut(s)	323, 342, 408
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	3 cut(s)	44, 194, 218
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	70
BspMAI	CTGCAG	1 cut(s)	373
BspPI	GGATC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	387
BssMI	GATC	2 cut(s)	220, 418
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	2 cut(s)	296, 381
BstDEI	CTNAG	1 cut(s)	294
BstFNI	CGCG	3 cut(s)	44, 194, 218
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	2 cut(s)	223, 421
BstMBI	GATC	2 cut(s)	220, 418
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 205, 339
BstSFI	CTRYAG	2 cut(s)	74, 369
BstUI	CGCG	3 cut(s)	44, 194, 218
BstV1I	GCAGC	4 cut(s)	211, 245, 355, 425
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	3 cut(s)	323, 342, 408
BtgZI	GCGATG	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	421
BtuMI	TCGCGA	2 cut(s)	44, 194
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	1 cut(s)	218
CseI	GACGC	2 cut(s)	14, 92
CviAII	CATG	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	2 cut(s)	222, 420
DpnII	GATC	2 cut(s)	220, 418
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	2 cut(s)	296, 381
EarI	CTCTTC	2 cut(s)	296, 381
Eco57I	CTGAAG	1 cut(s)	302
EcoT22I	ATGCAT	1 cut(s)	253
FaeI	CATG	1 cut(s)	214
FaiI	YATR	1 cut(s)	212
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	1 cut(s)	210
Fnu4HI	GCNGC	4 cut(s)	200, 234, 369, 414
Fsp4HI	GCNGC	4 cut(s)	200, 234, 369, 414
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	4 cut(s)	200, 234, 369, 414
HaeIII	GGCC	3 cut(s)	323, 342, 408
HgaI	GACGC	2 cut(s)	14, 92
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HinfI	GANTC	4 cut(s)	99, 119, 125, 166
HphI	GGTGA	2 cut(s)	43, 49
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	7 cut(s)	68, 98, 124, 171, 277, 297, 395
Hpy188III	TCNNGA	3 cut(s)	43, 193, 211
Hpy8I	GTNNAC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4V	TGCA	3 cut(s)	199, 251, 371
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 205, 339
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	220, 418
LmnI	GCTCC	2 cut(s)	91, 313
LpnPI	CCDG	3 cut(s)	14, 305, 368
Lsp1109I	GCAGC	4 cut(s)	211, 245, 355, 425
LweI	GCATC	3 cut(s)	169, 186, 238
MaeI	CTAG	1 cut(s)	224
MalI	GATC	2 cut(s)	222, 420
MboI	GATC	2 cut(s)	220, 418
MboII	GAAGA	3 cut(s)	313, 398, 448
MflI	RGATCY	1 cut(s)	220
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	2 cut(s)	17, 109
MluNI	TGGCCA	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	2 cut(s)	194, 255
MnlI	CCTC	6 cut(s)	72, 271, 275, 280, 297, 382
Mox20I	TGGCCA	1 cut(s)	408
Mph1103I	ATGCAT	1 cut(s)	253
MscI	TGGCCA	1 cut(s)	408
Msp20I	TGGCCA	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	271
MvnI	CGCG	3 cut(s)	44, 194, 218
MwoI	GCNNNNNNNGC	3 cut(s)	50, 205, 339
NdeII	GATC	2 cut(s)	220, 418
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	70
NruI	TCGCGA	2 cut(s)	44, 194
NsiI	ATGCAT	1 cut(s)	253
PagI	TCATGA	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	99, 119, 166
PkrI	GCNGC	4 cut(s)	201, 235, 370, 415
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	70
PstI	CTGCAG	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	220
RruI	TCGCGA	2 cut(s)	44, 194
SatI	GCNGC	4 cut(s)	200, 234, 369, 414
Sau3AI	GATC	2 cut(s)	220, 418
SchI	GAGTC	1 cut(s)	134
SetI	ASST	6 cut(s)	33, 210, 295, 318, 370, 393
SfaNI	GCATC	3 cut(s)	169, 186, 238
SfcI	CTRYAG	2 cut(s)	74, 369
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	2 cut(s)	17, 109
SsiI	CCGC	4 cut(s)	134, 218, 269, 311
SspMI	CTAG	1 cut(s)	224
TaaI	ACNGT	1 cut(s)	425
TasI	AATT	2 cut(s)	17, 109
TfiI	GAWTC	3 cut(s)	99, 119, 166
TscAI	CASTG	1 cut(s)	428
TseI	GCWGC	4 cut(s)	199, 233, 368, 413
TspDTI	ATGAA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	428
XspI	CTAG	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.